Wall clock time and date at job start Tue Mar 31 2020 07:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 120.00053 * 2 1 4 4 C 1.52997 * 109.47127 * 89.99427 * 3 2 1 5 5 C 1.53001 * 109.47353 * 304.99645 * 4 3 2 6 6 O 1.42894 * 109.47499 * 65.00086 * 4 3 2 7 7 C 1.50706 * 109.46831 * 185.00335 * 4 3 2 8 8 C 1.38237 * 119.99744 * 210.00383 * 7 4 3 9 9 C 1.38235 * 119.99712 * 180.02562 * 8 7 4 10 10 C 1.38234 * 120.00220 * 359.94731 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00223 * 30.01594 * 7 4 3 13 13 C 1.34779 * 119.99924 * 179.97438 * 2 1 3 14 14 O 1.21585 * 119.99929 * 180.02562 * 13 2 1 15 15 N 1.34779 * 120.00178 * 0.02562 * 13 2 1 16 16 C 1.46500 * 120.00130 * 179.97438 * 15 13 2 17 17 C 1.50696 * 109.47161 * 180.02562 * 16 15 13 18 18 H 1.08011 * 119.99595 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00341 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00627 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99755 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47259 * 89.99493 * 21 19 17 23 23 H 1.48498 * 109.47035 * 209.99699 * 21 19 17 24 24 H 1.48500 * 109.46870 * 329.99360 * 21 19 17 25 25 H 1.08997 * 109.46627 * 90.00363 * 1 2 3 26 26 H 1.09001 * 109.47223 * 210.00162 * 1 2 3 27 27 H 1.08996 * 109.47484 * 330.00689 * 1 2 3 28 28 H 1.09007 * 109.46653 * 329.99521 * 3 2 1 29 29 H 1.08997 * 109.46689 * 209.99488 * 3 2 1 30 30 H 1.08993 * 109.47154 * 300.00362 * 5 4 3 31 31 H 1.09001 * 109.46664 * 60.00290 * 5 4 3 32 32 H 1.08998 * 109.47218 * 179.97438 * 5 4 3 33 33 H 0.96705 * 113.99982 * 59.99764 * 6 4 3 34 34 H 1.08005 * 120.00088 * 359.97438 * 8 7 4 35 35 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 38 38 H 1.07998 * 119.99975 * 0.02562 * 12 7 4 39 39 H 0.97005 * 119.99626 * 359.97438 * 15 13 2 40 40 H 1.08998 * 109.47277 * 300.00340 * 16 15 13 41 41 H 1.09002 * 109.46719 * 60.00240 * 16 15 13 42 42 H 0.96996 * 120.00122 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 6 1.1240 1.7731 2.1990 6 8 3.3208 0.7727 2.0815 7 6 3.0961 3.0732 1.4442 8 6 3.9591 3.4286 2.4640 9 6 4.5490 4.6787 2.4658 10 6 4.2770 5.5730 1.4474 11 6 3.4103 5.2193 0.4302 12 6 2.8234 3.9677 0.4262 13 6 2.1389 -1.1672 0.0005 14 8 3.3548 -1.1672 0.0010 15 7 1.4651 -2.3345 0.0005 16 6 2.1975 -3.6032 0.0005 17 6 1.2183 -4.7486 -0.0001 18 1 0.1564 -4.5512 -0.0009 19 6 1.6778 -6.0485 -0.0008 20 7 0.8232 -7.0481 -0.0018 21 14 3.5144 -6.3898 -0.0001 22 1 4.0005 -6.4811 1.4001 23 1 3.7798 -7.6719 -0.7008 24 1 4.2229 -5.2878 -0.6992 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6084 2.0284 -0.5140 29 1 3.1500 1.1383 -0.5138 30 1 0.4617 2.4885 1.7116 31 1 0.6585 0.7875 2.1977 32 1 1.3057 2.0874 3.2268 33 1 4.1836 0.6812 1.6544 34 1 4.1716 2.7299 3.2597 35 1 5.2229 4.9566 3.2627 36 1 4.7383 6.5495 1.4487 37 1 3.1943 5.9195 -0.3631 38 1 2.1488 3.6902 -0.3702 39 1 0.4950 -2.3344 0.0005 40 1 2.8242 -3.6609 -0.8894 41 1 2.8242 -3.6609 0.8906 42 1 1.1466 -7.9626 -0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824523697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:13 Heat of formation + Delta-G solvation = -66.086550 kcal Electronic energy + Delta-G solvation = -23665.690831 eV Core-core repulsion = 20224.243231 eV Total energy + Delta-G solvation = -3441.447599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49561 -40.38079 -38.22021 -36.22981 -36.09850 -34.37587 -33.30514 -31.75729 -30.47673 -29.76847 -28.79242 -26.54527 -24.42769 -23.78419 -23.13757 -21.42043 -20.88340 -19.51560 -18.60655 -18.30300 -17.62923 -17.17945 -16.78033 -16.32953 -16.04019 -15.65442 -15.39127 -15.29274 -14.82997 -14.72133 -14.39420 -14.27278 -14.16108 -13.94808 -13.65556 -13.41971 -13.18184 -13.02681 -12.72204 -12.68758 -12.66922 -12.48066 -12.05062 -11.91600 -11.71561 -11.63225 -11.21942 -11.02949 -10.90833 -10.00324 -9.80881 -9.71206 -9.29684 -8.39284 -6.45724 0.41527 0.51187 1.33682 1.35153 1.48947 1.80813 2.29173 2.29962 2.87530 2.96434 3.18063 3.34326 3.66759 3.86027 3.94278 4.14591 4.18574 4.26544 4.31554 4.46366 4.59798 4.65198 4.69392 4.73588 4.82850 4.86745 4.88539 4.91762 5.07673 5.09081 5.17679 5.24780 5.26460 5.54708 5.59911 5.60306 5.63879 5.69388 5.95886 6.11858 6.22221 6.55367 6.75219 7.13726 7.22983 7.72944 8.75523 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030618 B = 0.003394 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.286364 B = 8248.465431 C = 8668.165687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.623 5.623 3 C 0.112 3.888 4 C 0.154 3.846 5 C -0.132 4.132 6 O -0.563 6.563 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.129 4.129 10 C -0.126 4.126 11 C -0.123 4.123 12 C -0.120 4.120 13 C 0.698 3.302 14 O -0.634 6.634 15 N -0.726 5.726 16 C 0.254 3.746 17 C -0.544 4.544 18 H 0.058 0.942 19 C 0.027 3.973 20 N -0.931 5.931 21 Si 0.938 3.062 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.261 1.261 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.379 0.621 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.401 0.599 40 H 0.009 0.991 41 H 0.005 0.995 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 28.019 1.376 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.359 5.359 3 C -0.011 4.011 4 C 0.112 3.888 5 C -0.189 4.189 6 O -0.369 6.369 7 C -0.120 4.120 8 C -0.138 4.138 9 C -0.147 4.147 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.138 4.138 13 C 0.399 3.601 14 O -0.516 6.516 15 N -0.381 5.381 16 C 0.130 3.870 17 C -0.582 4.582 18 H 0.076 0.924 19 C -0.173 4.173 20 N -0.570 5.570 21 Si 0.762 3.238 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.185 1.185 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.227 0.773 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.238 0.762 40 H 0.027 0.973 41 H 0.022 0.978 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.705 27.726 1.762 27.834 hybrid contribution 0.761 -0.825 -0.146 1.132 sum 2.466 26.901 1.616 27.062 Atomic orbital electron populations 1.22111 0.77895 1.04339 1.03096 1.46834 1.07318 1.03672 1.78110 1.22171 0.98183 0.84401 0.96370 1.20546 0.90874 0.84640 0.92719 1.21839 0.94063 1.02735 1.00253 1.86521 1.29939 1.63441 1.57041 1.20471 0.98970 0.96251 0.96351 1.21090 0.97184 0.97062 0.98446 1.21402 1.00089 0.93597 0.99610 1.21518 0.98187 1.00331 0.94314 1.21486 0.96850 0.96550 0.99214 1.21343 1.00629 0.93864 0.97977 1.16119 0.85096 0.81253 0.77648 1.90768 1.13463 1.86989 1.60337 1.45254 1.10213 1.04433 1.78180 1.18882 0.92123 0.80828 0.95169 1.21267 0.93955 0.90477 1.52533 0.92425 1.25567 1.02466 0.95677 0.93575 1.69975 1.36437 0.99781 1.50801 0.85851 0.80249 0.78338 0.79395 1.19147 1.19634 1.18544 0.91161 0.91938 0.87727 0.86224 0.91464 0.88481 0.92201 0.92737 0.77326 0.86645 0.84721 0.83933 0.83567 0.84000 0.76194 0.97345 0.97754 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 8.98 127.77 1.15 2.51 16 2 N -0.62 -17.64 2.46 -864.90 -2.13 -19.77 16 3 C 0.11 2.60 4.19 86.38 0.36 2.96 16 4 C 0.15 3.58 1.01 -11.54 -0.01 3.57 16 5 C -0.13 -2.69 7.45 71.98 0.54 -2.16 16 6 O -0.56 -17.47 10.83 -141.54 -1.53 -19.00 16 7 C -0.12 -2.40 4.81 -19.86 -0.10 -2.50 16 8 C -0.12 -2.48 9.35 22.27 0.21 -2.28 16 9 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 10 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 11 C -0.12 -1.69 10.05 22.27 0.22 -1.46 16 12 C -0.12 -1.90 9.14 22.27 0.20 -1.70 16 13 C 0.70 28.05 7.91 179.05 1.42 29.46 16 14 O -0.63 -29.79 14.90 3.46 0.05 -29.74 16 15 N -0.73 -31.22 5.41 -482.30 -2.61 -33.83 16 16 C 0.25 13.13 4.50 85.63 0.38 13.51 16 17 C -0.54 -30.97 9.83 25.60 0.25 -30.71 16 18 H 0.06 3.43 7.84 -2.90 -0.02 3.41 16 19 C 0.03 1.58 5.47 84.65 0.46 2.05 16 20 N -0.93 -56.42 13.96 21.44 0.30 -56.12 16 21 Si 0.94 45.30 27.47 68.60 1.88 47.19 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.26 -12.58 6.54 99.48 0.65 -11.93 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.40 6.36 -2.39 -0.02 1.38 16 27 H 0.10 1.43 6.03 -2.39 -0.01 1.41 16 28 H 0.12 1.81 6.14 -2.38 -0.01 1.79 16 29 H 0.07 1.87 7.42 -2.39 -0.02 1.85 16 30 H 0.10 1.35 7.83 -2.39 -0.02 1.34 16 31 H 0.06 1.39 6.12 -2.39 -0.01 1.37 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.38 11.62 8.74 -74.05 -0.65 10.98 16 34 H 0.12 2.60 7.49 -2.91 -0.02 2.58 16 35 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.14 1.62 6.05 -2.91 -0.02 1.60 16 39 H 0.40 15.34 6.05 -92.70 -0.56 14.78 16 40 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 41 H 0.00 0.25 7.57 -2.39 -0.02 0.23 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -73.99 338.15 1.28 -72.70 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.22 Total: 28.84 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 5.54 Total: 9.75 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.44 Total: -109.73 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -1.48 Total: -48.75 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.19 kcal Total: -73.99 1.28 -72.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824523697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.616 kcal (2) G-P(sol) polarization free energy of solvation -73.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds