Wall clock time and date at job start Tue Mar 31 2020 07:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99894 * 2 1 4 4 C 1.38728 * 120.05689 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94246 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05708 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94094 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.47488 * 345.42481 * 7 6 5 9 9 N 1.46909 * 109.46714 * 225.43237 * 7 6 5 10 10 C 1.46895 * 110.99769 * 154.00753 * 9 7 6 11 11 C 1.53008 * 109.46880 * 154.51865 * 10 9 7 12 12 C 1.52998 * 109.47269 * 274.51853 * 10 9 7 13 13 C 1.50693 * 109.47277 * 105.43485 * 7 6 5 14 14 O 1.21287 * 120.00497 * 93.90841 * 13 7 6 15 15 N 1.34783 * 119.99723 * 273.91192 * 13 7 6 16 16 C 1.37099 * 119.99989 * 179.97438 * 15 13 7 17 17 H 1.08001 * 120.00073 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99914 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99825 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99702 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47327 * 59.99979 * 20 18 16 22 22 H 1.48508 * 109.46664 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47100 * 299.99189 * 20 18 16 24 24 C 1.38260 * 120.10957 * 0.26662 * 6 5 4 25 25 C 1.38149 * 120.05679 * 359.45759 * 24 6 5 26 26 H 1.08997 * 109.47097 * 299.99980 * 1 2 3 27 27 H 1.08998 * 109.47252 * 60.00326 * 1 2 3 28 28 H 1.09002 * 109.46846 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.02683 * 359.96047 * 4 3 2 30 30 H 1.07998 * 119.96642 * 180.02562 * 5 4 3 31 31 H 1.00892 * 110.99886 * 30.04664 * 9 7 6 32 32 H 1.09002 * 109.47616 * 34.52233 * 10 9 7 33 33 H 1.09002 * 109.46696 * 59.99805 * 11 10 9 34 34 H 1.09001 * 109.46618 * 179.97438 * 11 10 9 35 35 H 1.08996 * 109.47224 * 299.99878 * 11 10 9 36 36 H 1.08996 * 109.46966 * 64.76573 * 12 10 9 37 37 H 1.09001 * 109.47113 * 184.76721 * 12 10 9 38 38 H 1.09000 * 109.47163 * 304.76432 * 12 10 9 39 39 H 0.96996 * 119.99649 * 0.02562 * 15 13 7 40 40 H 0.96995 * 119.99316 * 180.02562 * 19 18 16 41 41 H 1.08001 * 119.96922 * 179.70091 * 24 6 5 42 42 H 1.08002 * 120.02531 * 180.27556 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9859 5.0186 -0.0005 8 1 5.0369 4.8910 0.2585 9 7 3.3418 5.8964 0.9858 10 6 4.2769 6.9211 1.4686 11 6 3.4909 8.1415 1.9523 12 6 5.1017 6.3543 2.6259 13 6 3.8776 5.6376 -1.3702 14 8 2.9702 6.4027 -1.6200 15 7 4.7892 5.3410 -2.3177 16 6 4.6904 5.9037 -3.5640 17 1 3.8820 6.5843 -3.7867 18 6 5.6298 5.5975 -4.5410 19 7 6.6132 4.7689 -4.2701 20 14 5.4956 6.3648 -6.2388 21 1 5.5693 7.8432 -6.1211 22 1 6.6116 5.8802 -7.0905 23 1 4.1999 5.9810 -6.8544 24 6 1.9210 3.6048 0.0050 25 6 1.2915 2.3751 -0.0002 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.0209 0.3800 0.0016 30 1 5.1344 2.5751 0.0000 31 1 2.9635 5.3616 1.7532 32 1 4.9432 7.2161 0.6579 33 1 2.8247 7.8466 2.7630 34 1 4.1849 8.9018 2.3110 35 1 2.9034 8.5454 1.1279 36 1 5.7256 5.5381 2.2618 37 1 5.7351 7.1392 3.0393 38 1 4.4321 5.9819 3.4011 39 1 5.5146 4.7289 -2.1180 40 1 7.2692 4.5555 -4.9520 41 1 1.3341 4.5114 0.0095 42 1 0.2128 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824651546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:43 Heat of formation + Delta-G solvation = -72.471238 kcal Electronic energy + Delta-G solvation = -23654.919740 eV Core-core repulsion = 20213.195280 eV Total energy + Delta-G solvation = -3441.724460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.33998 -40.30853 -38.52822 -37.61206 -35.87033 -33.65957 -33.02892 -32.02206 -30.28963 -28.26092 -27.96457 -27.62476 -25.63216 -23.61952 -22.77783 -21.65123 -20.76274 -19.82423 -19.10432 -17.93362 -17.33964 -16.99469 -16.66398 -16.57829 -16.12293 -15.70431 -15.53913 -15.16784 -14.85435 -14.60658 -14.57329 -14.24736 -14.20419 -13.75075 -13.50901 -13.42993 -13.06142 -12.98365 -12.89295 -12.69998 -12.42201 -12.25716 -12.12555 -12.12083 -11.91235 -11.78982 -11.67403 -11.46968 -10.46351 -9.97737 -9.95451 -9.24709 -9.06964 -8.43820 -5.92364 0.34116 0.40441 1.39517 1.40289 1.51352 2.08592 2.29463 2.37426 2.74031 2.92697 3.21539 3.57189 3.81941 3.91277 3.93549 4.02947 4.15657 4.30367 4.34559 4.40429 4.42996 4.47144 4.47391 4.58243 4.71845 4.74389 4.79377 4.92038 4.94980 5.04918 5.10880 5.24370 5.26710 5.36625 5.41811 5.44811 5.62355 5.75738 5.92981 6.12613 6.43439 6.57161 6.64153 7.15939 7.60221 8.17240 8.73224 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010063 B = 0.005726 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.720975 B = 4888.520092 C = 6802.689598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.122 3.878 4 C -0.159 4.159 5 C -0.071 4.071 6 C -0.133 4.133 7 C 0.143 3.857 8 H 0.068 0.932 9 N -0.663 5.663 10 C 0.075 3.925 11 C -0.128 4.128 12 C -0.170 4.170 13 C 0.453 3.547 14 O -0.611 6.611 15 N -0.574 5.574 16 C -0.331 4.331 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.920 5.920 20 Si 0.990 3.010 21 H -0.272 1.272 22 H -0.269 1.269 23 H -0.274 1.274 24 C -0.060 4.060 25 C -0.210 4.210 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.353 0.647 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.393 0.607 40 H 0.277 0.723 41 H 0.123 0.877 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 -7.269 13.949 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.076 3.924 4 C -0.177 4.177 5 C -0.089 4.089 6 C -0.134 4.134 7 C 0.029 3.971 8 H 0.086 0.914 9 N -0.296 5.296 10 C -0.034 4.034 11 C -0.186 4.186 12 C -0.229 4.229 13 C 0.240 3.760 14 O -0.496 6.496 15 N -0.211 5.211 16 C -0.461 4.461 17 H 0.094 0.906 18 C -0.211 4.211 19 N -0.561 5.561 20 Si 0.813 3.187 21 H -0.197 1.197 22 H -0.193 1.193 23 H -0.199 1.199 24 C -0.078 4.078 25 C -0.228 4.228 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.141 0.859 29 H 0.165 0.835 30 H 0.160 0.840 31 H 0.174 0.826 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.226 0.774 40 H 0.086 0.914 41 H 0.141 0.859 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.519 -6.597 13.199 16.132 hybrid contribution 0.770 -0.171 -0.551 0.962 sum -5.749 -6.768 12.648 15.454 Atomic orbital electron populations 1.23349 0.76551 1.05635 1.02150 1.86036 1.23412 1.26434 1.88612 1.19175 0.92628 0.84527 0.96027 1.20562 0.91745 0.98728 1.06674 1.21039 1.00582 0.90735 0.96589 1.19545 0.94332 0.93200 1.06361 1.19910 0.97031 0.89404 0.90734 0.91425 1.60091 1.36450 1.16246 1.16862 1.21618 0.92832 0.93021 0.95974 1.21656 1.00091 0.96234 1.00630 1.22419 1.00656 1.01625 0.98219 1.20648 0.83509 0.84717 0.87161 1.90458 1.36560 1.40382 1.82168 1.41925 1.26118 1.42260 1.10775 1.19591 1.11889 1.25691 0.88922 0.90575 1.25987 0.94815 0.97144 1.03171 1.69668 1.14666 1.35143 1.36627 0.85043 0.78046 0.78481 0.77089 1.19683 1.19347 1.19885 1.20884 0.93971 0.97667 0.95287 1.21395 1.01070 0.91518 1.08852 0.91419 0.92471 0.85919 0.83547 0.83984 0.82598 0.93755 0.91282 0.91072 0.94579 0.93103 0.90731 0.90883 0.77408 0.91364 0.85935 0.83406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.16 10.50 -92.46 -0.97 -9.13 16 3 C 0.12 3.41 6.69 22.51 0.15 3.56 16 4 C -0.16 -4.46 9.99 22.37 0.22 -4.24 16 5 C -0.07 -2.14 9.66 22.25 0.21 -1.92 16 6 C -0.13 -4.52 4.65 -19.85 -0.09 -4.61 16 7 C 0.14 5.30 2.41 43.42 0.10 5.40 16 8 H 0.07 2.34 6.99 -2.39 -0.02 2.32 16 9 N -0.66 -21.82 5.22 -477.18 -2.49 -24.31 16 10 C 0.08 2.23 3.00 44.92 0.13 2.37 16 11 C -0.13 -3.41 9.52 71.98 0.69 -2.72 16 12 C -0.17 -3.73 9.16 71.98 0.66 -3.07 16 13 C 0.45 22.67 6.61 87.65 0.58 23.25 16 14 O -0.61 -35.35 16.21 -3.05 -0.05 -35.40 16 15 N -0.57 -30.74 5.29 -306.98 -1.62 -32.36 16 16 C -0.33 -19.43 9.68 84.04 0.81 -18.61 16 17 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 18 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 19 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 20 Si 0.99 44.05 29.55 68.60 2.03 46.07 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 C -0.06 -1.96 9.04 22.25 0.20 -1.76 16 25 C -0.21 -5.89 9.04 22.37 0.20 -5.69 16 26 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 27 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 28 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 30 H 0.14 3.80 8.00 -2.91 -0.02 3.77 16 31 H 0.35 9.76 7.76 -89.70 -0.70 9.06 16 32 H 0.04 1.61 7.67 -2.39 -0.02 1.59 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.14 7.54 -2.39 -0.02 1.12 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.35 8.04 -2.39 -0.02 1.33 16 39 H 0.39 20.18 7.90 -92.71 -0.73 19.44 16 40 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.12 4.33 7.87 -2.91 -0.02 4.31 16 42 H 0.15 3.33 6.30 -2.91 -0.02 3.31 16 Total: -1.00 -70.99 353.54 2.24 -68.75 By element: Atomic # 1 Polarization: 44.02 SS G_CDS: -0.39 Total: 43.63 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.46 Total: -6.82 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -3.83 Total: -107.11 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.02 Total: -44.53 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.99 2.24 -68.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824651546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.721 kcal (2) G-P(sol) polarization free energy of solvation -70.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds