Wall clock time and date at job start Tue Mar 31 2020 07:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 120.00053 * 2 1 4 4 C 1.52997 * 109.47127 * 89.99427 * 3 2 1 5 5 C 1.53001 * 109.47353 * 304.99645 * 4 3 2 6 6 O 1.42894 * 109.47499 * 65.00086 * 4 3 2 7 7 C 1.50706 * 109.46831 * 185.00335 * 4 3 2 8 8 C 1.38237 * 119.99744 * 210.00383 * 7 4 3 9 9 C 1.38235 * 119.99712 * 180.02562 * 8 7 4 10 10 C 1.38234 * 120.00220 * 359.94731 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00223 * 30.01594 * 7 4 3 13 13 C 1.34779 * 119.99924 * 179.97438 * 2 1 3 14 14 O 1.21585 * 119.99929 * 180.02562 * 13 2 1 15 15 N 1.34779 * 120.00178 * 0.02562 * 13 2 1 16 16 C 1.46500 * 120.00130 * 179.97438 * 15 13 2 17 17 C 1.50696 * 109.47161 * 180.02562 * 16 15 13 18 18 H 1.08011 * 119.99595 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00341 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00627 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99755 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47259 * 89.99493 * 21 19 17 23 23 H 1.48498 * 109.47035 * 209.99699 * 21 19 17 24 24 H 1.48500 * 109.46870 * 329.99360 * 21 19 17 25 25 H 1.08997 * 109.46627 * 90.00363 * 1 2 3 26 26 H 1.09001 * 109.47223 * 210.00162 * 1 2 3 27 27 H 1.08996 * 109.47484 * 330.00689 * 1 2 3 28 28 H 1.09007 * 109.46653 * 329.99521 * 3 2 1 29 29 H 1.08997 * 109.46689 * 209.99488 * 3 2 1 30 30 H 1.08993 * 109.47154 * 300.00362 * 5 4 3 31 31 H 1.09001 * 109.46664 * 60.00290 * 5 4 3 32 32 H 1.08998 * 109.47218 * 179.97438 * 5 4 3 33 33 H 0.96705 * 113.99982 * 59.99764 * 6 4 3 34 34 H 1.08005 * 120.00088 * 359.97438 * 8 7 4 35 35 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 38 38 H 1.07998 * 119.99975 * 0.02562 * 12 7 4 39 39 H 0.97005 * 119.99626 * 359.97438 * 15 13 2 40 40 H 1.08998 * 109.47277 * 300.00340 * 16 15 13 41 41 H 1.09002 * 109.46719 * 60.00240 * 16 15 13 42 42 H 0.96996 * 120.00122 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 6 1.1240 1.7731 2.1990 6 8 3.3208 0.7727 2.0815 7 6 3.0961 3.0732 1.4442 8 6 3.9591 3.4286 2.4640 9 6 4.5490 4.6787 2.4658 10 6 4.2770 5.5730 1.4474 11 6 3.4103 5.2193 0.4302 12 6 2.8234 3.9677 0.4262 13 6 2.1389 -1.1672 0.0005 14 8 3.3548 -1.1672 0.0010 15 7 1.4651 -2.3345 0.0005 16 6 2.1975 -3.6032 0.0005 17 6 1.2183 -4.7486 -0.0001 18 1 0.1564 -4.5512 -0.0009 19 6 1.6778 -6.0485 -0.0008 20 7 0.8232 -7.0481 -0.0018 21 14 3.5144 -6.3898 -0.0001 22 1 4.0005 -6.4811 1.4001 23 1 3.7798 -7.6719 -0.7008 24 1 4.2229 -5.2878 -0.6992 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6084 2.0284 -0.5140 29 1 3.1500 1.1383 -0.5138 30 1 0.4617 2.4885 1.7116 31 1 0.6585 0.7875 2.1977 32 1 1.3057 2.0874 3.2268 33 1 4.1836 0.6812 1.6544 34 1 4.1716 2.7299 3.2597 35 1 5.2229 4.9566 3.2627 36 1 4.7383 6.5495 1.4487 37 1 3.1943 5.9195 -0.3631 38 1 2.1488 3.6902 -0.3702 39 1 0.4950 -2.3344 0.0005 40 1 2.8242 -3.6609 -0.8894 41 1 2.8242 -3.6609 0.8906 42 1 1.1466 -7.9626 -0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824523697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:14 Heat of formation + Delta-G solvation = -42.496381 kcal Electronic energy + Delta-G solvation = -23664.667884 eV Core-core repulsion = 20224.243231 eV Total energy + Delta-G solvation = -3440.424653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.39229 -39.23542 -37.18829 -34.94486 -34.22723 -32.55203 -32.10367 -31.06645 -29.49790 -28.24965 -27.52935 -25.31217 -23.41380 -22.65241 -21.77969 -20.35758 -19.39795 -18.03541 -17.65981 -16.64120 -16.34564 -15.84812 -15.71585 -15.08514 -14.63663 -14.56965 -14.24393 -13.94259 -13.74173 -13.35567 -13.25871 -13.02993 -12.89025 -12.62155 -12.34578 -12.28320 -12.07784 -11.91348 -11.71688 -11.52047 -11.25167 -10.92428 -10.87940 -10.71295 -10.17152 -9.92070 -9.46870 -9.39138 -9.12460 -8.99265 -8.72744 -8.38832 -7.88740 -6.16951 -4.18371 1.11622 1.19893 3.10794 3.31522 3.38015 3.46995 3.56798 3.85623 4.25617 4.38134 4.47587 4.66264 4.70930 4.79221 4.84636 4.94711 5.02910 5.18678 5.18985 5.25727 5.34611 5.40829 5.52817 5.69564 5.72441 5.75208 5.77309 5.86094 5.88722 6.12927 6.24818 6.30758 6.39853 6.64616 6.78534 6.86184 7.18375 7.30447 7.46222 7.54854 7.82804 8.30693 8.72724 8.85041 9.27708 9.45685 10.95111 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030618 B = 0.003394 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.286364 B = 8248.465431 C = 8668.165687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.633 5.633 3 C 0.114 3.886 4 C 0.155 3.845 5 C -0.134 4.134 6 O -0.539 6.539 7 C -0.109 4.109 8 C -0.101 4.101 9 C -0.121 4.121 10 C -0.123 4.123 11 C -0.121 4.121 12 C -0.116 4.116 13 C 0.703 3.297 14 O -0.598 6.598 15 N -0.723 5.723 16 C 0.239 3.761 17 C -0.541 4.541 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.894 5.894 21 Si 0.878 3.122 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.382 0.618 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.391 0.609 40 H 0.021 0.979 41 H 0.018 0.982 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.482 25.457 2.016 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.371 5.371 3 C -0.011 4.011 4 C 0.112 3.888 5 C -0.191 4.191 6 O -0.345 6.345 7 C -0.110 4.110 8 C -0.119 4.119 9 C -0.140 4.140 10 C -0.141 4.141 11 C -0.139 4.139 12 C -0.134 4.134 13 C 0.404 3.596 14 O -0.477 6.477 15 N -0.376 5.376 16 C 0.116 3.884 17 C -0.579 4.579 18 H 0.096 0.904 19 C -0.126 4.126 20 N -0.532 5.532 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.184 1.184 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.230 0.770 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.226 0.774 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.841 25.108 2.400 25.290 hybrid contribution 0.805 -0.155 -0.355 0.893 sum 2.647 24.953 2.045 25.177 Atomic orbital electron populations 1.21829 0.80393 1.03074 1.01526 1.46823 1.05771 1.04678 1.79878 1.21955 0.98500 0.84885 0.95770 1.20433 0.90809 0.84313 0.93196 1.21806 0.94231 1.02799 1.00251 1.86544 1.29671 1.62155 1.56166 1.20604 0.98229 0.96757 0.95388 1.21066 0.96187 0.96374 0.98291 1.21176 1.00017 0.94024 0.98735 1.21169 0.98534 0.99553 0.94881 1.21132 0.97573 0.96503 0.98736 1.21129 1.00304 0.93768 0.98172 1.15941 0.85396 0.80366 0.77853 1.90797 1.11785 1.86259 1.58907 1.45504 1.09810 1.04999 1.77302 1.19332 0.92850 0.79669 0.96543 1.21097 0.94358 0.89404 1.52995 0.90422 1.24777 0.98151 0.95783 0.93925 1.69881 1.34405 0.99166 1.49749 0.86804 0.85553 0.78202 0.79050 1.19857 1.21015 1.18448 0.92972 0.91053 0.91040 0.90201 0.89502 0.91501 0.90782 0.92086 0.76990 0.85334 0.86123 0.86280 0.86094 0.85771 0.77404 0.96061 0.96369 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 8.98 59.85 0.54 1.39 16 2 N -0.63 -9.39 2.46 -187.35 -0.46 -9.85 16 3 C 0.11 1.41 4.19 -4.04 -0.02 1.40 16 4 C 0.16 1.87 1.01 -91.77 -0.09 1.78 16 5 C -0.13 -1.48 7.45 37.16 0.28 -1.20 16 6 O -0.54 -8.14 10.83 -43.02 -0.47 -8.60 16 7 C -0.11 -1.16 4.81 -104.62 -0.50 -1.67 16 8 C -0.10 -1.07 9.35 -39.58 -0.37 -1.44 16 9 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 10 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 11 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 12 C -0.12 -1.08 9.14 -39.58 -0.36 -1.44 16 13 C 0.70 14.13 7.91 -86.91 -0.69 13.44 16 14 O -0.60 -13.83 14.90 -2.49 -0.04 -13.87 16 15 N -0.72 -15.43 5.41 -66.42 -0.36 -15.79 16 16 C 0.24 6.08 4.50 -5.20 -0.02 6.05 16 17 C -0.54 -15.12 9.83 -34.45 -0.34 -15.46 16 18 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 20 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 21 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.85 6.36 -51.93 -0.33 0.52 16 27 H 0.07 0.62 6.03 -51.93 -0.31 0.31 16 28 H 0.08 0.75 6.14 -51.93 -0.32 0.43 16 29 H 0.09 1.23 7.42 -51.93 -0.39 0.85 16 30 H 0.07 0.58 7.83 -51.93 -0.41 0.18 16 31 H 0.07 0.91 6.12 -51.93 -0.32 0.59 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.38 5.52 8.74 45.56 0.40 5.92 16 34 H 0.13 1.38 7.49 -52.48 -0.39 0.98 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.12 0.95 6.05 -52.49 -0.32 0.64 16 39 H 0.39 7.45 6.05 -40.82 -0.25 7.20 16 40 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 41 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -33.76 338.15 -8.08 -41.84 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.09 Total: 9.47 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.87 Total: 0.60 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.05 Total: -51.73 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.50 Total: -22.47 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.76 -8.08 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824523697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.654 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds