Wall clock time and date at job start Tue Mar 31 2020 07:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99894 * 2 1 4 4 C 1.38728 * 120.05689 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94246 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05708 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94094 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.47488 * 345.42481 * 7 6 5 9 9 N 1.46909 * 109.46714 * 225.43237 * 7 6 5 10 10 C 1.46895 * 110.99769 * 154.00753 * 9 7 6 11 11 C 1.53008 * 109.46880 * 154.51865 * 10 9 7 12 12 C 1.52998 * 109.47269 * 274.51853 * 10 9 7 13 13 C 1.50693 * 109.47277 * 105.43485 * 7 6 5 14 14 O 1.21287 * 120.00497 * 93.90841 * 13 7 6 15 15 N 1.34783 * 119.99723 * 273.91192 * 13 7 6 16 16 C 1.37099 * 119.99989 * 179.97438 * 15 13 7 17 17 H 1.08001 * 120.00073 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99914 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99825 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99702 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47327 * 59.99979 * 20 18 16 22 22 H 1.48508 * 109.46664 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47100 * 299.99189 * 20 18 16 24 24 C 1.38260 * 120.10957 * 0.26662 * 6 5 4 25 25 C 1.38149 * 120.05679 * 359.45759 * 24 6 5 26 26 H 1.08997 * 109.47097 * 299.99980 * 1 2 3 27 27 H 1.08998 * 109.47252 * 60.00326 * 1 2 3 28 28 H 1.09002 * 109.46846 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.02683 * 359.96047 * 4 3 2 30 30 H 1.07998 * 119.96642 * 180.02562 * 5 4 3 31 31 H 1.00892 * 110.99886 * 30.04664 * 9 7 6 32 32 H 1.09002 * 109.47616 * 34.52233 * 10 9 7 33 33 H 1.09002 * 109.46696 * 59.99805 * 11 10 9 34 34 H 1.09001 * 109.46618 * 179.97438 * 11 10 9 35 35 H 1.08996 * 109.47224 * 299.99878 * 11 10 9 36 36 H 1.08996 * 109.46966 * 64.76573 * 12 10 9 37 37 H 1.09001 * 109.47113 * 184.76721 * 12 10 9 38 38 H 1.09000 * 109.47163 * 304.76432 * 12 10 9 39 39 H 0.96996 * 119.99649 * 0.02562 * 15 13 7 40 40 H 0.96995 * 119.99316 * 180.02562 * 19 18 16 41 41 H 1.08001 * 119.96922 * 179.70091 * 24 6 5 42 42 H 1.08002 * 120.02531 * 180.27556 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9859 5.0186 -0.0005 8 1 5.0369 4.8910 0.2585 9 7 3.3418 5.8964 0.9858 10 6 4.2769 6.9211 1.4686 11 6 3.4909 8.1415 1.9523 12 6 5.1017 6.3543 2.6259 13 6 3.8776 5.6376 -1.3702 14 8 2.9702 6.4027 -1.6200 15 7 4.7892 5.3410 -2.3177 16 6 4.6904 5.9037 -3.5640 17 1 3.8820 6.5843 -3.7867 18 6 5.6298 5.5975 -4.5410 19 7 6.6132 4.7689 -4.2701 20 14 5.4956 6.3648 -6.2388 21 1 5.5693 7.8432 -6.1211 22 1 6.6116 5.8802 -7.0905 23 1 4.1999 5.9810 -6.8544 24 6 1.9210 3.6048 0.0050 25 6 1.2915 2.3751 -0.0002 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.0209 0.3800 0.0016 30 1 5.1344 2.5751 0.0000 31 1 2.9635 5.3616 1.7532 32 1 4.9432 7.2161 0.6579 33 1 2.8247 7.8466 2.7630 34 1 4.1849 8.9018 2.3110 35 1 2.9034 8.5454 1.1279 36 1 5.7256 5.5381 2.2618 37 1 5.7351 7.1392 3.0393 38 1 4.4321 5.9819 3.4011 39 1 5.5146 4.7289 -2.1180 40 1 7.2692 4.5555 -4.9520 41 1 1.3341 4.5114 0.0095 42 1 0.2128 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824651546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:48 Heat of formation + Delta-G solvation = -50.334252 kcal Electronic energy + Delta-G solvation = -23653.959808 eV Core-core repulsion = 20213.195280 eV Total energy + Delta-G solvation = -3440.764529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.10 seconds Orbital eigenvalues (eV) -40.11869 -38.80858 -37.06203 -36.35028 -33.80861 -32.27085 -31.09736 -30.79133 -29.15238 -27.28384 -26.94294 -25.90244 -23.94873 -22.43883 -21.42042 -20.48043 -18.94681 -18.03406 -17.77532 -16.36975 -16.15995 -15.71360 -15.49678 -14.96057 -14.52527 -14.45491 -13.91437 -13.78130 -13.57825 -13.24951 -13.20011 -12.89839 -12.78422 -12.55848 -12.18417 -12.04267 -11.97859 -11.66771 -11.45368 -11.10545 -11.06876 -10.94847 -10.73809 -10.66667 -10.51579 -10.40041 -10.15594 -9.42278 -8.78779 -8.66955 -7.97385 -7.88212 -7.66715 -6.35379 -3.75344 1.54188 1.62187 3.23669 3.28809 3.31642 3.33419 3.84588 4.07228 4.15924 4.39827 4.91810 5.02780 5.05000 5.08899 5.15547 5.17428 5.23245 5.31568 5.38000 5.40424 5.52308 5.60210 5.62838 5.76530 5.79564 5.89674 5.96375 6.05223 6.09355 6.27439 6.29886 6.39991 6.44923 6.55681 6.59395 6.85494 6.92725 7.33769 7.49646 7.60494 7.74111 8.13538 8.70032 9.25396 9.62796 10.16003 10.82444 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010063 B = 0.005726 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.720975 B = 4888.520092 C = 6802.689598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.153 4.153 5 C -0.069 4.069 6 C -0.114 4.114 7 C 0.125 3.875 8 H 0.057 0.943 9 N -0.653 5.653 10 C 0.080 3.920 11 C -0.134 4.134 12 C -0.181 4.181 13 C 0.455 3.545 14 O -0.569 6.569 15 N -0.565 5.565 16 C -0.296 4.296 17 H 0.101 0.899 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.928 3.072 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.048 4.048 25 C -0.211 4.211 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.338 0.662 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.390 0.610 40 H 0.271 0.729 41 H 0.137 0.863 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 -5.974 13.018 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.076 3.924 4 C -0.172 4.172 5 C -0.087 4.087 6 C -0.115 4.115 7 C 0.011 3.989 8 H 0.075 0.925 9 N -0.285 5.285 10 C -0.030 4.030 11 C -0.192 4.192 12 C -0.240 4.240 13 C 0.239 3.761 14 O -0.451 6.451 15 N -0.201 5.201 16 C -0.426 4.426 17 H 0.119 0.881 18 C -0.179 4.179 19 N -0.544 5.544 20 Si 0.756 3.244 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.066 4.066 25 C -0.230 4.230 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.157 0.843 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.223 0.777 40 H 0.081 0.919 41 H 0.155 0.845 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.437 -5.280 12.236 14.800 hybrid contribution 0.838 -0.517 -0.303 1.030 sum -5.600 -5.797 11.933 14.400 Atomic orbital electron populations 1.23011 0.78742 1.03519 1.01416 1.86036 1.21141 1.27301 1.89014 1.19031 0.92379 0.83942 0.97044 1.20295 0.91243 0.98370 1.07245 1.20877 0.99877 0.90947 0.97022 1.19605 0.93993 0.93639 1.04313 1.20235 0.95907 0.88863 0.93851 0.92522 1.60214 1.35793 1.16086 1.16380 1.21571 0.92953 0.92699 0.95812 1.21703 0.99845 0.96429 1.01235 1.22543 1.00745 1.01422 0.99311 1.19593 0.85081 0.85974 0.85460 1.90499 1.35136 1.38669 1.80834 1.41865 1.25495 1.41926 1.10852 1.19631 1.11424 1.24457 0.87059 0.88095 1.25221 0.95583 0.97063 1.00025 1.69604 1.14489 1.34907 1.35415 0.85957 0.77732 0.79290 0.81470 1.19956 1.21014 1.19976 1.20917 0.94080 0.97314 0.94320 1.21209 0.99802 0.92302 1.09643 0.92794 0.92617 0.88573 0.85369 0.85283 0.84266 0.90292 0.93203 0.93026 0.91524 0.92827 0.92199 0.92692 0.77707 0.91929 0.84540 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.33 10.50 -19.44 -0.20 -4.53 16 3 C 0.12 1.80 6.69 -39.22 -0.26 1.53 16 4 C -0.15 -2.27 9.99 -39.43 -0.39 -2.66 16 5 C -0.07 -1.06 9.66 -39.60 -0.38 -1.45 16 6 C -0.11 -1.94 4.65 -104.60 -0.49 -2.43 16 7 C 0.12 2.28 2.41 -70.02 -0.17 2.11 16 8 H 0.06 0.97 6.99 -51.93 -0.36 0.61 16 9 N -0.65 -10.66 5.22 -102.18 -0.53 -11.19 16 10 C 0.08 1.18 3.00 -67.71 -0.20 0.98 16 11 C -0.13 -1.81 9.52 37.16 0.35 -1.46 16 12 C -0.18 -2.15 9.16 37.16 0.34 -1.81 16 13 C 0.45 10.94 6.61 -10.99 -0.07 10.86 16 14 O -0.57 -15.70 16.21 5.55 0.09 -15.61 16 15 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 16 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 20 Si 0.93 21.43 29.55 -169.99 -5.02 16.40 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 24 C -0.05 -0.79 9.04 -39.61 -0.36 -1.15 16 25 C -0.21 -3.09 9.04 -39.43 -0.36 -3.45 16 26 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.13 1.79 8.00 -52.49 -0.42 1.37 16 31 H 0.34 4.79 7.76 -39.30 -0.31 4.48 16 32 H 0.08 1.38 7.67 -51.93 -0.40 0.98 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.58 8.04 -51.93 -0.42 0.17 16 39 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.14 2.35 7.87 -52.49 -0.41 1.94 16 42 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 LS Contribution 353.54 15.07 5.33 5.33 Total: -1.00 -32.12 353.54 -7.12 -39.24 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -6.20 Total: 14.83 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.24 Total: -5.68 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.13 Total: -49.99 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.11 Total: -20.14 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.12 -7.12 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824651546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.093 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.10 seconds