Wall clock time and date at job start Tue Mar 31 2020 06:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47220 * 2 1 4 4 H 1.09004 * 109.47520 * 304.99921 * 3 2 1 5 5 C 1.50702 * 109.47790 * 184.99797 * 3 2 1 6 6 H 1.07996 * 120.00221 * 240.00493 * 5 3 2 7 7 C 1.37881 * 119.99332 * 59.99680 * 5 3 2 8 8 N 1.31506 * 120.00429 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99662 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47165 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46846 * 120.00413 * 9 7 5 12 12 H 1.48496 * 109.47405 * 240.00565 * 9 7 5 13 13 O 1.45209 * 109.47074 * 64.99922 * 3 2 1 14 14 C 1.34725 * 116.99928 * 270.00177 * 13 3 2 15 15 O 1.21497 * 120.00348 * 359.97438 * 14 13 3 16 16 C 1.47581 * 120.00104 * 179.97438 * 14 13 3 17 17 N 1.32260 * 126.68199 * 359.97438 * 16 14 13 18 18 N 1.28839 * 110.14227 * 180.02562 * 17 16 14 19 19 C 1.46499 * 124.97379 * 179.91068 * 18 17 16 20 20 C 1.34333 * 110.05329 * 359.93148 * 18 17 16 21 21 C 1.35568 * 107.22592 * 0.12392 * 20 18 17 22 22 C 1.50376 * 124.62464 * 179.83519 * 21 20 18 23 23 C 1.53470 * 108.28466 * 343.76699 * 22 21 20 24 24 C 1.53106 * 109.51076 * 49.48075 * 23 22 21 25 25 C 1.50625 * 128.91005 * 180.22056 * 20 18 17 26 26 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47360 * 300.00122 * 1 2 3 28 28 H 1.08999 * 109.47072 * 59.99924 * 1 2 3 29 29 H 1.09000 * 109.47207 * 240.00476 * 2 1 3 30 30 H 1.08999 * 109.47072 * 120.00076 * 2 1 3 31 31 H 0.97003 * 120.00303 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47221 * 270.02244 * 19 18 17 33 33 H 1.08998 * 109.47367 * 30.02745 * 19 18 17 34 34 H 1.09001 * 109.46688 * 150.02390 * 19 18 17 35 35 H 1.09003 * 109.70204 * 224.06350 * 22 21 20 36 36 H 1.09000 * 109.73307 * 103.48329 * 22 21 20 37 37 H 1.08997 * 109.46796 * 289.46551 * 23 22 21 38 38 H 1.08999 * 109.46419 * 169.49225 * 23 22 21 39 39 H 1.09002 * 109.44324 * 50.00445 * 24 23 22 40 40 H 1.09003 * 109.44375 * 169.93559 * 24 23 22 41 41 H 1.09004 * 109.64856 * 43.52965 * 25 20 18 42 42 H 1.09005 * 109.69892 * 282.97797 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3374 -2.1732 9 14 6.0050 0.8802 -1.3811 10 1 6.5988 1.5444 -0.1931 11 1 6.4962 -0.5189 -1.4627 12 1 6.4000 1.6159 -2.6091 13 8 1.6558 2.0917 1.2408 14 6 0.4683 2.7277 1.2561 15 8 -0.2271 2.7401 0.2599 16 6 0.0121 3.4095 2.4829 17 7 0.6579 3.4788 3.6350 18 7 -0.0319 4.1511 4.4906 19 6 0.3778 4.4250 5.8702 20 6 -1.1819 4.5640 3.9325 21 6 -1.1936 4.1109 2.6549 22 6 -2.3084 4.3487 1.6741 23 6 -3.5486 4.8028 2.4557 24 6 -3.1642 5.9348 3.4121 25 6 -2.2916 5.3782 4.5445 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0604 -2.9502 32 1 0.0191 3.6275 6.5208 33 1 1.4653 4.4755 5.9231 34 1 -0.0462 5.3758 6.1931 35 1 -2.5293 3.4257 1.1380 36 1 -2.0162 5.1239 0.9657 37 1 -3.9454 3.9636 3.0269 38 1 -4.3073 5.1583 1.7584 39 1 -2.6080 6.6974 2.8669 40 1 -4.0673 6.3762 3.8336 41 1 -1.8679 6.2012 5.1200 42 1 -2.8949 4.7460 5.1961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835340191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:24 Heat of formation + Delta-G solvation = -27.064186 kcal Electronic energy + Delta-G solvation = -23980.301502 eV Core-core repulsion = 20540.546039 eV Total energy + Delta-G solvation = -3439.755463 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.72108 -39.19117 -37.02341 -35.63737 -33.74859 -33.32917 -31.25960 -30.39727 -29.82902 -27.78077 -26.88891 -24.01532 -23.43946 -22.58963 -21.93816 -20.21800 -19.35668 -18.85516 -17.16448 -16.54242 -16.39842 -16.31403 -15.24969 -14.99674 -14.78436 -14.39968 -13.92138 -13.76636 -13.59025 -13.17864 -13.07758 -12.84476 -12.71157 -12.61007 -12.09585 -11.90840 -11.37946 -11.25606 -11.09206 -11.03553 -10.93383 -10.88700 -10.72558 -10.56991 -10.46710 -10.19844 -9.73113 -9.58878 -9.27597 -8.96363 -8.69956 -8.48531 -8.37495 -6.11063 -4.16937 1.81094 2.18582 2.48109 3.28673 3.35197 3.40911 3.75477 3.83967 4.32706 4.40146 4.43393 4.69365 4.70717 4.90969 5.05321 5.12159 5.16473 5.21051 5.26157 5.34178 5.45248 5.49190 5.71023 5.86389 5.87843 6.02993 6.11881 6.27653 6.32149 6.35116 6.39663 6.52106 6.65064 6.87056 6.97729 7.05811 7.26338 7.33718 7.69986 7.82638 7.97736 8.09267 8.24828 8.75879 9.01149 9.47758 10.95954 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.004109 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.667734 B = 6812.411509 C = 7483.740824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.048 0.952 5 C -0.517 4.517 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.340 6.340 14 C 0.542 3.458 15 O -0.506 6.506 16 C 0.016 3.984 17 N -0.239 5.239 18 N -0.280 5.280 19 C 0.088 3.912 20 C -0.003 4.003 21 C -0.143 4.143 22 C -0.043 4.043 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.042 4.042 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.054 0.946 29 H 0.109 0.891 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.714 10.110 15.030 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.555 4.555 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.255 6.255 14 C 0.384 3.616 15 O -0.394 6.394 16 C -0.142 4.142 17 N -0.075 5.075 18 N -0.067 5.067 19 C -0.053 4.053 20 C -0.128 4.128 21 C -0.153 4.153 22 C -0.081 4.081 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.081 4.081 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.804 9.658 15.173 21.513 hybrid contribution 0.388 0.065 -0.456 0.602 sum -11.416 9.723 14.716 21.011 Atomic orbital electron populations 1.21857 0.98378 0.98959 1.00805 1.22014 0.92668 0.99339 1.03316 1.20724 0.95067 0.88804 0.78638 0.93393 1.21101 0.89726 1.38565 1.06140 0.91263 1.24869 0.99143 0.94846 0.95080 1.69901 1.35193 1.38123 1.09469 0.86245 0.84082 0.77817 0.78161 1.19505 1.20754 1.20794 1.86627 1.33137 1.61965 1.43783 1.19442 0.81020 0.76224 0.84951 1.90779 1.55820 1.59028 1.33771 1.20844 0.95111 1.05687 0.92525 1.74110 1.21210 1.12855 0.99296 1.45143 1.13050 1.37287 1.11248 1.22117 1.03711 1.02683 0.76771 1.21014 0.91646 1.05682 0.94437 1.19855 0.97180 1.03227 0.95016 1.19995 0.90428 1.02589 0.95118 1.21659 0.97648 0.98151 0.98282 1.21564 0.99061 0.98423 0.96165 1.20148 0.92689 0.97319 0.97908 0.94871 0.94931 0.92730 0.87310 0.93998 0.92528 0.89783 0.88358 0.88954 0.89645 0.90551 0.91777 0.91222 0.91298 0.91071 0.90643 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.56 37.16 0.32 -2.98 16 2 C -0.14 -3.53 5.49 -26.73 -0.15 -3.68 16 3 C 0.22 6.16 2.25 -27.88 -0.06 6.10 16 4 H 0.05 1.46 7.16 -51.93 -0.37 1.09 16 5 C -0.52 -15.11 8.90 -34.44 -0.31 -15.42 16 6 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -25.66 11.29 55.43 0.63 -25.04 16 9 Si 0.91 21.67 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 O -0.34 -8.97 9.82 -40.56 -0.40 -9.37 16 14 C 0.54 12.85 6.42 34.54 0.22 13.07 16 15 O -0.51 -12.36 12.99 -19.26 -0.25 -12.61 16 16 C 0.02 0.31 7.16 -83.00 -0.59 -0.28 16 17 N -0.24 -4.47 12.02 33.27 0.40 -4.07 16 18 N -0.28 -3.87 3.69 -63.99 -0.24 -4.11 16 19 C 0.09 0.70 11.17 59.85 0.67 1.36 16 20 C 0.00 -0.04 6.71 -82.49 -0.55 -0.59 16 21 C -0.14 -2.33 5.99 -104.87 -0.63 -2.96 16 22 C -0.04 -0.60 5.54 -27.80 -0.15 -0.76 16 23 C -0.12 -1.17 5.91 -26.43 -0.16 -1.33 16 24 C -0.11 -0.92 5.89 -26.47 -0.16 -1.07 16 25 C -0.04 -0.35 5.89 -27.71 -0.16 -0.51 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.74 6.06 -51.93 -0.31 0.42 16 28 H 0.05 1.29 7.79 -51.93 -0.40 0.89 16 29 H 0.11 3.02 5.95 -51.93 -0.31 2.72 16 30 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.44 7.52 -51.93 -0.39 0.05 16 35 H 0.09 1.33 7.68 -51.93 -0.40 0.93 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.47 7.73 -51.93 -0.40 0.07 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -34.00 339.21 -7.94 -41.93 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.36 Total: -1.12 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.81 Total: -7.38 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.79 Total: -33.21 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.65 Total: -21.97 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.00 -7.94 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.868 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds