Wall clock time and date at job start Tue Mar 31 2020 07:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47217 * 2 1 4 4 H 1.09000 * 109.46879 * 304.99638 * 3 2 1 5 5 C 1.53002 * 109.46897 * 184.99983 * 3 2 1 6 6 N 1.46497 * 109.47171 * 65.00074 * 3 2 1 7 7 N 1.40099 * 119.99721 * 210.00114 * 6 3 2 8 8 C 1.29814 * 120.00026 * 179.97438 * 7 6 3 9 9 C 1.47386 * 120.00104 * 179.97438 * 8 7 6 10 10 C 1.39815 * 120.06694 * 0.02562 * 9 8 7 11 11 C 1.37777 * 120.01568 * 179.97438 * 10 9 8 12 12 C 1.38952 * 120.14438 * 359.97438 * 11 10 9 13 13 O 1.35718 * 119.93048 * 180.02562 * 12 11 10 14 14 C 1.34787 * 117.00183 * 354.38140 * 13 12 11 15 15 H 1.08001 * 120.00347 * 5.07076 * 14 13 12 16 16 C 1.38603 * 119.99781 * 185.06275 * 14 13 12 17 17 N 1.31598 * 119.99939 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47047 * 60.00118 * 18 16 14 20 20 H 1.48502 * 109.46815 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46754 * 299.99686 * 18 16 14 22 22 C 1.39521 * 120.12848 * 0.02562 * 12 11 10 23 23 O 1.35947 * 120.00399 * 180.02562 * 22 12 11 24 24 C 1.42904 * 116.99750 * 180.02562 * 23 22 12 25 25 C 1.38205 * 119.98399 * 359.78572 * 22 12 11 26 26 H 1.09005 * 109.47471 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47094 * 300.00219 * 1 2 3 28 28 H 1.09005 * 109.47171 * 60.00067 * 1 2 3 29 29 H 1.09001 * 109.47094 * 239.99781 * 2 1 3 30 30 H 1.09000 * 109.46718 * 120.00072 * 2 1 3 31 31 H 1.09000 * 109.47024 * 60.00164 * 5 3 2 32 32 H 1.09001 * 109.46726 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47074 * 299.99536 * 5 3 2 34 34 H 0.96996 * 120.00211 * 29.99862 * 6 3 2 35 35 H 1.08003 * 119.99928 * 359.72957 * 8 7 6 36 36 H 1.08001 * 119.99076 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.92547 * 179.97438 * 11 10 9 38 38 H 0.96996 * 120.00000 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.47087 * 60.00043 * 24 23 22 40 40 H 1.09003 * 109.47198 * 180.02562 * 24 23 22 41 41 H 1.09008 * 109.47165 * 300.00025 * 24 23 22 42 42 H 1.07997 * 120.06989 * 180.25043 * 25 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4442 -0.1257 6 7 1.6525 2.0975 1.2518 7 7 1.4186 3.4786 1.2765 8 6 1.0747 4.0589 2.3855 9 6 0.8292 5.5120 2.4116 10 6 0.9657 6.2666 1.2426 11 6 0.7355 7.6247 1.2680 12 6 0.3668 8.2478 2.4540 13 8 0.1405 9.5859 2.4741 14 6 0.4029 10.2679 1.3415 15 1 0.6973 9.7378 0.4478 16 6 0.2949 11.6496 1.3239 17 7 -0.0635 12.2955 2.4130 18 14 0.6579 12.5949 -0.2459 19 1 -0.2682 12.1489 -1.3176 20 1 0.4715 14.0480 -0.0030 21 1 2.0595 12.3393 -0.6646 22 6 0.2288 7.5006 3.6242 23 8 -0.1326 8.1128 4.7830 24 6 -0.2545 7.2864 5.9425 25 6 0.4546 6.1373 3.6038 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8532 0.9569 -1.0571 32 1 3.9281 2.4719 -0.1262 33 1 3.9994 0.9052 0.7161 34 1 1.5578 1.5749 2.0635 35 1 0.9647 3.4764 3.2883 36 1 1.2518 5.7847 0.3193 37 1 0.8418 8.2063 0.3642 38 1 -0.1395 13.2624 2.4006 39 1 0.7027 6.8082 6.1501 40 1 -0.5478 7.8984 6.7956 41 1 -1.0118 6.5225 5.7663 42 1 0.3443 5.5570 4.5079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790183716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:00 Heat of formation + Delta-G solvation = -3.278205 kcal Electronic energy + Delta-G solvation = -22465.336112 eV Core-core repulsion = 19026.612087 eV Total energy + Delta-G solvation = -3438.724025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.54528 -37.70422 -37.50420 -36.36570 -34.54221 -32.32166 -30.97203 -29.77068 -29.43687 -27.91114 -26.37182 -25.33795 -23.84814 -22.60629 -21.56051 -20.85776 -20.00113 -18.04199 -17.47293 -16.93736 -15.98890 -15.49223 -15.18065 -15.11542 -14.56250 -14.31352 -14.25660 -13.83188 -13.64075 -13.55618 -13.42737 -13.29502 -12.78313 -12.32120 -12.14975 -11.94390 -11.67034 -11.55831 -11.43467 -11.30817 -11.14044 -11.02391 -10.89258 -10.87038 -10.66447 -10.43135 -10.26873 -9.77970 -9.38255 -8.87317 -8.13027 -7.71847 -6.66854 -6.44578 -3.98477 1.66648 2.26187 3.07575 3.08142 3.15017 3.18826 3.24605 3.96700 4.04531 4.53749 4.62935 4.83328 4.88178 5.05460 5.15223 5.23593 5.25381 5.33286 5.42268 5.46824 5.54056 5.58768 5.62559 5.69722 5.71840 5.76028 5.87973 5.94055 6.00845 6.01907 6.14787 6.23021 6.40173 6.47762 6.62348 6.98436 7.18773 7.25843 7.31499 7.43388 7.63447 7.95958 8.19360 8.73895 8.99330 9.69723 10.72084 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.003267 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.465859 B = 8569.345005 C = 9864.005441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.184 3.816 4 H 0.079 0.921 5 C -0.168 4.168 6 N -0.665 5.665 7 N -0.247 5.247 8 C 0.094 3.906 9 C -0.117 4.117 10 C -0.057 4.057 11 C -0.221 4.221 12 C 0.144 3.856 13 O -0.157 6.157 14 C -0.390 4.390 15 H 0.094 0.906 16 C 0.040 3.960 17 N -0.854 5.854 18 Si 0.942 3.058 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 C 0.053 3.947 23 O -0.303 6.303 24 C 0.031 3.969 25 C -0.143 4.143 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.367 0.633 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.271 0.729 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.045 0.955 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 -19.574 -0.935 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.078 3.922 4 H 0.097 0.903 5 C -0.227 4.227 6 N -0.403 5.403 7 N -0.054 5.054 8 C -0.117 4.117 9 C -0.121 4.121 10 C -0.077 4.077 11 C -0.240 4.240 12 C 0.087 3.913 13 O -0.059 6.059 14 C -0.466 4.466 15 H 0.112 0.888 16 C -0.165 4.165 17 N -0.488 5.488 18 Si 0.766 3.234 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.194 1.194 22 C 0.008 3.992 23 O -0.217 6.217 24 C -0.065 4.065 25 C -0.165 4.165 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.204 0.796 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.153 0.847 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.732 -18.912 -1.804 19.193 hybrid contribution 0.087 -0.411 0.567 0.706 sum 2.818 -19.323 -1.237 19.567 Atomic orbital electron populations 1.21734 0.95370 1.01167 1.02451 1.21851 0.96612 0.96073 1.02470 1.20534 0.93438 0.91441 0.86817 0.90260 1.22333 0.96749 1.02437 1.01164 1.47964 1.80704 1.01653 1.09965 1.74237 1.11766 0.93969 1.25447 1.23790 1.00323 0.94310 0.93227 1.17538 1.11205 0.89567 0.93778 1.20849 0.97125 0.92741 0.97013 1.20879 1.10348 0.94932 0.97872 1.18821 0.95786 0.85724 0.90919 1.84028 1.71632 1.13049 1.37192 1.21376 1.47624 0.89284 0.88327 0.88839 1.25328 0.96547 0.95660 0.98998 1.70075 1.42424 1.08969 1.27284 0.85766 0.79309 0.78376 0.79921 1.19385 1.20270 1.19388 1.17984 1.05794 0.90378 0.85051 1.86243 1.84693 1.35506 1.15257 1.22886 1.00249 0.95862 0.87482 1.20662 1.05726 0.92206 0.97885 0.92996 0.92549 0.92583 0.90619 0.91886 0.92268 0.92096 0.93021 0.79575 0.88734 0.86318 0.84714 0.91872 0.93570 0.89143 0.93599 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.80 37.16 0.36 -0.86 16 2 C -0.13 -1.00 5.50 -26.73 -0.15 -1.15 16 3 C 0.18 1.85 3.25 -67.93 -0.22 1.63 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.17 -1.58 9.52 37.16 0.35 -1.23 16 6 N -0.67 -7.99 5.56 -4.89 -0.03 -8.01 16 7 N -0.25 -3.76 10.60 32.15 0.34 -3.42 16 8 C 0.09 1.43 10.74 -14.68 -0.16 1.27 16 9 C -0.12 -2.11 5.87 -105.02 -0.62 -2.72 16 10 C -0.06 -1.09 9.57 -39.16 -0.37 -1.47 16 11 C -0.22 -4.86 9.14 -39.49 -0.36 -5.22 16 12 C 0.14 3.55 6.67 -38.84 -0.26 3.29 16 13 O -0.16 -4.57 9.53 -14.35 -0.14 -4.71 16 14 C -0.39 -10.91 9.48 30.87 0.29 -10.62 16 15 H 0.09 2.39 5.19 -52.49 -0.27 2.12 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.85 -25.15 13.67 55.48 0.76 -24.39 16 18 Si 0.94 20.44 29.55 -169.99 -5.02 15.41 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 C 0.05 1.16 6.70 -39.12 -0.26 0.90 16 23 O -0.30 -6.57 10.28 -34.19 -0.35 -6.92 16 24 C 0.03 0.46 9.81 101.05 0.99 1.45 16 25 C -0.14 -2.60 8.77 -39.03 -0.34 -2.94 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.53 7.75 -51.93 -0.40 0.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.37 3.86 8.61 -182.60 -1.57 2.29 16 35 H 0.10 1.21 8.02 -52.48 -0.42 0.79 16 36 H 0.12 2.14 7.54 -52.49 -0.40 1.74 16 37 H 0.14 2.92 5.62 -52.49 -0.29 2.62 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.59 7.65 -51.92 -0.40 0.20 16 42 H 0.12 1.77 6.28 -52.49 -0.33 1.44 16 LS Contribution 356.75 15.07 5.38 5.38 Total: -1.00 -31.86 356.75 -7.32 -39.18 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.42 Total: 4.16 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -0.84 Total: -16.67 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 1.07 Total: -35.83 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.49 Total: -11.63 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.86 -7.32 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790183716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.904 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds