Wall clock time and date at job start Tue Mar 31 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47378 * 2 1 4 4 H 1.09005 * 109.46863 * 55.00220 * 3 2 1 5 5 C 1.50697 * 109.47078 * 174.99478 * 3 2 1 6 6 H 1.08008 * 119.99988 * 120.00409 * 5 3 2 7 7 C 1.37879 * 120.00331 * 300.00276 * 5 3 2 8 8 N 1.31516 * 119.99980 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99903 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47301 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46896 * 119.99807 * 9 7 5 12 12 H 1.48493 * 109.47272 * 239.99780 * 9 7 5 13 13 O 1.45193 * 109.47195 * 295.00009 * 3 2 1 14 14 C 1.34729 * 117.00319 * 89.99883 * 13 3 2 15 15 O 1.21491 * 119.99993 * 0.02562 * 14 13 3 16 16 C 1.47586 * 120.00246 * 179.97438 * 14 13 3 17 17 N 1.32252 * 126.68222 * 359.97438 * 16 14 13 18 18 N 1.28844 * 110.14006 * 180.02562 * 17 16 14 19 19 C 1.46500 * 124.97289 * 179.97438 * 18 17 16 20 20 C 1.34328 * 110.05297 * 359.92263 * 18 17 16 21 21 C 1.35571 * 107.22561 * 0.13383 * 20 18 17 22 22 C 1.50376 * 124.62381 * 179.74686 * 21 20 18 23 23 C 1.53483 * 108.26414 * 343.74978 * 22 21 20 24 24 C 1.53110 * 109.50451 * 49.53161 * 23 22 21 25 25 C 1.50710 * 128.89914 * 180.15907 * 20 18 17 26 26 H 1.08994 * 109.47564 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47193 * 300.00677 * 1 2 3 28 28 H 1.09006 * 109.46371 * 59.99935 * 1 2 3 29 29 H 1.09000 * 109.47297 * 240.00267 * 2 1 3 30 30 H 1.09000 * 109.47030 * 119.99939 * 2 1 3 31 31 H 0.96996 * 119.99451 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46907 * 269.97443 * 19 18 17 33 33 H 1.08999 * 109.47155 * 29.97722 * 19 18 17 34 34 H 1.09004 * 109.46903 * 149.97041 * 19 18 17 35 35 H 1.09003 * 109.69647 * 103.46259 * 22 21 20 36 36 H 1.08997 * 109.70442 * 224.02500 * 22 21 20 37 37 H 1.08997 * 109.49755 * 289.50806 * 23 22 21 38 38 H 1.09008 * 109.44406 * 169.52397 * 23 22 21 39 39 H 1.09002 * 109.44465 * 169.86463 * 24 23 22 40 40 H 1.09003 * 109.43847 * 49.93587 * 24 23 22 41 41 H 1.09006 * 109.69216 * 43.63633 * 25 20 18 42 42 H 1.08997 * 109.68917 * 283.06382 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1240 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3364 2.1730 9 14 6.0050 0.8798 1.3813 10 1 6.5988 1.5451 0.1938 11 1 6.3999 1.6155 2.6094 12 1 6.4961 -0.5192 1.4629 13 8 1.6560 2.0916 -1.2406 14 6 0.4684 2.7278 -1.2560 15 8 -0.2270 2.7402 -0.2599 16 6 0.0128 3.4106 -2.4826 17 7 0.6596 3.4815 -3.6340 18 7 -0.0295 4.1553 -4.4891 19 6 0.3824 4.4332 -5.8673 20 6 -1.1814 4.5646 -3.9324 21 6 -1.1924 4.1127 -2.6542 22 6 -2.3047 4.3552 -1.6718 23 6 -3.1781 5.4984 -2.2066 24 6 -3.5429 5.2225 -3.6678 25 6 -2.2950 5.3727 -4.5473 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0613 2.9499 32 1 0.9432 5.3673 -5.8975 33 1 1.0113 3.6199 -6.2295 34 1 -0.5009 4.5189 -6.5002 35 1 -2.9053 3.4517 -1.5665 36 1 -1.8865 4.6332 -0.7044 37 1 -2.6287 6.4374 -2.1405 38 1 -4.0890 5.5679 -1.6118 39 1 -4.3032 5.9329 -3.9923 40 1 -3.9314 4.2081 -3.7594 41 1 -2.5063 5.0031 -5.5507 42 1 -2.0039 6.4220 -4.5956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835340190.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:20 Heat of formation + Delta-G solvation = -47.920834 kcal Electronic energy + Delta-G solvation = -23979.593369 eV Core-core repulsion = 20538.933494 eV Total energy + Delta-G solvation = -3440.659875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.90574 -41.12811 -37.95132 -37.55278 -35.53121 -34.78015 -33.36154 -31.26121 -30.85086 -29.55286 -28.37844 -25.54108 -24.84071 -24.09042 -22.88161 -22.08545 -21.02342 -20.03021 -18.87918 -18.23817 -17.92047 -17.57308 -17.04742 -16.78244 -16.32532 -15.63038 -14.97081 -14.82999 -14.71168 -14.55532 -14.40008 -14.11501 -14.03178 -13.63392 -13.42073 -13.36516 -13.28849 -13.13580 -12.88061 -12.83931 -12.58439 -12.15858 -11.86707 -11.82098 -11.74788 -11.67945 -11.61457 -11.43688 -11.27255 -10.84936 -10.55784 -10.16452 -9.63700 -8.29470 -6.46397 0.32072 1.02687 1.38330 1.40423 1.45837 1.55263 2.07776 2.14370 2.41362 2.99411 3.34511 3.51959 3.89208 4.04854 4.09766 4.21933 4.27608 4.33244 4.35776 4.36030 4.44136 4.54358 4.59063 4.65285 4.67194 4.75804 4.80587 4.97637 5.03554 5.06268 5.12606 5.18553 5.25229 5.29717 5.31556 5.44762 5.49159 5.50429 5.62927 5.87847 5.92565 6.07199 6.55798 6.75065 7.03322 7.25088 8.78033 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023202 B = 0.004103 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.509307 B = 6823.011942 C = 7476.714929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.059 0.941 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.983 3.017 10 H -0.268 1.268 11 H -0.272 1.272 12 H -0.267 1.267 13 O -0.356 6.356 14 C 0.535 3.465 15 O -0.526 6.526 16 C -0.031 4.031 17 N -0.274 5.274 18 N -0.265 5.265 19 C 0.071 3.929 20 C 0.021 3.979 21 C -0.167 4.167 22 C -0.045 4.045 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.040 4.040 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.028 0.972 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.272 0.728 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.137 0.863 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.771 11.482 -17.919 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.077 0.923 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.806 3.194 10 H -0.192 1.192 11 H -0.197 1.197 12 H -0.192 1.192 13 O -0.272 6.272 14 C 0.379 3.621 15 O -0.415 6.415 16 C -0.185 4.185 17 N -0.112 5.112 18 N -0.054 5.054 19 C -0.067 4.067 20 C -0.105 4.105 21 C -0.176 4.176 22 C -0.083 4.083 23 C -0.151 4.151 24 C -0.149 4.149 25 C -0.078 4.078 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.155 0.845 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.129 0.871 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.875 11.032 -18.071 24.780 hybrid contribution 0.651 -0.297 1.253 1.443 sum -12.224 10.735 -16.818 23.399 Atomic orbital electron populations 1.21696 0.96232 1.00670 0.99941 1.21862 0.94532 0.97899 1.02292 1.20473 0.94743 0.89407 0.78300 0.97248 1.21320 0.90379 1.40268 1.07019 0.92257 1.25801 1.04428 0.93658 0.94123 1.70011 1.37404 1.37765 1.09810 0.85140 0.77420 0.78519 0.78330 1.19239 1.19745 1.19234 1.86609 1.35021 1.62801 1.42778 1.20104 0.79850 0.75725 0.86410 1.90734 1.56027 1.59710 1.35043 1.20601 0.97473 1.08357 0.92063 1.73992 1.22635 1.14791 0.99809 1.45748 1.12550 1.34714 1.12350 1.22720 1.05085 1.04810 0.74056 1.21815 0.91787 1.03870 0.93022 1.20216 0.96558 1.03739 0.97127 1.20023 0.93000 0.99849 0.95454 1.21658 0.99390 0.96734 0.97366 1.21606 0.96697 1.03301 0.93330 1.20498 0.88856 0.98713 0.99737 0.91678 0.94065 0.95297 0.94000 0.89001 0.91858 0.87669 0.88376 0.84523 0.91527 0.92788 0.91430 0.89697 0.87481 0.91869 0.87052 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.16 8.57 71.98 0.62 -5.54 16 2 C -0.13 -7.00 5.49 30.59 0.17 -6.83 16 3 C 0.22 13.38 2.25 29.85 0.07 13.44 16 4 H 0.01 0.64 7.16 -2.38 -0.02 0.62 16 5 C -0.55 -33.86 8.90 25.60 0.23 -33.63 16 6 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 7 C 0.02 1.14 5.29 84.65 0.45 1.59 16 8 N -0.91 -54.11 11.29 21.45 0.24 -53.86 16 9 Si 0.98 45.01 29.54 68.60 2.03 47.03 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 O -0.36 -20.19 9.82 -56.40 -0.55 -20.74 16 14 C 0.54 27.38 6.42 70.29 0.45 27.84 16 15 O -0.53 -27.94 12.99 19.87 0.26 -27.69 16 16 C -0.03 -1.32 7.16 42.11 0.30 -1.01 16 17 N -0.27 -10.47 12.02 -48.67 -0.58 -11.05 16 18 N -0.27 -6.86 3.69 -356.28 -1.31 -8.18 16 19 C 0.07 0.87 11.17 127.77 1.43 2.30 16 20 C 0.02 0.51 6.71 41.56 0.28 0.79 16 21 C -0.17 -5.51 5.99 -20.02 -0.12 -5.63 16 22 C -0.04 -1.30 5.54 29.91 0.17 -1.14 16 23 C -0.11 -2.01 5.91 30.79 0.18 -1.83 16 24 C -0.11 -1.30 5.89 30.77 0.18 -1.12 16 25 C -0.04 -0.45 5.89 29.99 0.18 -0.27 16 26 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.04 2.05 7.79 -2.39 -0.02 2.03 16 28 H 0.03 1.37 6.06 -2.38 -0.01 1.36 16 29 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.09 5.34 5.95 -2.39 -0.01 5.32 16 31 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.14 0.49 7.52 -2.38 -0.02 0.48 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 36 H 0.05 1.85 7.67 -2.39 -0.02 1.83 16 37 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 38 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 41 H 0.11 0.59 7.73 -2.38 -0.02 0.57 16 42 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -81.24 339.21 5.66 -75.58 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.01 Total: 9.96 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 4.57 Total: -11.05 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -1.66 Total: -73.09 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -0.30 Total: -48.43 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -81.24 5.66 -75.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340190.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.657 kcal (2) G-P(sol) polarization free energy of solvation -81.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds