Wall clock time and date at job start Tue Mar 31 2020 06:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.46967 * 2 1 4 4 H 1.08999 * 109.47363 * 55.00277 * 3 2 1 5 5 C 1.50703 * 109.47130 * 174.99980 * 3 2 1 6 6 H 1.08004 * 119.99411 * 120.00302 * 5 3 2 7 7 C 1.37877 * 120.00278 * 300.00372 * 5 3 2 8 8 N 1.31506 * 119.99569 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99974 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47087 * 60.00060 * 9 7 5 11 11 H 1.48501 * 109.47097 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47415 * 300.00053 * 9 7 5 13 13 O 1.45203 * 109.47581 * 295.00438 * 3 2 1 14 14 C 1.34222 * 117.00081 * 89.99623 * 13 3 2 15 15 O 1.20825 * 119.99938 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00069 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.71411 * 60.00166 * 16 14 13 18 18 C 1.53390 * 109.75543 * 180.63175 * 16 14 13 19 19 C 1.53015 * 109.72241 * 170.22608 * 18 16 14 20 20 C 1.53374 * 109.75189 * 288.27732 * 19 18 16 21 21 C 1.50948 * 108.20558 * 50.65242 * 20 19 18 22 22 N 1.30123 * 128.28679 * 163.16854 * 21 20 19 23 23 N 1.40312 * 108.12105 * 180.30046 * 22 21 20 24 24 C 1.46499 * 126.00341 * 179.97438 * 23 22 21 25 25 C 1.35200 * 107.99782 * 359.95048 * 23 22 21 26 26 C 1.34574 * 107.61525 * 359.96884 * 25 23 22 27 27 H 1.08999 * 109.47803 * 59.99552 * 1 2 3 28 28 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47569 * 299.99694 * 1 2 3 30 30 H 1.09005 * 109.46978 * 240.00560 * 2 1 3 31 31 H 1.08990 * 109.47546 * 120.00303 * 2 1 3 32 32 H 0.97001 * 119.99649 * 179.97438 * 8 7 5 33 33 H 1.08991 * 109.43197 * 290.30694 * 18 16 14 34 34 H 1.09001 * 109.42560 * 50.15497 * 18 16 14 35 35 H 1.09003 * 109.42734 * 168.18866 * 19 18 16 36 36 H 1.09008 * 109.37385 * 48.33414 * 19 18 16 37 37 H 1.08999 * 109.71829 * 290.96848 * 20 19 18 38 38 H 1.09003 * 109.71831 * 170.32573 * 20 19 18 39 39 H 1.09002 * 109.47685 * 89.97093 * 24 23 22 40 40 H 1.09001 * 109.47424 * 209.97303 * 24 23 22 41 41 H 1.09005 * 109.47301 * 329.97347 * 24 23 22 42 42 H 1.07993 * 126.19443 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1470 1.8890 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3374 2.1732 9 14 6.0049 0.8801 1.3810 10 1 6.5004 2.2800 1.3807 11 1 6.3979 0.2156 2.6496 12 1 6.5966 0.1454 0.2341 13 8 1.6557 2.0918 -1.2406 14 6 0.4726 2.7254 -1.2558 15 8 -0.2190 2.7376 -0.2651 16 6 0.0067 3.4217 -2.5085 17 1 -0.0736 2.7005 -3.3219 18 6 -1.3581 4.0766 -2.2608 19 6 -1.7186 4.9814 -3.4409 20 6 -0.8325 6.2332 -3.4239 21 6 0.6055 5.7914 -3.2990 22 7 1.6838 6.4779 -3.5422 23 7 2.7915 5.6535 -3.2931 24 6 4.1985 6.0331 -3.4427 25 6 2.3323 4.4473 -2.8904 26 6 0.9878 4.5049 -2.8837 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0611 2.9497 33 1 -2.1174 3.3023 -2.1524 34 1 -1.3146 4.6711 -1.3482 35 1 -2.7650 5.2769 -3.3648 36 1 -1.5620 4.4390 -4.3734 37 1 -1.0995 6.8611 -2.5739 38 1 -0.9666 6.7912 -4.3506 39 1 4.5652 6.4467 -2.5032 40 1 4.7861 5.1537 -3.7064 41 1 4.2913 6.7815 -4.2298 42 1 2.9353 3.5924 -2.6225 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798859737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:43 Heat of formation + Delta-G solvation = -28.889801 kcal Electronic energy + Delta-G solvation = -24379.782112 eV Core-core repulsion = 20939.947484 eV Total energy + Delta-G solvation = -3439.834627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38970 -39.51690 -36.76478 -35.48766 -33.52725 -32.60272 -31.86849 -31.22575 -28.51686 -27.43310 -26.96473 -24.17739 -23.07537 -21.88222 -21.24234 -20.17015 -19.33094 -18.66970 -17.02671 -16.75294 -16.23613 -15.63157 -15.19356 -15.15599 -14.70717 -14.49585 -14.31824 -13.64902 -13.06245 -12.92361 -12.82921 -12.68602 -12.63131 -12.35548 -12.04393 -11.60728 -11.43543 -11.32101 -11.21881 -11.08858 -10.96156 -10.88444 -10.77633 -10.65568 -10.30211 -10.26071 -9.78689 -9.52370 -9.34772 -9.05385 -8.80184 -8.46803 -8.11153 -6.20209 -4.27558 2.08983 2.61320 2.82165 3.18778 3.22058 3.26560 3.27989 3.79222 4.30818 4.42473 4.86538 4.90496 5.03813 5.10045 5.12378 5.21628 5.36363 5.42782 5.45557 5.55505 5.62726 5.75513 5.77448 5.89122 6.04060 6.11311 6.23925 6.26177 6.31960 6.34644 6.46580 6.48462 6.79219 6.89290 6.99704 7.18552 7.20251 7.30204 7.59686 7.74801 7.87912 7.97626 8.16038 8.65797 8.91407 9.37687 10.86461 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.005684 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.716323 B = 4925.080355 C = 6462.100324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.045 0.955 5 C -0.520 4.520 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.908 3.092 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.358 6.358 14 C 0.461 3.539 15 O -0.515 6.515 16 C 0.000 4.000 17 H 0.103 0.897 18 C -0.102 4.102 19 C -0.113 4.113 20 C -0.037 4.037 21 C 0.085 3.915 22 N -0.300 5.300 23 N -0.385 5.385 24 C 0.105 3.895 25 C 0.090 3.910 26 C -0.240 4.240 27 H 0.032 0.968 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.107 0.893 32 H 0.267 0.733 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.721 7.890 -11.802 14.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.063 0.937 5 C -0.558 4.558 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.735 3.265 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.274 6.274 14 C 0.303 3.697 15 O -0.405 6.405 16 C -0.020 4.020 17 H 0.121 0.879 18 C -0.140 4.140 19 C -0.151 4.151 20 C -0.076 4.076 21 C -0.083 4.083 22 N -0.121 5.121 23 N -0.167 5.167 24 C -0.036 4.036 25 C -0.055 4.055 26 C -0.252 4.252 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.125 0.875 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.193 8.928 -11.679 15.287 hybrid contribution 0.892 -0.972 0.634 1.463 sum -3.301 7.956 -11.045 14.007 Atomic orbital electron populations 1.21855 0.98374 0.98934 1.00801 1.22006 0.92660 0.99431 1.03243 1.20617 0.94806 0.88719 0.78920 0.93687 1.20955 0.89711 1.39062 1.06116 0.91654 1.24866 0.99030 0.94837 0.95130 1.69876 1.35405 1.37674 1.09442 0.86390 0.84133 0.78384 0.77546 1.20114 1.21010 1.19967 1.86418 1.34513 1.62531 1.43929 1.23170 0.80692 0.76421 0.89372 1.90592 1.55616 1.58521 1.35723 1.19371 0.93860 0.94466 0.94311 0.87879 1.21443 0.94284 0.99233 0.98993 1.21564 0.98988 0.95494 0.99021 1.20123 0.86655 0.97983 1.02863 1.22246 0.95169 0.92296 0.98613 1.76935 0.92188 1.17837 1.25184 1.48454 1.06050 1.09036 1.53113 1.21817 0.76030 1.02530 1.03229 1.22470 0.95438 0.90253 0.97336 1.19488 0.92837 0.96487 1.16346 0.94878 0.94895 0.92842 0.94037 0.87478 0.92339 0.90792 0.90528 0.90681 0.91380 0.89891 0.90159 0.90859 0.89305 0.89690 0.79482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.57 37.15 0.32 -2.77 16 2 C -0.14 -3.31 5.49 -26.74 -0.15 -3.45 16 3 C 0.22 5.74 2.25 -27.88 -0.06 5.68 16 4 H 0.05 1.32 7.16 -51.93 -0.37 0.95 16 5 C -0.52 -14.04 8.90 -34.44 -0.31 -14.34 16 6 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.69 11.29 55.43 0.63 -24.07 16 9 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 O -0.36 -8.10 8.25 -39.24 -0.32 -8.43 16 14 C 0.46 9.47 5.62 36.01 0.20 9.67 16 15 O -0.51 -11.82 13.00 -18.75 -0.24 -12.06 16 16 C 0.00 0.00 2.99 -92.63 -0.28 -0.27 16 17 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 18 C -0.10 -1.37 4.62 -26.52 -0.12 -1.49 16 19 C -0.11 -1.16 5.86 -26.53 -0.16 -1.31 16 20 C -0.04 -0.42 6.31 -27.57 -0.17 -0.60 16 21 C 0.09 1.29 7.10 -82.34 -0.58 0.71 16 22 N -0.30 -4.85 12.56 33.75 0.42 -4.43 16 23 N -0.38 -5.83 4.02 -68.29 -0.27 -6.11 16 24 C 0.11 1.12 11.47 59.85 0.69 1.81 16 25 C 0.09 1.48 10.70 -17.36 -0.19 1.29 16 26 C -0.24 -3.91 5.41 -104.98 -0.57 -4.48 16 27 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 1.22 7.80 -51.93 -0.40 0.82 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.11 2.85 5.95 -51.93 -0.31 2.54 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.16 7.76 -51.93 -0.40 0.76 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.66 8.10 -51.92 -0.42 0.24 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.19 3.12 7.05 -52.49 -0.37 2.75 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -31.54 337.97 -7.56 -39.10 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.37 Total: 3.34 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.47 Total: -7.95 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.77 Total: -34.60 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.57 Total: -20.49 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.54 -7.56 -39.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798859737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.207 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds