Wall clock time and date at job start Tue Mar 31 2020 07:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47217 * 2 1 4 4 H 1.09000 * 109.46879 * 304.99638 * 3 2 1 5 5 C 1.53002 * 109.46897 * 184.99983 * 3 2 1 6 6 N 1.46497 * 109.47171 * 65.00074 * 3 2 1 7 7 N 1.40099 * 119.99721 * 210.00114 * 6 3 2 8 8 C 1.29814 * 120.00026 * 179.97438 * 7 6 3 9 9 C 1.47386 * 120.00104 * 179.97438 * 8 7 6 10 10 C 1.39815 * 120.06694 * 0.02562 * 9 8 7 11 11 C 1.37777 * 120.01568 * 179.97438 * 10 9 8 12 12 C 1.38952 * 120.14438 * 359.97438 * 11 10 9 13 13 O 1.35718 * 119.93048 * 180.02562 * 12 11 10 14 14 C 1.34787 * 117.00183 * 354.38140 * 13 12 11 15 15 H 1.08001 * 120.00347 * 5.07076 * 14 13 12 16 16 C 1.38603 * 119.99781 * 185.06275 * 14 13 12 17 17 N 1.31598 * 119.99939 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47047 * 60.00118 * 18 16 14 20 20 H 1.48502 * 109.46815 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46754 * 299.99686 * 18 16 14 22 22 C 1.39521 * 120.12848 * 0.02562 * 12 11 10 23 23 O 1.35947 * 120.00399 * 180.02562 * 22 12 11 24 24 C 1.42904 * 116.99750 * 180.02562 * 23 22 12 25 25 C 1.38205 * 119.98399 * 359.78572 * 22 12 11 26 26 H 1.09005 * 109.47471 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47094 * 300.00219 * 1 2 3 28 28 H 1.09005 * 109.47171 * 60.00067 * 1 2 3 29 29 H 1.09001 * 109.47094 * 239.99781 * 2 1 3 30 30 H 1.09000 * 109.46718 * 120.00072 * 2 1 3 31 31 H 1.09000 * 109.47024 * 60.00164 * 5 3 2 32 32 H 1.09001 * 109.46726 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47074 * 299.99536 * 5 3 2 34 34 H 0.96996 * 120.00211 * 29.99862 * 6 3 2 35 35 H 1.08003 * 119.99928 * 359.72957 * 8 7 6 36 36 H 1.08001 * 119.99076 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.92547 * 179.97438 * 11 10 9 38 38 H 0.96996 * 120.00000 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.47087 * 60.00043 * 24 23 22 40 40 H 1.09003 * 109.47198 * 180.02562 * 24 23 22 41 41 H 1.09008 * 109.47165 * 300.00025 * 24 23 22 42 42 H 1.07997 * 120.06989 * 180.25043 * 25 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4442 -0.1257 6 7 1.6525 2.0975 1.2518 7 7 1.4186 3.4786 1.2765 8 6 1.0747 4.0589 2.3855 9 6 0.8292 5.5120 2.4116 10 6 0.9657 6.2666 1.2426 11 6 0.7355 7.6247 1.2680 12 6 0.3668 8.2478 2.4540 13 8 0.1405 9.5859 2.4741 14 6 0.4029 10.2679 1.3415 15 1 0.6973 9.7378 0.4478 16 6 0.2949 11.6496 1.3239 17 7 -0.0635 12.2955 2.4130 18 14 0.6579 12.5949 -0.2459 19 1 -0.2682 12.1489 -1.3176 20 1 0.4715 14.0480 -0.0030 21 1 2.0595 12.3393 -0.6646 22 6 0.2288 7.5006 3.6242 23 8 -0.1326 8.1128 4.7830 24 6 -0.2545 7.2864 5.9425 25 6 0.4546 6.1373 3.6038 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8532 0.9569 -1.0571 32 1 3.9281 2.4719 -0.1262 33 1 3.9994 0.9052 0.7161 34 1 1.5578 1.5749 2.0635 35 1 0.9647 3.4764 3.2883 36 1 1.2518 5.7847 0.3193 37 1 0.8418 8.2063 0.3642 38 1 -0.1395 13.2624 2.4006 39 1 0.7027 6.8082 6.1501 40 1 -0.5478 7.8984 6.7956 41 1 -1.0118 6.5225 5.7663 42 1 0.3443 5.5570 4.5079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790183716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:59 Heat of formation + Delta-G solvation = -23.662273 kcal Electronic energy + Delta-G solvation = -22466.220031 eV Core-core repulsion = 19026.612087 eV Total energy + Delta-G solvation = -3439.607945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.19662 -39.21884 -38.75618 -37.76657 -35.73390 -34.25442 -32.04271 -31.14981 -30.75608 -29.13002 -27.70581 -27.23842 -24.70646 -23.93982 -23.17980 -21.69861 -21.39192 -19.85673 -19.14980 -18.26476 -17.35309 -16.68147 -16.63870 -16.59752 -16.27726 -15.49540 -15.41524 -15.19449 -15.07070 -14.95322 -14.65487 -14.29792 -13.91601 -13.82008 -13.45081 -13.22531 -12.95254 -12.80606 -12.67570 -12.59280 -12.49953 -12.18752 -12.12499 -11.99551 -11.88186 -11.64012 -11.59236 -11.36559 -10.85793 -10.77225 -9.64460 -9.09791 -8.43090 -8.20015 -6.07201 0.17841 0.62008 1.37123 1.45933 1.53651 1.77980 2.04679 2.20501 2.63059 2.91222 3.21329 3.44843 3.81082 3.97007 4.04150 4.16198 4.22724 4.35839 4.38055 4.46204 4.50116 4.52703 4.59090 4.70654 4.76998 4.77602 4.80963 4.89393 4.96889 5.03707 5.09264 5.11264 5.16686 5.31714 5.33382 5.42848 5.51446 5.65173 5.81136 5.98367 6.04409 6.40917 6.68034 7.00727 7.63573 7.82756 8.79780 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.003267 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.465859 B = 8569.345005 C = 9864.005441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.177 3.823 4 H 0.065 0.935 5 C -0.163 4.163 6 N -0.653 5.653 7 N -0.253 5.253 8 C 0.077 3.923 9 C -0.084 4.084 10 C -0.071 4.071 11 C -0.215 4.215 12 C 0.093 3.907 13 O -0.217 6.217 14 C -0.414 4.414 15 H 0.103 0.897 16 C -0.023 4.023 17 N -0.918 5.918 18 Si 1.019 2.981 19 H -0.256 1.256 20 H -0.272 1.272 21 H -0.257 1.257 22 C 0.045 3.955 23 O -0.344 6.344 24 C 0.019 3.981 25 C -0.132 4.132 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.059 0.941 34 H 0.380 0.620 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.272 0.728 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -23.990 -1.337 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.072 3.928 4 H 0.083 0.917 5 C -0.222 4.222 6 N -0.392 5.392 7 N -0.061 5.061 8 C -0.134 4.134 9 C -0.087 4.087 10 C -0.092 4.092 11 C -0.235 4.235 12 C 0.041 3.959 13 O -0.123 6.123 14 C -0.490 4.490 15 H 0.121 0.879 16 C -0.220 4.220 17 N -0.556 5.556 18 Si 0.838 3.162 19 H -0.180 1.180 20 H -0.196 1.196 21 H -0.181 1.181 22 C 0.000 4.000 23 O -0.259 6.259 24 C -0.075 4.075 25 C -0.153 4.153 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.218 0.782 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.643 -23.425 -2.203 23.809 hybrid contribution -0.120 0.326 0.744 0.821 sum 3.523 -23.100 -1.459 23.412 Atomic orbital electron populations 1.21733 0.95853 1.01810 1.01336 1.21806 0.96019 0.94245 1.04007 1.20762 0.93974 0.92658 0.85437 0.91720 1.22274 0.95971 1.01278 1.02654 1.48098 1.79468 1.00299 1.11342 1.74103 1.09601 0.96180 1.26220 1.23633 1.02216 0.92759 0.94777 1.17963 1.06581 0.91343 0.92854 1.21011 0.97968 0.91661 0.98547 1.20974 1.09430 0.96109 0.96975 1.19468 0.98207 0.85089 0.93171 1.84002 1.75343 1.15019 1.37913 1.21854 1.48191 0.90118 0.88869 0.87942 1.26608 0.96193 0.96354 1.02887 1.70231 1.45996 1.09166 1.30176 0.84652 0.79687 0.76655 0.75232 1.18050 1.19643 1.18141 1.18301 1.05394 0.91531 0.84748 1.86197 1.84745 1.38301 1.16668 1.23292 1.02218 0.96395 0.85602 1.21049 1.03905 0.90751 0.99618 0.91548 0.93849 0.93486 0.88778 0.90612 0.90281 0.94467 0.92210 0.78171 0.85180 0.84886 0.85445 0.91881 0.91395 0.87480 0.91320 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.80 71.98 0.71 -1.28 16 2 C -0.12 -1.38 5.50 30.59 0.17 -1.21 16 3 C 0.18 2.99 3.25 44.99 0.15 3.13 16 4 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.16 -2.56 9.52 71.98 0.69 -1.87 16 6 N -0.65 -13.28 5.56 -169.39 -0.94 -14.22 16 7 N -0.25 -6.86 10.60 -52.21 -0.55 -7.41 16 8 C 0.08 2.03 10.74 87.40 0.94 2.97 16 9 C -0.08 -2.82 5.87 -20.13 -0.12 -2.94 16 10 C -0.07 -2.71 9.57 22.54 0.22 -2.49 16 11 C -0.22 -9.83 9.14 22.33 0.20 -9.62 16 12 C 0.09 4.83 6.67 22.75 0.15 4.98 16 13 O -0.22 -13.60 9.53 -7.98 -0.08 -13.68 16 14 C -0.41 -24.81 9.48 67.91 0.64 -24.17 16 15 H 0.10 5.59 5.19 -2.91 -0.02 5.58 16 16 C -0.02 -1.32 5.49 84.81 0.47 -0.86 16 17 N -0.92 -57.90 13.67 21.61 0.30 -57.60 16 18 Si 1.02 43.81 29.55 68.60 2.03 45.83 16 19 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 C 0.05 2.02 6.70 22.57 0.15 2.17 16 23 O -0.34 -15.22 10.28 -78.98 -0.81 -16.03 16 24 C 0.02 0.53 9.81 113.37 1.11 1.64 16 25 C -0.13 -4.48 8.77 22.62 0.20 -4.29 16 26 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.04 0.68 7.75 -2.39 -0.02 0.66 16 28 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.38 6.29 8.61 -213.33 -1.84 4.46 16 35 H 0.13 2.58 8.02 -2.91 -0.02 2.56 16 36 H 0.13 4.63 7.54 -2.91 -0.02 4.61 16 37 H 0.13 5.84 5.62 -2.91 -0.02 5.82 16 38 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.07 1.57 7.67 -2.39 -0.02 1.55 16 40 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.07 1.57 7.65 -2.38 -0.02 1.55 16 42 H 0.16 4.06 6.28 -2.91 -0.02 4.04 16 Total: -1.00 -76.64 356.75 4.80 -71.85 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.81 Total: 25.10 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 5.67 Total: -33.84 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -1.20 Total: -79.24 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.89 Total: -29.71 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -76.64 4.80 -71.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790183716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.184 kcal (2) G-P(sol) polarization free energy of solvation -76.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds