Wall clock time and date at job start Tue Mar 31 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 H 1.09003 * 109.46859 * 55.00452 * 3 2 1 5 5 C 1.53004 * 109.47139 * 174.99822 * 3 2 1 6 6 O 1.42898 * 109.47529 * 295.00266 * 3 2 1 7 7 C 1.35666 * 117.00414 * 149.99717 * 6 3 2 8 8 C 1.38827 * 119.64436 * 179.97438 * 7 6 3 9 9 C 1.38546 * 119.25506 * 180.02562 * 8 7 6 10 10 C 1.38553 * 118.56073 * 0.27783 * 9 8 7 11 11 C 1.38876 * 119.22885 * 359.43154 * 10 9 8 12 12 N 1.39404 * 119.66640 * 180.29728 * 11 10 9 13 13 C 1.34774 * 119.99907 * 174.90201 * 12 11 10 14 14 O 1.21269 * 120.00359 * 5.09832 * 13 12 11 15 15 C 1.50704 * 119.99693 * 185.09449 * 13 12 11 16 16 C 1.52999 * 109.47126 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46798 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00486 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99678 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99916 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99770 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46748 * 90.00514 * 21 19 17 23 23 H 1.48503 * 109.47023 * 209.99863 * 21 19 17 24 24 H 1.48493 * 109.47499 * 330.00405 * 21 19 17 25 25 N 1.32295 * 119.64233 * 359.97438 * 7 6 3 26 26 H 1.09004 * 109.46871 * 299.99771 * 1 2 3 27 27 H 1.09003 * 109.47122 * 59.99301 * 1 2 3 28 28 H 1.08996 * 109.47621 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46871 * 240.00229 * 2 1 3 30 30 H 1.09002 * 109.46598 * 120.00711 * 2 1 3 31 31 H 1.08999 * 109.46835 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.46927 * 300.00585 * 5 3 2 33 33 H 1.09000 * 109.46967 * 60.00075 * 5 3 2 34 34 H 1.07998 * 120.37258 * 0.02595 * 8 7 6 35 35 H 1.08001 * 120.71922 * 180.02562 * 9 8 7 36 36 H 1.08003 * 120.38772 * 179.70307 * 10 9 8 37 37 H 0.96995 * 119.99318 * 354.89983 * 12 11 10 38 38 H 1.09005 * 109.47115 * 300.00003 * 15 13 12 39 39 H 1.09000 * 109.47067 * 59.99888 * 15 13 12 40 40 H 1.09005 * 109.46876 * 299.99843 * 16 15 13 41 41 H 1.08997 * 109.47000 * 59.99729 * 16 15 13 42 42 H 0.96996 * 120.00232 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5649 1.4442 0.1258 6 8 1.6620 2.0814 -1.2210 7 6 1.4507 3.4207 -1.1755 8 6 1.0818 4.0973 -2.3303 9 6 0.8685 5.4651 -2.2749 10 6 1.0380 6.1133 -1.0621 11 6 1.4024 5.3750 0.0563 12 7 1.5693 6.0169 1.2825 13 6 1.8217 5.2950 2.3922 14 8 1.9954 4.0976 2.3102 15 6 1.8881 5.9758 3.7350 16 6 2.1865 4.9379 4.8188 17 6 2.2523 5.6187 6.1617 18 1 2.0973 6.6850 6.2348 19 6 2.5104 4.8801 7.2971 20 7 2.6996 3.5817 7.2080 21 14 2.5927 5.7240 8.9615 22 1 1.2414 5.7365 9.5774 23 1 3.5322 4.9869 9.8443 24 1 3.0696 7.1193 8.7861 25 7 1.5984 4.0680 -0.0312 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5140 0.8900 31 1 3.9282 2.4719 0.1262 32 1 3.8532 0.9568 1.0571 33 1 3.9995 0.9051 -0.7160 34 1 0.9624 3.5633 -3.2615 35 1 0.5805 6.0148 -3.1587 36 1 0.8842 7.1796 -0.9864 37 1 1.5038 6.9831 1.3368 38 1 2.6789 6.7259 3.7233 39 1 0.9334 6.4576 3.9458 40 1 1.3960 4.1875 4.8306 41 1 3.1413 4.4565 4.6078 42 1 2.8808 3.0620 8.0067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830637683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:46 Heat of formation + Delta-G solvation = -46.738020 kcal Electronic energy + Delta-G solvation = -23393.204548 eV Core-core repulsion = 19952.595964 eV Total energy + Delta-G solvation = -3440.608584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.84063 -39.31561 -37.97373 -34.74891 -33.80452 -33.50227 -32.18600 -31.04156 -29.97355 -29.13525 -25.94094 -24.29703 -23.49720 -22.97540 -21.68440 -20.82664 -19.58265 -18.61047 -17.11170 -16.67701 -16.03074 -15.88660 -15.69418 -15.32168 -14.99248 -14.46463 -14.29050 -13.99076 -13.74080 -13.45936 -13.17047 -12.98348 -12.81059 -12.25516 -12.22900 -12.13949 -11.77196 -11.67501 -11.22835 -11.04767 -10.96641 -10.76811 -10.63201 -10.50141 -10.27982 -10.01087 -9.85774 -9.62781 -9.35798 -9.15362 -8.76269 -8.35601 -7.94335 -5.99330 -4.03914 1.22633 1.36849 3.00150 3.15513 3.24266 3.31403 3.37881 3.40237 3.97834 4.40870 4.48551 4.85165 4.93344 5.01757 5.08988 5.17000 5.24436 5.34480 5.35941 5.47987 5.58908 5.66372 5.70714 5.85859 5.91147 6.00388 6.06962 6.13422 6.14455 6.18028 6.18682 6.30633 6.31702 6.39924 6.78450 6.79934 7.27801 7.54407 7.70155 7.80404 8.02302 8.14201 8.34346 8.67867 9.04093 9.59884 11.11540 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016343 B = 0.003924 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.826030 B = 7134.221341 C = 8457.386916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.081 3.919 4 H 0.107 0.893 5 C -0.161 4.161 6 O -0.301 6.301 7 C 0.357 3.643 8 C -0.238 4.238 9 C -0.015 4.015 10 C -0.259 4.259 11 C 0.411 3.589 12 N -0.670 5.670 13 C 0.497 3.503 14 O -0.464 6.464 15 C -0.128 4.128 16 C 0.038 3.962 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 N -0.530 5.530 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.416 0.584 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 1.734 -19.788 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.025 3.975 4 H 0.125 0.875 5 C -0.218 4.218 6 O -0.208 6.208 7 C 0.176 3.824 8 C -0.260 4.260 9 C -0.041 4.041 10 C -0.283 4.283 11 C 0.179 3.821 12 N -0.317 5.317 13 C 0.285 3.715 14 O -0.331 6.331 15 C -0.168 4.168 16 C 0.000 4.000 17 C -0.567 4.567 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.527 5.527 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 N -0.260 5.260 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.252 0.748 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.202 0.004 -19.050 19.317 hybrid contribution -0.134 1.463 0.456 1.538 sum -3.336 1.467 -18.594 18.948 Atomic orbital electron populations 1.21745 0.95433 1.01456 1.02302 1.21673 0.96654 0.94578 1.02792 1.22531 0.95505 0.92871 0.86570 0.87542 1.22113 0.94986 1.02787 1.01943 1.86243 1.81992 1.15963 1.36644 1.19633 0.89221 0.84772 0.88758 1.20871 1.12234 0.94758 0.98176 1.21057 0.92901 0.93024 0.97108 1.21264 1.13043 1.01134 0.92865 1.18176 0.90299 0.87624 0.86010 1.44225 1.70769 1.11102 1.05622 1.21926 0.75488 0.88321 0.85770 1.90729 1.42223 1.14527 1.85670 1.21928 1.02796 1.01607 0.90479 1.18905 0.98193 0.92700 0.90171 1.21195 1.49317 0.94268 0.91887 0.92576 1.25014 0.95269 0.94812 0.99188 1.69990 1.48117 1.05583 1.29031 0.86592 0.77878 0.79514 0.83971 1.20659 1.21207 1.19870 1.67173 1.23479 1.09039 1.26310 0.92497 0.92509 0.92710 0.91446 0.89939 0.92063 0.90964 0.92823 0.84616 0.84253 0.84736 0.74769 0.89984 0.89930 0.95767 0.95730 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.81 37.16 0.36 -1.49 16 2 C -0.12 -1.50 5.64 -26.73 -0.15 -1.65 16 3 C 0.08 1.24 2.49 -26.73 -0.07 1.18 16 4 H 0.11 2.00 6.50 -51.93 -0.34 1.66 16 5 C -0.16 -2.38 9.53 37.16 0.35 -2.03 16 6 O -0.30 -4.59 9.30 -18.70 -0.17 -4.77 16 7 C 0.36 5.50 7.45 -17.13 -0.13 5.37 16 8 C -0.24 -2.87 10.04 -39.25 -0.39 -3.27 16 9 C -0.02 -0.15 10.16 -39.35 -0.40 -0.55 16 10 C -0.26 -2.88 9.93 -39.23 -0.39 -3.27 16 11 C 0.41 6.15 7.42 -154.68 -1.15 5.00 16 12 N -0.67 -9.64 5.39 -11.44 -0.06 -9.70 16 13 C 0.50 9.41 7.79 -10.98 -0.09 9.33 16 14 O -0.46 -10.63 13.77 5.57 0.08 -10.56 16 15 C -0.13 -2.49 5.64 -27.88 -0.16 -2.65 16 16 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 17 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 21 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 N -0.53 -9.19 6.17 -12.44 -0.08 -9.27 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.42 4.18 8.70 -40.82 -0.36 3.83 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -34.14 356.21 -8.44 -42.57 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.55 Total: 2.85 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.73 Total: -6.59 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.60 Total: -45.27 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.10 Total: -15.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.14 -8.44 -42.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830637683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.167 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds