Wall clock time and date at job start Tue Mar 31 2020 06:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09003 * 109.47027 * 278.89625 * 3 2 1 5 5 N 1.46495 * 109.47092 * 158.89550 * 3 2 1 6 6 C 1.34786 * 120.00134 * 84.99463 * 5 3 2 7 7 O 1.21589 * 119.99222 * 5.03064 * 6 5 3 8 8 N 1.34772 * 120.00111 * 185.02777 * 6 5 3 9 9 C 1.46504 * 119.99989 * 185.03198 * 8 6 5 10 10 C 1.52998 * 109.47045 * 175.18530 * 9 8 6 11 11 C 1.50697 * 115.55014 * 65.21638 * 10 9 8 12 12 H 1.08001 * 119.99504 * 264.81682 * 11 10 9 13 13 C 1.37870 * 120.00600 * 84.81917 * 11 10 9 14 14 N 1.31510 * 120.00495 * 184.67413 * 13 11 10 15 15 Si 1.86807 * 119.99719 * 4.67150 * 13 11 10 16 16 H 1.48493 * 109.47077 * 94.52704 * 15 13 11 17 17 H 1.48498 * 109.47084 * 214.52826 * 15 13 11 18 18 H 1.48502 * 109.46779 * 334.52533 * 15 13 11 19 19 C 1.53001 * 117.49828 * 279.53936 * 10 9 8 20 20 C 1.53004 * 117.49423 * 210.88329 * 10 9 8 21 21 C 1.52998 * 109.47447 * 38.89511 * 3 2 1 22 22 H 1.08996 * 110.27547 * 175.63736 * 21 3 2 23 23 C 1.54953 * 110.31060 * 297.83630 * 21 3 2 24 24 C 1.55297 * 100.94327 * 155.35663 * 23 21 3 25 25 C 1.54381 * 102.25639 * 325.86758 * 24 23 21 26 26 O 1.43243 * 107.59046 * 21.35255 * 25 24 23 27 27 H 4.18743 * 15.03970 * 359.97438 * 4 2 1 28 28 H 0.97003 * 120.00473 * 265.00441 * 5 3 2 29 29 H 0.97001 * 119.99708 * 5.29882 * 8 6 5 30 30 H 1.09007 * 109.46468 * 295.18498 * 9 8 6 31 31 H 1.08997 * 109.47261 * 55.18100 * 9 8 6 32 32 H 0.97000 * 120.00509 * 180.02562 * 14 13 11 33 33 H 1.09005 * 117.49759 * 0.02562 * 19 10 9 34 34 H 1.08998 * 117.49815 * 145.02397 * 19 10 9 35 35 H 1.09003 * 117.49604 * 214.97898 * 20 10 9 36 36 H 1.08998 * 117.50010 * 359.97203 * 20 10 9 37 37 H 1.09004 * 111.12114 * 273.27648 * 23 21 3 38 38 H 1.08998 * 111.12207 * 37.43900 * 23 21 3 39 39 H 1.08993 * 110.85141 * 207.67207 * 24 23 21 40 40 H 1.09003 * 111.02240 * 84.13130 * 24 23 21 41 41 H 1.09008 * 109.82833 * 261.84544 * 25 24 23 42 42 H 1.08998 * 109.83383 * 140.86962 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1581 1.0153 5 7 3.1337 1.2894 -0.4973 6 6 3.2619 2.3326 0.3465 7 8 3.0607 2.1805 1.5359 8 7 3.6130 3.5441 -0.1282 9 6 3.8599 4.6509 0.7994 10 6 4.3552 5.8699 0.0186 11 6 3.3638 6.4725 -0.9432 12 1 3.3797 6.1869 -1.9846 13 6 2.4364 7.3884 -0.4937 14 7 1.5133 7.8450 -1.3115 15 14 2.4913 7.9808 1.2771 16 1 3.2663 9.2451 1.3523 17 1 1.1082 8.2183 1.7626 18 1 3.1429 6.9495 2.1240 19 6 5.8328 5.9028 -0.3770 20 6 5.3163 6.8229 0.7320 21 6 3.1566 -1.1218 -0.9057 22 1 4.2436 -1.0851 -0.9764 23 6 2.6967 -2.4996 -0.3660 24 6 2.7246 -3.3494 -1.6655 25 6 2.3063 -2.3213 -2.7385 26 8 2.5680 -1.0152 -2.2118 27 1 -1.0501 0.0005 0.0002 28 1 3.3643 1.3921 -1.4339 29 1 3.6985 3.6842 -1.0842 30 1 2.9350 4.9030 1.3184 31 1 4.6153 4.3538 1.5267 32 1 0.8611 8.4896 -0.9953 33 1 6.4520 5.0558 -0.0812 34 1 6.0879 6.3606 -1.3327 35 1 5.2318 7.8857 0.5053 36 1 5.5953 6.5817 1.7577 37 1 3.3995 -2.8868 0.3718 38 1 1.6889 -2.4438 0.0454 39 1 2.0055 -4.1666 -1.6101 40 1 3.7269 -3.7298 -1.8626 41 1 1.2434 -2.4259 -2.9565 42 1 2.8884 -2.4771 -3.6468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797520678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:01 Heat of formation + Delta-G solvation = -16.312752 kcal Electronic energy + Delta-G solvation = -23284.430628 eV Core-core repulsion = 19845.141382 eV Total energy + Delta-G solvation = -3439.289246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31434 -40.33959 -38.82487 -36.49127 -35.03446 -34.22441 -33.48271 -32.93572 -31.01749 -28.45820 -27.34779 -26.08786 -23.35584 -22.82195 -22.68840 -21.74716 -21.08285 -19.61568 -19.21435 -18.34549 -17.67670 -17.40807 -16.87535 -16.72231 -16.45448 -15.75697 -15.70825 -15.56499 -14.90546 -14.72070 -14.67969 -14.24251 -14.16272 -13.89656 -13.68656 -13.07444 -12.73300 -12.68081 -12.52182 -12.19027 -12.17912 -11.97095 -11.81552 -11.66449 -11.50443 -11.23288 -11.19944 -11.02683 -10.64628 -10.49872 -10.46034 -10.31625 -9.74410 -8.29770 -6.35930 1.32661 1.36322 1.40474 1.51779 1.87968 2.13661 2.20426 2.37604 2.79079 3.04882 3.15568 3.35932 3.49863 3.59183 3.82083 4.01132 4.04154 4.20841 4.29269 4.37755 4.41736 4.45070 4.48117 4.55975 4.82385 4.82786 4.87889 4.89024 4.94797 5.03094 5.08500 5.11433 5.26945 5.31172 5.39913 5.50673 5.61986 5.70736 6.03705 6.06283 6.28891 6.66894 6.72534 7.11690 7.34755 7.58170 8.84844 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.003574 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.599356 B = 7831.628509 C = 8055.687986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.217 4.217 3 C 0.272 3.728 4 H 0.113 0.887 5 N -0.727 5.727 6 C 0.701 3.299 7 O -0.637 6.637 8 N -0.718 5.718 9 C 0.186 3.814 10 C -0.040 4.040 11 C -0.479 4.479 12 H 0.043 0.957 13 C 0.025 3.975 14 N -0.945 5.945 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.304 1.304 18 H -0.235 1.235 19 C -0.150 4.150 20 C -0.189 4.189 21 C 0.083 3.917 22 H 0.104 0.896 23 C -0.147 4.147 24 C -0.144 4.144 25 C 0.042 3.958 26 O -0.398 6.398 27 H 0.241 0.759 28 H 0.412 0.588 29 H 0.406 0.594 30 H 0.028 0.972 31 H 0.059 0.941 32 H 0.264 0.736 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.415 -22.985 0.273 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.219 4.219 3 C 0.167 3.833 4 H 0.130 0.870 5 N -0.382 5.382 6 C 0.401 3.599 7 O -0.519 6.519 8 N -0.371 5.371 9 C 0.062 3.938 10 C -0.042 4.042 11 C -0.517 4.517 12 H 0.062 0.938 13 C -0.173 4.173 14 N -0.584 5.584 15 Si 0.754 3.246 16 H -0.193 1.193 17 H -0.232 1.232 18 H -0.158 1.158 19 C -0.187 4.187 20 C -0.227 4.227 21 C 0.025 3.975 22 H 0.122 0.878 23 C -0.185 4.185 24 C -0.181 4.181 25 C -0.034 4.034 26 O -0.318 6.318 27 H 0.258 0.742 28 H 0.248 0.752 29 H 0.242 0.758 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.095 -22.789 1.214 23.383 hybrid contribution -0.817 0.959 -0.281 1.291 sum 4.278 -21.830 0.934 22.264 Atomic orbital electron populations 1.25653 0.96860 0.98146 1.00443 1.23756 0.95499 1.01939 1.00696 1.18021 0.83413 0.82416 0.99425 0.86972 1.44974 1.70887 1.09758 1.12575 1.16144 0.77669 0.81136 0.84954 1.90836 1.60082 1.84802 1.16182 1.44938 1.73049 1.07965 1.11114 1.20717 0.98260 0.84643 0.90228 1.19434 0.90340 0.95159 0.99228 1.20363 1.13845 1.23035 0.94415 0.93844 1.25730 0.94266 0.96258 1.01058 1.70028 1.17820 1.32620 1.37962 0.86034 0.76581 0.80113 0.81871 1.19326 1.23211 1.15798 1.22873 0.95945 1.01370 0.98547 1.23033 1.05530 0.96752 0.97352 1.23313 0.98193 0.93507 0.82510 0.87821 1.23301 1.03323 0.92613 0.99242 1.23092 1.04123 0.98246 0.92659 1.23301 1.00949 0.81599 0.97517 1.88442 1.82725 1.29180 1.31414 0.74249 0.75220 0.75828 0.95397 0.92301 0.92741 0.87882 0.89579 0.90227 0.88275 0.87354 0.90788 0.88532 0.88721 0.91721 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.22 19.25 74.32 1.43 -3.79 16 2 C -0.22 -6.41 11.08 31.13 0.34 -6.06 16 3 C 0.27 7.18 2.45 43.19 0.11 7.28 16 4 H 0.11 3.06 7.51 -2.39 -0.02 3.04 16 5 N -0.73 -21.71 5.04 -466.56 -2.35 -24.06 16 6 C 0.70 26.75 8.50 179.05 1.52 28.27 16 7 O -0.64 -28.68 15.98 -4.00 -0.06 -28.74 16 8 N -0.72 -27.76 5.49 -478.52 -2.62 -30.38 16 9 C 0.19 7.91 5.12 86.38 0.44 8.35 16 10 C -0.04 -1.75 0.82 -52.93 -0.04 -1.79 16 11 C -0.48 -25.81 9.18 25.60 0.24 -25.58 16 12 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 13 C 0.02 1.42 5.47 84.65 0.46 1.88 16 14 N -0.94 -58.47 13.96 21.44 0.30 -58.17 16 15 Si 0.93 44.76 24.95 68.60 1.71 46.47 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 18 H -0.24 -10.52 5.69 99.48 0.57 -9.96 16 19 C -0.15 -5.35 9.96 30.62 0.30 -5.05 16 20 C -0.19 -7.26 7.31 30.62 0.22 -7.03 16 21 C 0.08 1.55 3.28 31.26 0.10 1.65 16 22 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 23 C -0.15 -1.98 6.47 32.05 0.21 -1.77 16 24 C -0.14 -1.45 7.02 31.85 0.22 -1.23 16 25 C 0.04 0.64 7.79 72.45 0.56 1.20 16 26 O -0.40 -8.69 10.34 -148.98 -1.54 -10.23 16 27 H 0.24 4.65 7.80 -4.41 -0.03 4.61 16 28 H 0.41 10.81 8.50 -92.71 -0.79 10.02 16 29 H 0.41 14.85 8.36 -92.71 -0.77 14.08 16 30 H 0.03 1.35 7.06 -2.38 -0.02 1.33 16 31 H 0.06 2.32 8.09 -2.39 -0.02 2.30 16 32 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 34 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.08 3.22 7.13 -2.39 -0.02 3.21 16 36 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.19 7.01 -2.39 -0.02 1.17 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -73.18 350.46 0.88 -72.29 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.67 Total: 36.48 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 6.13 Total: -3.66 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -4.68 Total: -112.61 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.60 Total: -38.97 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.71 Total: 46.47 kcal Total: -73.18 0.88 -72.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797520678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.982 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds