Wall clock time and date at job start Tue Mar 31 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.46967 * 2 1 4 4 H 1.08999 * 109.47363 * 55.00277 * 3 2 1 5 5 C 1.50703 * 109.47130 * 174.99980 * 3 2 1 6 6 H 1.08004 * 119.99411 * 120.00302 * 5 3 2 7 7 C 1.37877 * 120.00278 * 300.00372 * 5 3 2 8 8 N 1.31506 * 119.99569 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99974 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47087 * 60.00060 * 9 7 5 11 11 H 1.48501 * 109.47097 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47415 * 300.00053 * 9 7 5 13 13 O 1.45203 * 109.47581 * 295.00438 * 3 2 1 14 14 C 1.34222 * 117.00081 * 89.99623 * 13 3 2 15 15 O 1.20825 * 119.99938 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00069 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.71411 * 60.00166 * 16 14 13 18 18 C 1.53390 * 109.75543 * 180.63175 * 16 14 13 19 19 C 1.53015 * 109.72241 * 170.22608 * 18 16 14 20 20 C 1.53374 * 109.75189 * 288.27732 * 19 18 16 21 21 C 1.50948 * 108.20558 * 50.65242 * 20 19 18 22 22 N 1.30123 * 128.28679 * 163.16854 * 21 20 19 23 23 N 1.40312 * 108.12105 * 180.30046 * 22 21 20 24 24 C 1.46499 * 126.00341 * 179.97438 * 23 22 21 25 25 C 1.35200 * 107.99782 * 359.95048 * 23 22 21 26 26 C 1.34574 * 107.61525 * 359.96884 * 25 23 22 27 27 H 1.08999 * 109.47803 * 59.99552 * 1 2 3 28 28 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47569 * 299.99694 * 1 2 3 30 30 H 1.09005 * 109.46978 * 240.00560 * 2 1 3 31 31 H 1.08990 * 109.47546 * 120.00303 * 2 1 3 32 32 H 0.97001 * 119.99649 * 179.97438 * 8 7 5 33 33 H 1.08991 * 109.43197 * 290.30694 * 18 16 14 34 34 H 1.09001 * 109.42560 * 50.15497 * 18 16 14 35 35 H 1.09003 * 109.42734 * 168.18866 * 19 18 16 36 36 H 1.09008 * 109.37385 * 48.33414 * 19 18 16 37 37 H 1.08999 * 109.71829 * 290.96848 * 20 19 18 38 38 H 1.09003 * 109.71831 * 170.32573 * 20 19 18 39 39 H 1.09002 * 109.47685 * 89.97093 * 24 23 22 40 40 H 1.09001 * 109.47424 * 209.97303 * 24 23 22 41 41 H 1.09005 * 109.47301 * 329.97347 * 24 23 22 42 42 H 1.07993 * 126.19443 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1470 1.8890 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3374 2.1732 9 14 6.0049 0.8801 1.3810 10 1 6.5004 2.2800 1.3807 11 1 6.3979 0.2156 2.6496 12 1 6.5966 0.1454 0.2341 13 8 1.6557 2.0918 -1.2406 14 6 0.4726 2.7254 -1.2558 15 8 -0.2190 2.7376 -0.2651 16 6 0.0067 3.4217 -2.5085 17 1 -0.0736 2.7005 -3.3219 18 6 -1.3581 4.0766 -2.2608 19 6 -1.7186 4.9814 -3.4409 20 6 -0.8325 6.2332 -3.4239 21 6 0.6055 5.7914 -3.2990 22 7 1.6838 6.4779 -3.5422 23 7 2.7915 5.6535 -3.2931 24 6 4.1985 6.0331 -3.4427 25 6 2.3323 4.4473 -2.8904 26 6 0.9878 4.5049 -2.8837 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0611 2.9497 33 1 -2.1174 3.3023 -2.1524 34 1 -1.3146 4.6711 -1.3482 35 1 -2.7650 5.2769 -3.3648 36 1 -1.5620 4.4390 -4.3734 37 1 -1.0995 6.8611 -2.5739 38 1 -0.9666 6.7912 -4.3506 39 1 4.5652 6.4467 -2.5032 40 1 4.7861 5.1537 -3.7064 41 1 4.2913 6.7815 -4.2298 42 1 2.9353 3.5924 -2.6225 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798859737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:42 Heat of formation + Delta-G solvation = -46.281147 kcal Electronic energy + Delta-G solvation = -24380.536257 eV Core-core repulsion = 20939.947484 eV Total energy + Delta-G solvation = -3440.588773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.59061 -41.20108 -38.12489 -37.04931 -35.47732 -33.79040 -33.34049 -32.74451 -29.73845 -29.26317 -28.08060 -25.67684 -24.74845 -23.03560 -22.56573 -21.79471 -20.99316 -19.77144 -18.81491 -18.48016 -17.67551 -17.25493 -16.67570 -16.53889 -16.21169 -15.63529 -15.59695 -14.85600 -14.80652 -14.57920 -13.98065 -13.84487 -13.70582 -13.56143 -13.40116 -13.30193 -13.20706 -13.05090 -12.78355 -12.67067 -12.53040 -12.22708 -12.10569 -11.96631 -11.75823 -11.70176 -11.46505 -11.37328 -11.05106 -10.77900 -10.50091 -10.20752 -9.32132 -8.25504 -6.41883 0.87831 1.35398 1.41455 1.44068 1.52083 1.63826 1.70417 2.16996 2.46203 3.04387 3.36860 3.75549 3.86053 4.02459 4.13815 4.19003 4.32036 4.38526 4.40465 4.42152 4.43345 4.48165 4.63158 4.65417 4.67995 4.72916 4.87540 4.95048 5.03000 5.11923 5.15063 5.21801 5.25238 5.28245 5.43044 5.47954 5.53285 5.69512 5.70846 6.02200 6.06929 6.18645 6.63162 6.70951 7.07233 7.30498 8.81044 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.005684 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.716323 B = 4925.080355 C = 6462.100324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.227 3.773 4 H 0.000 1.000 5 C -0.544 4.544 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.977 3.023 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.262 1.262 13 O -0.358 6.358 14 C 0.455 3.545 15 O -0.543 6.543 16 C 0.008 3.992 17 H 0.126 0.874 18 C -0.100 4.100 19 C -0.102 4.102 20 C -0.038 4.038 21 C 0.082 3.918 22 N -0.319 5.319 23 N -0.387 5.387 24 C 0.095 3.905 25 C 0.074 3.926 26 C -0.257 4.257 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.269 0.731 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 8.431 -13.639 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.581 4.581 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.800 3.200 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.187 1.187 13 O -0.275 6.275 14 C 0.299 3.701 15 O -0.434 6.434 16 C -0.012 4.012 17 H 0.143 0.857 18 C -0.137 4.137 19 C -0.139 4.139 20 C -0.077 4.077 21 C -0.086 4.086 22 N -0.141 5.141 23 N -0.169 5.169 24 C -0.045 4.045 25 C -0.072 4.072 26 C -0.268 4.268 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.299 9.487 -13.540 17.083 hybrid contribution 0.919 -1.098 1.224 1.884 sum -3.380 8.389 -12.316 15.281 Atomic orbital electron populations 1.21710 0.96318 1.00528 1.00146 1.21858 0.94474 0.98213 1.02250 1.20292 0.94447 0.89119 0.78785 0.98238 1.21277 0.90453 1.39670 1.06743 0.91338 1.25770 1.03927 0.94067 0.94498 1.70016 1.37411 1.38057 1.09876 0.85326 0.78104 0.78677 0.77876 1.19481 1.20600 1.18688 1.86428 1.35997 1.62906 1.42127 1.24236 0.79477 0.75605 0.90751 1.90577 1.56113 1.59399 1.37265 1.19540 0.94956 0.94612 0.92115 0.85674 1.21490 0.92890 0.99682 0.99673 1.21554 1.00357 0.94245 0.97763 1.20334 0.84387 0.98820 1.04181 1.22831 0.96657 0.91511 0.97595 1.76893 0.92764 1.18472 1.25946 1.48802 1.07269 1.08425 1.52384 1.22151 0.74193 1.03982 1.04131 1.22482 0.95861 0.90780 0.98069 1.19664 0.92892 0.97262 1.17020 0.94138 0.92081 0.94810 0.93445 0.89823 0.92198 0.89962 0.92747 0.87589 0.90131 0.89405 0.87937 0.90521 0.87526 0.87885 0.80379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.57 71.98 0.62 -5.04 16 2 C -0.13 -6.48 5.49 30.59 0.17 -6.31 16 3 C 0.23 12.17 2.25 29.85 0.07 12.24 16 4 H 0.00 -0.01 7.16 -2.39 -0.02 -0.03 16 5 C -0.54 -30.00 8.90 25.60 0.23 -29.77 16 6 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 7 C 0.02 0.93 5.29 84.66 0.45 1.37 16 8 N -0.92 -52.22 11.29 21.45 0.24 -51.98 16 9 Si 0.98 42.09 29.54 68.60 2.03 44.11 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 13 O -0.36 -16.65 8.25 -51.34 -0.42 -17.07 16 14 C 0.45 19.00 5.62 71.24 0.40 19.40 16 15 O -0.54 -25.66 13.00 21.97 0.29 -25.38 16 16 C 0.01 0.24 2.99 -12.10 -0.04 0.20 16 17 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 18 C -0.10 -2.53 4.62 30.73 0.14 -2.39 16 19 C -0.10 -1.75 5.86 30.72 0.18 -1.57 16 20 C -0.04 -0.77 6.31 30.05 0.19 -0.58 16 21 C 0.08 2.38 7.10 43.44 0.31 2.69 16 22 N -0.32 -9.96 12.56 -47.13 -0.59 -10.55 16 23 N -0.39 -11.50 4.02 -369.97 -1.49 -12.99 16 24 C 0.10 1.92 11.47 127.77 1.47 3.39 16 25 C 0.07 2.43 10.70 83.33 0.89 3.32 16 26 C -0.26 -8.21 5.41 -20.10 -0.11 -8.32 16 27 H 0.04 1.67 6.06 -2.39 -0.01 1.65 16 28 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.03 1.57 7.80 -2.39 -0.02 1.55 16 30 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.08 4.59 5.95 -2.39 -0.01 4.58 16 32 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.62 7.76 -2.39 -0.02 1.60 16 35 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.24 8.10 -2.38 -0.02 1.22 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.18 6.09 7.05 -2.91 -0.02 6.07 16 Total: -1.00 -70.00 337.97 6.02 -63.98 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 1.01 Total: 21.24 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 4.96 Total: -11.36 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -1.84 Total: -75.52 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -0.14 Total: -42.45 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -70.00 6.02 -63.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798859737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.698 kcal (2) G-P(sol) polarization free energy of solvation -69.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds