Wall clock time and date at job start Tue Mar 31 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09003 * 109.47027 * 278.89625 * 3 2 1 5 5 N 1.46495 * 109.47092 * 158.89550 * 3 2 1 6 6 C 1.34786 * 120.00134 * 84.99463 * 5 3 2 7 7 O 1.21589 * 119.99222 * 5.03064 * 6 5 3 8 8 N 1.34772 * 120.00111 * 185.02777 * 6 5 3 9 9 C 1.46504 * 119.99989 * 185.03198 * 8 6 5 10 10 C 1.52998 * 109.47045 * 175.18530 * 9 8 6 11 11 C 1.50697 * 115.55014 * 65.21638 * 10 9 8 12 12 H 1.08001 * 119.99504 * 264.81682 * 11 10 9 13 13 C 1.37870 * 120.00600 * 84.81917 * 11 10 9 14 14 N 1.31510 * 120.00495 * 184.67413 * 13 11 10 15 15 Si 1.86807 * 119.99719 * 4.67150 * 13 11 10 16 16 H 1.48493 * 109.47077 * 94.52704 * 15 13 11 17 17 H 1.48498 * 109.47084 * 214.52826 * 15 13 11 18 18 H 1.48502 * 109.46779 * 334.52533 * 15 13 11 19 19 C 1.53001 * 117.49828 * 279.53936 * 10 9 8 20 20 C 1.53004 * 117.49423 * 210.88329 * 10 9 8 21 21 C 1.52998 * 109.47447 * 38.89511 * 3 2 1 22 22 H 1.08996 * 110.27547 * 175.63736 * 21 3 2 23 23 C 1.54953 * 110.31060 * 297.83630 * 21 3 2 24 24 C 1.55297 * 100.94327 * 155.35663 * 23 21 3 25 25 C 1.54381 * 102.25639 * 325.86758 * 24 23 21 26 26 O 1.43243 * 107.59046 * 21.35255 * 25 24 23 27 27 H 4.18743 * 15.03970 * 359.97438 * 4 2 1 28 28 H 0.97003 * 120.00473 * 265.00441 * 5 3 2 29 29 H 0.97001 * 119.99708 * 5.29882 * 8 6 5 30 30 H 1.09007 * 109.46468 * 295.18498 * 9 8 6 31 31 H 1.08997 * 109.47261 * 55.18100 * 9 8 6 32 32 H 0.97000 * 120.00509 * 180.02562 * 14 13 11 33 33 H 1.09005 * 117.49759 * 0.02562 * 19 10 9 34 34 H 1.08998 * 117.49815 * 145.02397 * 19 10 9 35 35 H 1.09003 * 117.49604 * 214.97898 * 20 10 9 36 36 H 1.08998 * 117.50010 * 359.97203 * 20 10 9 37 37 H 1.09004 * 111.12114 * 273.27648 * 23 21 3 38 38 H 1.08998 * 111.12207 * 37.43900 * 23 21 3 39 39 H 1.08993 * 110.85141 * 207.67207 * 24 23 21 40 40 H 1.09003 * 111.02240 * 84.13130 * 24 23 21 41 41 H 1.09008 * 109.82833 * 261.84544 * 25 24 23 42 42 H 1.08998 * 109.83383 * 140.86962 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1581 1.0153 5 7 3.1337 1.2894 -0.4973 6 6 3.2619 2.3326 0.3465 7 8 3.0607 2.1805 1.5359 8 7 3.6130 3.5441 -0.1282 9 6 3.8599 4.6509 0.7994 10 6 4.3552 5.8699 0.0186 11 6 3.3638 6.4725 -0.9432 12 1 3.3797 6.1869 -1.9846 13 6 2.4364 7.3884 -0.4937 14 7 1.5133 7.8450 -1.3115 15 14 2.4913 7.9808 1.2771 16 1 3.2663 9.2451 1.3523 17 1 1.1082 8.2183 1.7626 18 1 3.1429 6.9495 2.1240 19 6 5.8328 5.9028 -0.3770 20 6 5.3163 6.8229 0.7320 21 6 3.1566 -1.1218 -0.9057 22 1 4.2436 -1.0851 -0.9764 23 6 2.6967 -2.4996 -0.3660 24 6 2.7246 -3.3494 -1.6655 25 6 2.3063 -2.3213 -2.7385 26 8 2.5680 -1.0152 -2.2118 27 1 -1.0501 0.0005 0.0002 28 1 3.3643 1.3921 -1.4339 29 1 3.6985 3.6842 -1.0842 30 1 2.9350 4.9030 1.3184 31 1 4.6153 4.3538 1.5267 32 1 0.8611 8.4896 -0.9953 33 1 6.4520 5.0558 -0.0812 34 1 6.0879 6.3606 -1.3327 35 1 5.2318 7.8857 0.5053 36 1 5.5953 6.5817 1.7577 37 1 3.3995 -2.8868 0.3718 38 1 1.6889 -2.4438 0.0454 39 1 2.0055 -4.1666 -1.6101 40 1 3.7269 -3.7298 -1.8626 41 1 1.2434 -2.4259 -2.9565 42 1 2.8884 -2.4771 -3.6468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797520678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:03 Heat of formation + Delta-G solvation = 7.874845 kcal Electronic energy + Delta-G solvation = -23283.381775 eV Core-core repulsion = 19845.141382 eV Total energy + Delta-G solvation = -3438.240393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17724 -39.19862 -37.16003 -35.29081 -33.40806 -32.52314 -32.11923 -32.02220 -30.10784 -26.90002 -25.73315 -24.65484 -22.05263 -21.99479 -21.72169 -20.35167 -19.26820 -18.47268 -17.78912 -16.94517 -16.65851 -16.01138 -15.78905 -15.25289 -14.96482 -14.61560 -14.34207 -14.03667 -13.73571 -13.44255 -13.15528 -13.05299 -12.73097 -12.36282 -12.07964 -12.01347 -11.73857 -11.59560 -11.20212 -11.11547 -10.81935 -10.50504 -10.48672 -10.18091 -10.16054 -9.77408 -9.70458 -9.50169 -9.16957 -9.08514 -8.66499 -8.49806 -8.15104 -6.13003 -4.17363 2.57586 2.96591 3.30945 3.41963 3.43532 3.48739 3.53300 3.67672 4.14227 4.42179 4.43447 4.44000 4.57147 4.71850 4.89077 4.94399 5.05001 5.16757 5.19812 5.35680 5.41580 5.47835 5.54158 5.62121 5.71599 5.80746 6.04317 6.06683 6.10934 6.30693 6.44731 6.53200 6.61605 6.72640 6.78768 7.02641 7.10330 7.21973 7.45113 7.71162 7.76189 8.43975 8.56726 8.87311 9.09485 9.50464 10.98242 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.003574 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.599356 B = 7831.628509 C = 8055.687986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C 0.279 3.721 4 H 0.118 0.882 5 N -0.741 5.741 6 C 0.702 3.298 7 O -0.603 6.603 8 N -0.717 5.717 9 C 0.177 3.823 10 C -0.015 4.015 11 C -0.491 4.491 12 H 0.078 0.922 13 C 0.080 3.920 14 N -0.895 5.895 15 Si 0.877 3.123 16 H -0.280 1.280 17 H -0.294 1.294 18 H -0.254 1.254 19 C -0.178 4.178 20 C -0.191 4.191 21 C 0.078 3.922 22 H 0.089 0.911 23 C -0.149 4.149 24 C -0.154 4.154 25 C 0.052 3.948 26 O -0.371 6.371 27 H 0.214 0.786 28 H 0.403 0.597 29 H 0.402 0.598 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.265 0.735 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -21.177 -0.486 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.186 4.186 3 C 0.173 3.827 4 H 0.136 0.864 5 N -0.397 5.397 6 C 0.402 3.598 7 O -0.482 6.482 8 N -0.370 5.370 9 C 0.053 3.947 10 C -0.016 4.016 11 C -0.528 4.528 12 H 0.096 0.904 13 C -0.123 4.123 14 N -0.531 5.531 15 Si 0.705 3.295 16 H -0.206 1.206 17 H -0.220 1.220 18 H -0.178 1.178 19 C -0.216 4.216 20 C -0.229 4.229 21 C 0.020 3.980 22 H 0.106 0.894 23 C -0.187 4.187 24 C -0.192 4.192 25 C -0.025 4.025 26 O -0.290 6.290 27 H 0.231 0.769 28 H 0.237 0.763 29 H 0.236 0.764 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.354 -20.942 0.488 21.215 hybrid contribution -0.252 0.470 0.062 0.537 sum 3.102 -20.473 0.551 20.714 Atomic orbital electron populations 1.24836 0.95825 0.99125 1.01241 1.23237 0.94529 1.00980 0.99849 1.17735 0.83803 0.82482 0.98701 0.86409 1.45040 1.72016 1.09982 1.12638 1.16015 0.78020 0.80711 0.85050 1.90867 1.58561 1.84218 1.14559 1.45009 1.72789 1.08046 1.11160 1.20970 0.99425 0.84379 0.89951 1.19626 0.89548 0.94105 0.98311 1.20183 1.13495 1.24132 0.95012 0.90445 1.24963 0.94324 0.95569 0.97416 1.69894 1.16318 1.30982 1.35915 0.86866 0.76959 0.79759 0.85941 1.20593 1.22041 1.17763 1.22840 0.98612 1.01192 0.98919 1.22956 1.06942 0.97393 0.95619 1.23278 0.97677 0.93780 0.83226 0.89369 1.23289 1.03555 0.93762 0.98132 1.23102 1.02766 0.98749 0.94550 1.23109 1.00784 0.82128 0.96459 1.88477 1.82454 1.27170 1.30919 0.76865 0.76253 0.76350 0.92284 0.93826 0.92527 0.90903 0.89494 0.89295 0.90724 0.89347 0.89582 0.89942 0.90387 0.91353 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 19.25 29.55 0.57 -2.08 16 2 C -0.18 -2.74 11.08 -37.12 -0.41 -3.15 16 3 C 0.28 3.75 2.45 -70.72 -0.17 3.58 16 4 H 0.12 1.62 7.51 -51.93 -0.39 1.23 16 5 N -0.74 -11.27 5.04 -61.44 -0.31 -11.58 16 6 C 0.70 13.55 8.50 -86.91 -0.74 12.81 16 7 O -0.60 -13.63 15.98 5.29 0.08 -13.54 16 8 N -0.72 -14.08 5.49 -65.22 -0.36 -14.44 16 9 C 0.18 3.86 5.12 -4.04 -0.02 3.84 16 10 C -0.01 -0.33 0.82 -155.66 -0.13 -0.45 16 11 C -0.49 -13.09 9.18 -34.44 -0.32 -13.41 16 12 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 13 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 14 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 15 Si 0.88 21.70 24.95 -169.99 -4.24 17.46 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 18 H -0.25 -6.00 5.69 56.52 0.32 -5.68 16 19 C -0.18 -3.45 9.96 -26.69 -0.27 -3.71 16 20 C -0.19 -3.96 7.31 -26.69 -0.20 -4.15 16 21 C 0.08 0.79 3.28 -25.70 -0.08 0.71 16 22 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 23 C -0.15 -1.16 6.47 -24.48 -0.16 -1.32 16 24 C -0.15 -0.98 7.02 -24.79 -0.17 -1.16 16 25 C 0.05 0.43 7.79 37.88 0.30 0.73 16 26 O -0.37 -4.26 10.34 -35.23 -0.36 -4.62 16 27 H 0.21 2.20 7.80 -54.09 -0.42 1.78 16 28 H 0.40 5.42 8.50 -40.82 -0.35 5.07 16 29 H 0.40 7.41 8.36 -40.82 -0.34 7.07 16 30 H 0.06 1.44 7.06 -51.93 -0.37 1.07 16 31 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.09 1.91 7.13 -51.93 -0.37 1.54 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.75 7.01 -51.93 -0.36 0.38 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 350.46 15.07 5.28 5.28 Total: -1.00 -33.30 350.46 -7.49 -40.80 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -6.46 Total: 12.33 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.90 Total: -5.60 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.11 Total: -52.10 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.28 Total: -18.17 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.24 Total: 17.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.30 -7.49 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797520678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.671 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds