Wall clock time and date at job start Tue Mar 31 2020 06:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 H 1.09007 * 109.47427 * 54.99507 * 3 2 1 5 5 C 1.50701 * 109.47419 * 174.99846 * 3 2 1 6 6 H 1.08002 * 119.99761 * 119.99343 * 5 3 2 7 7 C 1.37871 * 119.99694 * 300.27906 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 O 1.45200 * 109.47076 * 295.00108 * 3 2 1 14 14 C 1.34225 * 117.00537 * 89.99893 * 13 3 2 15 15 O 1.20829 * 119.99778 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00501 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.46748 * 299.98197 * 16 14 13 18 18 C 1.53111 * 109.46517 * 59.95717 * 16 14 13 19 19 C 1.53375 * 109.49662 * 190.30173 * 18 16 14 20 20 C 1.50842 * 108.37226 * 310.01870 * 19 18 16 21 21 C 1.39303 * 127.89594 * 196.71440 * 20 19 18 22 22 N 1.31071 * 108.07222 * 179.84523 * 21 20 19 23 23 N 1.40297 * 108.27461 * 359.97438 * 22 21 20 24 24 C 1.46500 * 126.09344 * 180.02562 * 23 22 21 25 25 C 1.34325 * 107.81642 * 0.04926 * 23 22 21 26 26 C 1.50821 * 128.03513 * 179.91816 * 25 23 22 27 27 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47356 * 300.00124 * 1 2 3 29 29 H 1.09002 * 109.47262 * 59.99916 * 1 2 3 30 30 H 1.08995 * 109.47276 * 239.99767 * 2 1 3 31 31 H 1.09008 * 109.46821 * 119.99529 * 2 1 3 32 32 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.46444 * 310.30375 * 18 16 14 34 34 H 1.09000 * 109.46037 * 70.27802 * 18 16 14 35 35 H 1.09002 * 109.65455 * 190.31980 * 19 18 16 36 36 H 1.08998 * 109.75184 * 69.77589 * 19 18 16 37 37 H 1.07992 * 125.96278 * 359.80506 * 21 20 19 38 38 H 1.08992 * 109.47034 * 270.02612 * 24 23 22 39 39 H 1.09004 * 109.47085 * 30.02004 * 24 23 22 40 40 H 1.09000 * 109.47139 * 150.02222 * 24 23 22 41 41 H 1.08995 * 109.68301 * 76.80461 * 26 25 23 42 42 H 1.09007 * 109.70969 * 316.26769 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1434 0.8734 1.2252 8 7 3.4064 0.3321 2.1704 9 14 6.0054 0.8688 1.3750 10 1 6.4483 2.0983 2.0803 11 1 6.4372 -0.3258 2.1443 12 1 6.6110 0.8303 0.0197 13 8 1.6558 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2560 15 8 -0.2189 2.7377 -0.2654 16 6 0.0069 3.4215 -2.5088 17 1 0.7238 4.1959 -2.7820 18 6 -0.1029 2.4037 -3.6473 19 6 -0.3242 3.1413 -4.9737 20 6 -1.4542 4.1232 -4.7890 21 6 -2.2005 4.7643 -5.7752 22 7 -3.0838 5.5304 -5.1830 23 7 -2.9230 5.3962 -3.7957 24 6 -3.7095 6.0794 -2.7656 25 6 -1.9191 4.5302 -3.5802 26 6 -1.3658 4.0591 -2.2586 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8296 -0.0699 2.9451 33 1 0.8170 1.8219 -3.7043 34 1 -0.9436 1.7362 -3.4578 35 1 -0.5842 2.4246 -5.7528 36 1 0.5838 3.6751 -5.2543 37 1 -2.0729 4.6506 -6.8415 38 1 -3.2329 7.0265 -2.5132 39 1 -4.7152 6.2676 -3.1416 40 1 -3.7656 5.4523 -1.8759 41 1 -2.0393 3.3229 -1.8201 42 1 -1.2580 4.9070 -1.5820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798859714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:27 Heat of formation + Delta-G solvation = -30.281345 kcal Electronic energy + Delta-G solvation = -23870.882831 eV Core-core repulsion = 20430.987862 eV Total energy + Delta-G solvation = -3439.894969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.62518 -39.78224 -36.68433 -35.54375 -33.73827 -33.50739 -31.39136 -30.30523 -29.82867 -27.30390 -26.68655 -24.52955 -23.07795 -22.46504 -21.04934 -20.56320 -19.41404 -18.67769 -17.32319 -16.62325 -16.46712 -15.81394 -15.42069 -15.09593 -14.50326 -14.35741 -14.24573 -13.79673 -13.52441 -13.19451 -12.90809 -12.86689 -12.83146 -12.50934 -12.14043 -11.87287 -11.65917 -11.47195 -11.25321 -11.19326 -10.95880 -10.85833 -10.72207 -10.64511 -10.54642 -10.28949 -9.80021 -9.55577 -9.36705 -9.32041 -8.81719 -8.47000 -8.25558 -6.20106 -4.27193 1.78137 2.38176 2.73254 2.96839 3.23267 3.29081 3.32592 3.59174 4.30289 4.39736 4.59818 4.67737 4.88518 4.97187 5.01322 5.04891 5.12104 5.22388 5.32632 5.41323 5.48017 5.57610 5.76414 5.84530 5.86696 5.95623 6.20292 6.22007 6.24958 6.28454 6.29973 6.44638 6.61249 6.85432 6.93643 6.94805 7.15009 7.24702 7.60408 7.62989 7.72391 7.93471 8.14559 8.61719 8.87722 9.38280 10.86569 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028321 B = 0.003574 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.438953 B = 7833.399035 C = 8066.633246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.352 6.352 14 C 0.458 3.542 15 O -0.519 6.519 16 C -0.075 4.075 17 H 0.108 0.892 18 C -0.111 4.111 19 C -0.036 4.036 20 C -0.242 4.242 21 C 0.054 3.946 22 N -0.306 5.306 23 N -0.368 5.368 24 C 0.099 3.901 25 C 0.092 3.908 26 C -0.040 4.040 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.108 0.892 32 H 0.266 0.734 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.182 0.818 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.264 6.775 -11.486 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.268 6.268 14 C 0.301 3.699 15 O -0.409 6.409 16 C -0.095 4.095 17 H 0.126 0.874 18 C -0.149 4.149 19 C -0.075 4.075 20 C -0.254 4.254 21 C -0.130 4.130 22 N -0.127 5.127 23 N -0.150 5.150 24 C -0.043 4.043 25 C -0.037 4.037 26 C -0.079 4.079 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.199 0.801 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.474 7.564 -11.040 17.628 hybrid contribution 1.420 -0.525 0.452 1.580 sum -10.054 7.038 -10.588 16.209 Atomic orbital electron populations 1.21860 0.98409 0.98981 1.00719 1.22015 0.92602 0.99375 1.03388 1.20675 0.94984 0.88771 0.78677 0.93585 1.21051 0.89720 1.38811 1.06367 0.91316 1.24878 0.99204 0.94743 0.95091 1.69885 1.35379 1.37756 1.09567 0.86298 0.83944 0.77681 0.78373 1.20435 1.20961 1.19561 1.86464 1.34028 1.62241 1.44032 1.23064 0.80910 0.76912 0.89025 1.90602 1.55635 1.58679 1.36002 1.20937 0.96847 0.98865 0.92826 0.87410 1.21599 1.03726 0.96980 0.92592 1.19983 0.95047 0.95345 0.97078 1.19975 1.05704 1.08521 0.91173 1.23548 0.93986 0.95431 1.00061 1.77484 1.24411 1.24712 0.86136 1.48164 1.26939 1.34531 1.05357 1.21871 0.96158 0.97574 0.88647 1.20870 0.91564 0.93880 0.97378 1.20145 0.95588 1.01216 0.90934 0.94864 0.92897 0.94878 0.93939 0.87364 0.92399 0.89381 0.91278 0.90685 0.90868 0.80129 0.90696 0.89333 0.89296 0.88554 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.57 37.16 0.32 -2.71 16 2 C -0.14 -3.29 5.48 -26.73 -0.15 -3.43 16 3 C 0.22 5.71 2.25 -27.88 -0.06 5.64 16 4 H 0.05 1.32 7.16 -51.93 -0.37 0.95 16 5 C -0.52 -14.27 8.90 -34.44 -0.31 -14.58 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.67 11.28 55.43 0.63 -24.05 16 9 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 O -0.35 -7.93 9.52 -39.24 -0.37 -8.30 16 14 C 0.46 8.88 5.71 36.00 0.21 9.08 16 15 O -0.52 -11.17 12.97 -18.75 -0.24 -11.42 16 16 C -0.07 -1.07 2.60 -91.51 -0.24 -1.31 16 17 H 0.11 1.44 8.11 -51.93 -0.42 1.02 16 18 C -0.11 -1.41 5.19 -26.48 -0.14 -1.55 16 19 C -0.04 -0.39 6.28 -27.62 -0.17 -0.56 16 20 C -0.24 -2.95 5.91 -105.05 -0.62 -3.57 16 21 C 0.05 0.64 12.00 -17.48 -0.21 0.43 16 22 N -0.31 -4.08 12.59 30.54 0.38 -3.70 16 23 N -0.37 -4.53 4.00 -63.88 -0.26 -4.79 16 24 C 0.10 0.83 11.32 59.85 0.68 1.51 16 25 C 0.09 1.16 6.73 -82.33 -0.55 0.61 16 26 C -0.04 -0.51 4.56 -27.61 -0.13 -0.64 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 1.18 7.80 -51.92 -0.40 0.78 16 29 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 30 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.11 2.86 5.94 -51.92 -0.31 2.55 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.09 1.17 7.87 -51.93 -0.41 0.76 16 34 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.18 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.63 7.90 -51.93 -0.41 0.22 16 41 H 0.10 1.29 7.79 -51.93 -0.40 0.89 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -31.37 339.92 -7.62 -38.99 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.39 Total: 1.94 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -1.47 Total: -9.48 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.75 Total: -32.54 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.62 Total: -19.72 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.37 -7.62 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798859714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.708 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds