Wall clock time and date at job start Tue Mar 31 2020 06:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 H 1.09007 * 109.47427 * 54.99507 * 3 2 1 5 5 C 1.50701 * 109.47419 * 174.99846 * 3 2 1 6 6 H 1.08002 * 119.99761 * 119.99343 * 5 3 2 7 7 C 1.37871 * 119.99694 * 300.27906 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 O 1.45200 * 109.47076 * 295.00108 * 3 2 1 14 14 C 1.34225 * 117.00537 * 89.99893 * 13 3 2 15 15 O 1.20829 * 119.99778 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00501 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.46748 * 299.98197 * 16 14 13 18 18 C 1.53111 * 109.46517 * 59.95717 * 16 14 13 19 19 C 1.53375 * 109.49662 * 190.30173 * 18 16 14 20 20 C 1.50842 * 108.37226 * 310.01870 * 19 18 16 21 21 C 1.39303 * 127.89594 * 196.71440 * 20 19 18 22 22 N 1.31071 * 108.07222 * 179.84523 * 21 20 19 23 23 N 1.40297 * 108.27461 * 359.97438 * 22 21 20 24 24 C 1.46500 * 126.09344 * 180.02562 * 23 22 21 25 25 C 1.34325 * 107.81642 * 0.04926 * 23 22 21 26 26 C 1.50821 * 128.03513 * 179.91816 * 25 23 22 27 27 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47356 * 300.00124 * 1 2 3 29 29 H 1.09002 * 109.47262 * 59.99916 * 1 2 3 30 30 H 1.08995 * 109.47276 * 239.99767 * 2 1 3 31 31 H 1.09008 * 109.46821 * 119.99529 * 2 1 3 32 32 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.46444 * 310.30375 * 18 16 14 34 34 H 1.09000 * 109.46037 * 70.27802 * 18 16 14 35 35 H 1.09002 * 109.65455 * 190.31980 * 19 18 16 36 36 H 1.08998 * 109.75184 * 69.77589 * 19 18 16 37 37 H 1.07992 * 125.96278 * 359.80506 * 21 20 19 38 38 H 1.08992 * 109.47034 * 270.02612 * 24 23 22 39 39 H 1.09004 * 109.47085 * 30.02004 * 24 23 22 40 40 H 1.09000 * 109.47139 * 150.02222 * 24 23 22 41 41 H 1.08995 * 109.68301 * 76.80461 * 26 25 23 42 42 H 1.09007 * 109.70969 * 316.26769 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1434 0.8734 1.2252 8 7 3.4064 0.3321 2.1704 9 14 6.0054 0.8688 1.3750 10 1 6.4483 2.0983 2.0803 11 1 6.4372 -0.3258 2.1443 12 1 6.6110 0.8303 0.0197 13 8 1.6558 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2560 15 8 -0.2189 2.7377 -0.2654 16 6 0.0069 3.4215 -2.5088 17 1 0.7238 4.1959 -2.7820 18 6 -0.1029 2.4037 -3.6473 19 6 -0.3242 3.1413 -4.9737 20 6 -1.4542 4.1232 -4.7890 21 6 -2.2005 4.7643 -5.7752 22 7 -3.0838 5.5304 -5.1830 23 7 -2.9230 5.3962 -3.7957 24 6 -3.7095 6.0794 -2.7656 25 6 -1.9191 4.5302 -3.5802 26 6 -1.3658 4.0591 -2.2586 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8296 -0.0699 2.9451 33 1 0.8170 1.8219 -3.7043 34 1 -0.9436 1.7362 -3.4578 35 1 -0.5842 2.4246 -5.7528 36 1 0.5838 3.6751 -5.2543 37 1 -2.0729 4.6506 -6.8415 38 1 -3.2329 7.0265 -2.5132 39 1 -4.7152 6.2676 -3.1416 40 1 -3.7656 5.4523 -1.8759 41 1 -2.0393 3.3229 -1.8201 42 1 -1.2580 4.9070 -1.5820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798859714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:27 Heat of formation + Delta-G solvation = -47.237309 kcal Electronic energy + Delta-G solvation = -23871.618097 eV Core-core repulsion = 20430.987862 eV Total energy + Delta-G solvation = -3440.630235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.56554 -41.38469 -38.09830 -37.01221 -35.46125 -34.59786 -33.32752 -31.25375 -30.88564 -29.24327 -27.48827 -25.92793 -24.83981 -23.49807 -22.30610 -21.84351 -21.08031 -19.71272 -18.87888 -18.47615 -17.65530 -17.18444 -16.87057 -16.55953 -16.12082 -15.43880 -15.13965 -14.92918 -14.81341 -14.67531 -14.32999 -13.98004 -13.81714 -13.63337 -13.34688 -13.29775 -13.24100 -13.08389 -12.83545 -12.76776 -12.66691 -12.47243 -12.12208 -11.91751 -11.74763 -11.70367 -11.48625 -11.38185 -11.06394 -10.78243 -10.50183 -10.22435 -9.15339 -8.25446 -6.41816 0.86280 1.39383 1.43319 1.44691 1.53806 1.57326 1.85216 2.07177 2.43741 3.04378 3.45342 3.58338 3.74369 3.79252 3.98238 4.17413 4.32570 4.33581 4.38004 4.40494 4.42796 4.46855 4.54947 4.60948 4.62444 4.65336 4.86120 4.88440 4.94483 5.06614 5.11803 5.21782 5.24913 5.30864 5.38945 5.42920 5.54514 5.70774 5.77737 6.01751 6.07647 6.17641 6.63474 6.74057 7.03521 7.30286 8.81040 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028321 B = 0.003574 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.438953 B = 7833.399035 C = 8066.633246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.006 0.994 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.978 3.022 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.263 1.263 13 O -0.359 6.359 14 C 0.454 3.546 15 O -0.543 6.543 16 C -0.065 4.065 17 H 0.121 0.879 18 C -0.108 4.108 19 C -0.028 4.028 20 C -0.250 4.250 21 C 0.053 3.947 22 N -0.332 5.332 23 N -0.374 5.374 24 C 0.090 3.910 25 C 0.079 3.921 26 C -0.030 4.030 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.270 0.730 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.211 0.789 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.010 6.974 -13.141 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.801 3.199 10 H -0.199 1.199 11 H -0.202 1.202 12 H -0.187 1.187 13 O -0.275 6.275 14 C 0.298 3.702 15 O -0.434 6.434 16 C -0.084 4.084 17 H 0.139 0.861 18 C -0.146 4.146 19 C -0.066 4.066 20 C -0.261 4.261 21 C -0.130 4.130 22 N -0.154 5.154 23 N -0.156 5.156 24 C -0.051 4.051 25 C -0.051 4.051 26 C -0.069 4.069 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.228 0.772 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.245 7.777 -12.705 18.664 hybrid contribution 1.267 -0.541 0.981 1.691 sum -9.979 7.236 -11.724 17.011 Atomic orbital electron populations 1.21713 0.96248 1.00521 1.00190 1.21859 0.94485 0.98131 1.02317 1.20343 0.94382 0.89295 0.78743 0.97574 1.21352 0.90700 1.39655 1.06939 0.91574 1.25761 1.04012 0.93942 0.94452 1.70009 1.37343 1.37936 1.09956 0.85255 0.78021 0.77900 0.78695 1.19925 1.20189 1.18672 1.86453 1.35875 1.62872 1.42292 1.24085 0.79536 0.76098 0.90450 1.90591 1.55922 1.59416 1.37465 1.21019 0.97745 0.99107 0.90574 0.86078 1.21598 1.03345 0.96593 0.93025 1.19980 0.95107 0.95357 0.96116 1.20241 1.06058 1.08685 0.91105 1.24045 0.93070 0.94503 1.01428 1.77447 1.25422 1.25716 0.86776 1.48454 1.27037 1.34514 1.05613 1.22142 0.96502 0.98090 0.88324 1.20841 0.92324 0.94653 0.97232 1.19993 0.94459 1.01023 0.91458 0.92213 0.94660 0.94083 0.93479 0.89754 0.92118 0.89928 0.91561 0.88570 0.89701 0.77247 0.89558 0.88290 0.88313 0.89342 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 8.57 71.98 0.62 -4.89 16 2 C -0.13 -6.39 5.48 30.59 0.17 -6.22 16 3 C 0.23 11.97 2.25 29.85 0.07 12.03 16 4 H 0.01 0.39 7.16 -2.38 -0.02 0.37 16 5 C -0.55 -30.57 8.90 25.60 0.23 -30.34 16 6 H 0.07 3.61 7.81 -2.91 -0.02 3.59 16 7 C 0.02 0.98 5.29 84.65 0.45 1.43 16 8 N -0.91 -51.69 11.28 21.45 0.24 -51.45 16 9 Si 0.98 42.30 29.54 68.60 2.03 44.32 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 13 O -0.36 -16.40 9.52 -51.37 -0.49 -16.89 16 14 C 0.45 17.69 5.71 71.23 0.41 18.10 16 15 O -0.54 -23.88 12.97 21.95 0.28 -23.60 16 16 C -0.06 -1.79 2.60 -11.37 -0.03 -1.82 16 17 H 0.12 3.06 8.11 -2.39 -0.02 3.04 16 18 C -0.11 -2.55 5.19 30.76 0.16 -2.39 16 19 C -0.03 -0.51 6.28 30.02 0.19 -0.32 16 20 C -0.25 -5.50 5.91 -20.14 -0.12 -5.61 16 21 C 0.05 1.12 12.00 85.06 1.02 2.14 16 22 N -0.33 -8.28 12.59 -57.28 -0.72 -9.00 16 23 N -0.37 -8.68 4.00 -356.02 -1.43 -10.10 16 24 C 0.09 1.39 11.32 127.77 1.45 2.84 16 25 C 0.08 1.87 6.73 41.64 0.28 2.15 16 26 C -0.03 -0.76 4.56 30.02 0.14 -0.62 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.03 1.59 7.80 -2.38 -0.02 1.57 16 29 H 0.04 1.64 6.06 -2.39 -0.01 1.63 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.08 4.57 5.94 -2.38 -0.01 4.56 16 32 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.08 2.07 7.87 -2.39 -0.02 2.05 16 34 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.21 2.85 8.06 -2.91 -0.02 2.82 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.10 1.30 7.90 -2.39 -0.02 1.28 16 41 H 0.09 2.34 7.79 -2.39 -0.02 2.32 16 42 H 0.09 2.12 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -68.16 339.92 5.94 -62.21 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.01 Total: 18.02 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.02 Total: -13.53 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -1.90 Total: -70.55 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.20 Total: -40.48 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -68.16 5.94 -62.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798859714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.974 kcal (2) G-P(sol) polarization free energy of solvation -68.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds