Wall clock time and date at job start Tue Mar 31 2020 06:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47378 * 2 1 4 4 H 1.09005 * 109.46863 * 55.00220 * 3 2 1 5 5 C 1.50697 * 109.47078 * 174.99478 * 3 2 1 6 6 H 1.08008 * 119.99988 * 120.00409 * 5 3 2 7 7 C 1.37879 * 120.00331 * 300.00276 * 5 3 2 8 8 N 1.31516 * 119.99980 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99903 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47301 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46896 * 119.99807 * 9 7 5 12 12 H 1.48493 * 109.47272 * 239.99780 * 9 7 5 13 13 O 1.45193 * 109.47195 * 295.00009 * 3 2 1 14 14 C 1.34729 * 117.00319 * 89.99883 * 13 3 2 15 15 O 1.21491 * 119.99993 * 0.02562 * 14 13 3 16 16 C 1.47586 * 120.00246 * 179.97438 * 14 13 3 17 17 N 1.32252 * 126.68222 * 359.97438 * 16 14 13 18 18 N 1.28844 * 110.14006 * 180.02562 * 17 16 14 19 19 C 1.46500 * 124.97289 * 179.97438 * 18 17 16 20 20 C 1.34328 * 110.05297 * 359.92263 * 18 17 16 21 21 C 1.35571 * 107.22561 * 0.13383 * 20 18 17 22 22 C 1.50376 * 124.62381 * 179.74686 * 21 20 18 23 23 C 1.53483 * 108.26414 * 343.74978 * 22 21 20 24 24 C 1.53110 * 109.50451 * 49.53161 * 23 22 21 25 25 C 1.50710 * 128.89914 * 180.15907 * 20 18 17 26 26 H 1.08994 * 109.47564 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47193 * 300.00677 * 1 2 3 28 28 H 1.09006 * 109.46371 * 59.99935 * 1 2 3 29 29 H 1.09000 * 109.47297 * 240.00267 * 2 1 3 30 30 H 1.09000 * 109.47030 * 119.99939 * 2 1 3 31 31 H 0.96996 * 119.99451 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46907 * 269.97443 * 19 18 17 33 33 H 1.08999 * 109.47155 * 29.97722 * 19 18 17 34 34 H 1.09004 * 109.46903 * 149.97041 * 19 18 17 35 35 H 1.09003 * 109.69647 * 103.46259 * 22 21 20 36 36 H 1.08997 * 109.70442 * 224.02500 * 22 21 20 37 37 H 1.08997 * 109.49755 * 289.50806 * 23 22 21 38 38 H 1.09008 * 109.44406 * 169.52397 * 23 22 21 39 39 H 1.09002 * 109.44465 * 169.86463 * 24 23 22 40 40 H 1.09003 * 109.43847 * 49.93587 * 24 23 22 41 41 H 1.09006 * 109.69216 * 43.63633 * 25 20 18 42 42 H 1.08997 * 109.68917 * 283.06382 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1240 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3364 2.1730 9 14 6.0050 0.8798 1.3813 10 1 6.5988 1.5451 0.1938 11 1 6.3999 1.6155 2.6094 12 1 6.4961 -0.5192 1.4629 13 8 1.6560 2.0916 -1.2406 14 6 0.4684 2.7278 -1.2560 15 8 -0.2270 2.7402 -0.2599 16 6 0.0128 3.4106 -2.4826 17 7 0.6596 3.4815 -3.6340 18 7 -0.0295 4.1553 -4.4891 19 6 0.3824 4.4332 -5.8673 20 6 -1.1814 4.5646 -3.9324 21 6 -1.1924 4.1127 -2.6542 22 6 -2.3047 4.3552 -1.6718 23 6 -3.1781 5.4984 -2.2066 24 6 -3.5429 5.2225 -3.6678 25 6 -2.2950 5.3727 -4.5473 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0613 2.9499 32 1 0.9432 5.3673 -5.8975 33 1 1.0113 3.6199 -6.2295 34 1 -0.5009 4.5189 -6.5002 35 1 -2.9053 3.4517 -1.5665 36 1 -1.8865 4.6332 -0.7044 37 1 -2.6287 6.4374 -2.1405 38 1 -4.0890 5.5679 -1.6118 39 1 -4.3032 5.9329 -3.9923 40 1 -3.9314 4.2081 -3.7594 41 1 -2.5063 5.0031 -5.5507 42 1 -2.0039 6.4220 -4.5956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835340190.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:21 Heat of formation + Delta-G solvation = -27.036345 kcal Electronic energy + Delta-G solvation = -23978.687750 eV Core-core repulsion = 20538.933494 eV Total energy + Delta-G solvation = -3439.754255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.72031 -39.19216 -37.02102 -35.63854 -33.74839 -33.32821 -31.25760 -30.39279 -29.82941 -27.78071 -26.88822 -24.01543 -23.43719 -22.59074 -21.93706 -20.21628 -19.35759 -18.85393 -17.16173 -16.55784 -16.47513 -16.21128 -15.25574 -15.02011 -14.76889 -14.39919 -13.92488 -13.76295 -13.59196 -13.19482 -13.03347 -12.86654 -12.71285 -12.60408 -12.10016 -11.90900 -11.37891 -11.25593 -11.09214 -11.04174 -10.91773 -10.89531 -10.72659 -10.57074 -10.46167 -10.19792 -9.72946 -9.59298 -9.27389 -8.96463 -8.69897 -8.48594 -8.37293 -6.11072 -4.16927 1.81143 2.18627 2.48119 3.28682 3.35204 3.40919 3.75384 3.84016 4.32628 4.40018 4.43356 4.69257 4.70673 4.91165 5.05168 5.12199 5.16556 5.21025 5.26105 5.34372 5.45095 5.49322 5.70879 5.86176 5.87812 6.03058 6.11915 6.27742 6.32273 6.35170 6.39881 6.52265 6.65101 6.87075 6.97759 7.05926 7.26457 7.33786 7.70026 7.82664 7.97778 8.09310 8.24884 8.75867 9.01160 9.47775 10.95957 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023202 B = 0.004103 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.509307 B = 6823.011942 C = 7476.714929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.048 0.952 5 C -0.517 4.517 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.340 6.340 14 C 0.542 3.458 15 O -0.506 6.506 16 C 0.016 3.984 17 N -0.239 5.239 18 N -0.280 5.280 19 C 0.088 3.912 20 C -0.003 4.003 21 C -0.143 4.143 22 C -0.043 4.043 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.042 4.042 26 H 0.032 0.968 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.109 0.891 31 H 0.265 0.735 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.754 10.040 -15.059 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.555 4.555 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.255 6.255 14 C 0.384 3.616 15 O -0.394 6.394 16 C -0.142 4.142 17 N -0.075 5.075 18 N -0.067 5.067 19 C -0.053 4.053 20 C -0.128 4.128 21 C -0.153 4.153 22 C -0.081 4.081 23 C -0.158 4.158 24 C -0.152 4.152 25 C -0.081 4.081 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.843 9.589 -15.201 21.524 hybrid contribution 0.393 0.076 0.460 0.610 sum -11.450 9.665 -14.741 21.019 Atomic orbital electron populations 1.21858 0.98372 0.98953 1.00811 1.22016 0.92670 0.99339 1.03316 1.20720 0.95066 0.88807 0.78642 0.93399 1.21101 0.89728 1.38558 1.06136 0.91266 1.24872 0.99146 0.94846 0.95085 1.69905 1.35186 1.38105 1.09491 0.86244 0.84074 0.77815 0.78162 1.19505 1.20799 1.20751 1.86625 1.33156 1.61957 1.43774 1.19443 0.81008 0.76236 0.84949 1.90777 1.55875 1.58933 1.33805 1.20842 0.95022 1.05718 0.92581 1.74110 1.21185 1.12794 0.99386 1.45143 1.13011 1.37209 1.11367 1.22118 1.02509 1.03856 0.76797 1.21035 0.91529 1.05859 0.94357 1.19855 0.97215 1.03320 0.94898 1.19998 0.92922 0.98343 0.96858 1.21664 0.99793 0.98848 0.95448 1.21564 0.95956 1.02502 0.95182 1.20164 0.91171 0.98219 0.98506 0.94876 0.92725 0.94934 0.94002 0.87306 0.92532 0.89756 0.88379 0.88962 0.90591 0.89612 0.91745 0.91225 0.91071 0.91324 0.90646 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.57 37.16 0.32 -2.98 16 2 C -0.14 -3.53 5.49 -26.73 -0.15 -3.68 16 3 C 0.22 6.16 2.25 -27.88 -0.06 6.10 16 4 H 0.05 1.46 7.16 -51.93 -0.37 1.09 16 5 C -0.52 -15.11 8.90 -34.44 -0.31 -15.42 16 6 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.66 11.29 55.43 0.63 -25.04 16 9 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 O -0.34 -8.97 9.82 -40.57 -0.40 -9.37 16 14 C 0.54 12.85 6.42 34.54 0.22 13.07 16 15 O -0.51 -12.35 12.99 -19.26 -0.25 -12.60 16 16 C 0.02 0.32 7.16 -83.01 -0.59 -0.28 16 17 N -0.24 -4.47 12.02 33.27 0.40 -4.07 16 18 N -0.28 -3.87 3.69 -63.96 -0.24 -4.11 16 19 C 0.09 0.70 11.17 59.85 0.67 1.36 16 20 C 0.00 -0.04 6.71 -82.45 -0.55 -0.59 16 21 C -0.14 -2.33 5.99 -104.87 -0.63 -2.96 16 22 C -0.04 -0.60 5.54 -27.79 -0.15 -0.76 16 23 C -0.12 -1.18 5.91 -26.42 -0.16 -1.33 16 24 C -0.11 -0.91 5.89 -26.47 -0.16 -1.07 16 25 C -0.04 -0.35 5.89 -27.67 -0.16 -0.51 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 1.30 7.79 -51.93 -0.40 0.89 16 28 H 0.03 0.74 6.06 -51.93 -0.31 0.42 16 29 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.11 3.03 5.95 -51.93 -0.31 2.72 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.43 7.52 -51.93 -0.39 0.04 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.34 7.67 -51.93 -0.40 0.94 16 37 H 0.06 0.63 8.12 -51.93 -0.42 0.20 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 41 H 0.08 0.46 7.73 -51.93 -0.40 0.06 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -34.00 339.21 -7.93 -41.93 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.36 Total: -1.12 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.81 Total: -7.38 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.79 Total: -33.22 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.65 Total: -21.97 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.00 -7.93 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340190.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.898 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds