Wall clock time and date at job start Tue Mar 31 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 H 1.09003 * 109.46859 * 55.00452 * 3 2 1 5 5 C 1.53004 * 109.47139 * 174.99822 * 3 2 1 6 6 O 1.42898 * 109.47529 * 295.00266 * 3 2 1 7 7 C 1.35666 * 117.00414 * 149.99717 * 6 3 2 8 8 C 1.38827 * 119.64436 * 179.97438 * 7 6 3 9 9 C 1.38546 * 119.25506 * 180.02562 * 8 7 6 10 10 C 1.38553 * 118.56073 * 0.27783 * 9 8 7 11 11 C 1.38876 * 119.22885 * 359.43154 * 10 9 8 12 12 N 1.39404 * 119.66640 * 180.29728 * 11 10 9 13 13 C 1.34774 * 119.99907 * 174.90201 * 12 11 10 14 14 O 1.21269 * 120.00359 * 5.09832 * 13 12 11 15 15 C 1.50704 * 119.99693 * 185.09449 * 13 12 11 16 16 C 1.52999 * 109.47126 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46798 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00486 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99678 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99916 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99770 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46748 * 90.00514 * 21 19 17 23 23 H 1.48503 * 109.47023 * 209.99863 * 21 19 17 24 24 H 1.48493 * 109.47499 * 330.00405 * 21 19 17 25 25 N 1.32295 * 119.64233 * 359.97438 * 7 6 3 26 26 H 1.09004 * 109.46871 * 299.99771 * 1 2 3 27 27 H 1.09003 * 109.47122 * 59.99301 * 1 2 3 28 28 H 1.08996 * 109.47621 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46871 * 240.00229 * 2 1 3 30 30 H 1.09002 * 109.46598 * 120.00711 * 2 1 3 31 31 H 1.08999 * 109.46835 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.46927 * 300.00585 * 5 3 2 33 33 H 1.09000 * 109.46967 * 60.00075 * 5 3 2 34 34 H 1.07998 * 120.37258 * 0.02595 * 8 7 6 35 35 H 1.08001 * 120.71922 * 180.02562 * 9 8 7 36 36 H 1.08003 * 120.38772 * 179.70307 * 10 9 8 37 37 H 0.96995 * 119.99318 * 354.89983 * 12 11 10 38 38 H 1.09005 * 109.47115 * 300.00003 * 15 13 12 39 39 H 1.09000 * 109.47067 * 59.99888 * 15 13 12 40 40 H 1.09005 * 109.46876 * 299.99843 * 16 15 13 41 41 H 1.08997 * 109.47000 * 59.99729 * 16 15 13 42 42 H 0.96996 * 120.00232 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5649 1.4442 0.1258 6 8 1.6620 2.0814 -1.2210 7 6 1.4507 3.4207 -1.1755 8 6 1.0818 4.0973 -2.3303 9 6 0.8685 5.4651 -2.2749 10 6 1.0380 6.1133 -1.0621 11 6 1.4024 5.3750 0.0563 12 7 1.5693 6.0169 1.2825 13 6 1.8217 5.2950 2.3922 14 8 1.9954 4.0976 2.3102 15 6 1.8881 5.9758 3.7350 16 6 2.1865 4.9379 4.8188 17 6 2.2523 5.6187 6.1617 18 1 2.0973 6.6850 6.2348 19 6 2.5104 4.8801 7.2971 20 7 2.6996 3.5817 7.2080 21 14 2.5927 5.7240 8.9615 22 1 1.2414 5.7365 9.5774 23 1 3.5322 4.9869 9.8443 24 1 3.0696 7.1193 8.7861 25 7 1.5984 4.0680 -0.0312 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5140 0.8900 31 1 3.9282 2.4719 0.1262 32 1 3.8532 0.9568 1.0571 33 1 3.9995 0.9051 -0.7160 34 1 0.9624 3.5633 -3.2615 35 1 0.5805 6.0148 -3.1587 36 1 0.8842 7.1796 -0.9864 37 1 1.5038 6.9831 1.3368 38 1 2.6789 6.7259 3.7233 39 1 0.9334 6.4576 3.9458 40 1 1.3960 4.1875 4.8306 41 1 3.1413 4.4565 4.6078 42 1 2.8808 3.0620 8.0067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830637683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:46 Heat of formation + Delta-G solvation = -69.317968 kcal Electronic energy + Delta-G solvation = -23394.183688 eV Core-core repulsion = 19952.595964 eV Total energy + Delta-G solvation = -3441.587724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.95410 -40.62659 -39.16175 -36.01942 -35.53991 -34.91370 -33.35052 -32.84231 -31.10914 -30.30052 -27.81721 -25.48372 -24.77817 -24.06140 -23.29082 -22.06817 -20.95888 -19.77269 -18.82853 -18.07764 -17.43048 -16.92257 -16.86360 -16.64615 -16.41534 -16.37291 -15.41094 -15.09655 -14.98619 -14.96498 -14.31406 -14.23096 -14.17760 -13.93186 -13.60668 -13.26637 -13.06160 -12.98714 -12.81809 -12.74263 -12.48549 -12.10397 -11.96483 -11.91200 -11.68108 -11.62726 -11.33953 -11.30071 -11.11838 -10.57766 -10.49137 -10.05324 -8.99080 -8.18624 -6.32643 0.17276 0.44789 1.41839 1.44383 1.55234 1.74824 1.89838 2.12966 2.42683 2.93248 3.14762 3.33777 3.74090 3.96375 3.99092 4.09795 4.12678 4.18302 4.36637 4.39927 4.43945 4.51932 4.53287 4.59618 4.60137 4.80552 4.93339 4.97123 5.00036 5.05453 5.10683 5.14313 5.27459 5.29128 5.33265 5.48982 5.61361 5.70063 5.84196 6.15340 6.16324 6.40986 6.85625 7.00750 7.37602 7.39654 8.93958 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016343 B = 0.003924 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.826030 B = 7134.221341 C = 8457.386916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.085 3.915 4 H 0.063 0.937 5 C -0.153 4.153 6 O -0.305 6.305 7 C 0.318 3.682 8 C -0.229 4.229 9 C -0.006 4.006 10 C -0.235 4.235 11 C 0.370 3.630 12 N -0.651 5.651 13 C 0.499 3.501 14 O -0.518 6.518 15 C -0.115 4.115 16 C 0.045 3.955 17 C -0.543 4.543 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.973 3.027 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.254 1.254 25 N -0.572 5.572 26 H 0.033 0.967 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.159 0.841 35 H 0.190 0.810 36 H 0.176 0.824 37 H 0.437 0.563 38 H 0.109 0.891 39 H 0.108 0.892 40 H -0.019 1.019 41 H -0.018 1.018 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 4.504 -21.650 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.028 3.972 4 H 0.081 0.919 5 C -0.211 4.211 6 O -0.213 6.213 7 C 0.139 3.861 8 C -0.251 4.251 9 C -0.031 4.031 10 C -0.258 4.258 11 C 0.140 3.860 12 N -0.300 5.300 13 C 0.287 3.713 14 O -0.389 6.389 15 C -0.155 4.155 16 C 0.007 3.993 17 C -0.581 4.581 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.198 1.198 23 H -0.213 1.213 24 H -0.178 1.178 25 N -0.302 5.302 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.177 0.823 35 H 0.207 0.793 36 H 0.193 0.807 37 H 0.278 0.722 38 H 0.127 0.873 39 H 0.126 0.874 40 H -0.001 1.001 41 H 0.000 1.000 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.058 2.850 -20.960 21.539 hybrid contribution 0.098 0.639 0.895 1.104 sum -3.960 3.489 -20.065 20.748 Atomic orbital electron populations 1.21702 0.95158 1.02533 1.01045 1.21678 0.96885 0.92841 1.03885 1.22370 0.95303 0.93898 0.85591 0.91924 1.22036 0.95136 1.01228 1.02655 1.86205 1.82552 1.16556 1.36012 1.20095 0.91535 0.84846 0.89630 1.21311 1.10196 0.95903 0.97649 1.21668 0.90995 0.92165 0.98304 1.21725 1.09779 1.02816 0.91503 1.18606 0.92793 0.87598 0.86992 1.43745 1.69855 1.11844 1.04596 1.21733 0.75078 0.87705 0.86820 1.90735 1.44936 1.16719 1.86521 1.21669 1.04979 0.99878 0.88934 1.18664 0.94471 0.93396 0.92782 1.21706 1.48565 0.95333 0.92452 0.90454 1.26121 0.94691 0.95397 1.04122 1.70178 1.49491 1.07707 1.30336 0.85337 0.78088 0.78928 0.77991 1.19757 1.21296 1.17796 1.66990 1.24322 1.10850 1.28027 0.94797 0.92683 0.90359 0.89343 0.89671 0.94819 0.91475 0.90440 0.82319 0.79286 0.80668 0.72194 0.87295 0.87356 1.00096 0.99981 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.81 71.98 0.71 -3.00 16 2 C -0.12 -3.00 5.64 30.59 0.17 -2.83 16 3 C 0.08 2.80 2.49 30.59 0.08 2.88 16 4 H 0.06 2.64 6.50 -2.39 -0.02 2.62 16 5 C -0.15 -4.89 9.53 71.98 0.69 -4.20 16 6 O -0.31 -9.65 9.30 -89.83 -0.83 -10.48 16 7 C 0.32 9.97 7.45 84.76 0.63 10.60 16 8 C -0.23 -5.00 10.04 22.48 0.23 -4.77 16 9 C -0.01 -0.10 10.16 22.42 0.23 0.13 16 10 C -0.24 -4.37 9.93 22.50 0.22 -4.15 16 11 C 0.37 10.86 7.42 132.85 0.99 11.84 16 12 N -0.65 -18.34 5.39 -308.52 -1.66 -20.00 16 13 C 0.50 19.61 7.79 87.66 0.68 20.29 16 14 O -0.52 -25.79 13.77 -3.00 -0.04 -25.83 16 15 C -0.11 -4.51 5.64 29.85 0.17 -4.34 16 16 C 0.04 2.47 4.26 29.85 0.13 2.59 16 17 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 18 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 19 C -0.01 -0.34 5.46 84.66 0.46 0.13 16 20 N -0.94 -59.54 13.29 21.45 0.28 -59.25 16 21 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 25 N -0.57 -20.68 6.17 -306.12 -1.89 -22.57 16 26 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.38 7.82 -2.39 -0.02 1.36 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 34 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.44 7.77 8.70 -92.71 -0.81 6.96 16 38 H 0.11 3.68 8.14 -2.38 -0.02 3.66 16 39 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 40 H -0.02 -1.23 8.10 -2.38 -0.02 -1.24 16 41 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 42 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -82.32 356.21 3.70 -78.62 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.20 Total: 18.59 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.61 Total: -5.27 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -3.27 Total: -101.82 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.88 Total: -36.31 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -82.32 3.70 -78.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830637683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.304 kcal (2) G-P(sol) polarization free energy of solvation -82.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds