Wall clock time and date at job start Tue Mar 31 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47220 * 2 1 4 4 H 1.09004 * 109.47520 * 304.99921 * 3 2 1 5 5 C 1.50702 * 109.47790 * 184.99797 * 3 2 1 6 6 H 1.07996 * 120.00221 * 240.00493 * 5 3 2 7 7 C 1.37881 * 119.99332 * 59.99680 * 5 3 2 8 8 N 1.31506 * 120.00429 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99662 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47165 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46846 * 120.00413 * 9 7 5 12 12 H 1.48496 * 109.47405 * 240.00565 * 9 7 5 13 13 O 1.45209 * 109.47074 * 64.99922 * 3 2 1 14 14 C 1.34725 * 116.99928 * 270.00177 * 13 3 2 15 15 O 1.21497 * 120.00348 * 359.97438 * 14 13 3 16 16 C 1.47581 * 120.00104 * 179.97438 * 14 13 3 17 17 N 1.32260 * 126.68199 * 359.97438 * 16 14 13 18 18 N 1.28839 * 110.14227 * 180.02562 * 17 16 14 19 19 C 1.46499 * 124.97379 * 179.91068 * 18 17 16 20 20 C 1.34333 * 110.05329 * 359.93148 * 18 17 16 21 21 C 1.35568 * 107.22592 * 0.12392 * 20 18 17 22 22 C 1.50376 * 124.62464 * 179.83519 * 21 20 18 23 23 C 1.53470 * 108.28466 * 343.76699 * 22 21 20 24 24 C 1.53106 * 109.51076 * 49.48075 * 23 22 21 25 25 C 1.50625 * 128.91005 * 180.22056 * 20 18 17 26 26 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47360 * 300.00122 * 1 2 3 28 28 H 1.08999 * 109.47072 * 59.99924 * 1 2 3 29 29 H 1.09000 * 109.47207 * 240.00476 * 2 1 3 30 30 H 1.08999 * 109.47072 * 120.00076 * 2 1 3 31 31 H 0.97003 * 120.00303 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47221 * 270.02244 * 19 18 17 33 33 H 1.08998 * 109.47367 * 30.02745 * 19 18 17 34 34 H 1.09001 * 109.46688 * 150.02390 * 19 18 17 35 35 H 1.09003 * 109.70204 * 224.06350 * 22 21 20 36 36 H 1.09000 * 109.73307 * 103.48329 * 22 21 20 37 37 H 1.08997 * 109.46796 * 289.46551 * 23 22 21 38 38 H 1.08999 * 109.46419 * 169.49225 * 23 22 21 39 39 H 1.09002 * 109.44324 * 50.00445 * 24 23 22 40 40 H 1.09003 * 109.44375 * 169.93559 * 24 23 22 41 41 H 1.09004 * 109.64856 * 43.52965 * 25 20 18 42 42 H 1.09005 * 109.69892 * 282.97797 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3374 -2.1732 9 14 6.0050 0.8802 -1.3811 10 1 6.5988 1.5444 -0.1931 11 1 6.4962 -0.5189 -1.4627 12 1 6.4000 1.6159 -2.6091 13 8 1.6558 2.0917 1.2408 14 6 0.4683 2.7277 1.2561 15 8 -0.2271 2.7401 0.2599 16 6 0.0121 3.4095 2.4829 17 7 0.6579 3.4788 3.6350 18 7 -0.0319 4.1511 4.4906 19 6 0.3778 4.4250 5.8702 20 6 -1.1819 4.5640 3.9325 21 6 -1.1936 4.1109 2.6549 22 6 -2.3084 4.3487 1.6741 23 6 -3.5486 4.8028 2.4557 24 6 -3.1642 5.9348 3.4121 25 6 -2.2916 5.3782 4.5445 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0604 -2.9502 32 1 0.0191 3.6275 6.5208 33 1 1.4653 4.4755 5.9231 34 1 -0.0462 5.3758 6.1931 35 1 -2.5293 3.4257 1.1380 36 1 -2.0162 5.1239 0.9657 37 1 -3.9454 3.9636 3.0269 38 1 -4.3073 5.1583 1.7584 39 1 -2.6080 6.6974 2.8669 40 1 -4.0673 6.3762 3.8336 41 1 -1.8679 6.2012 5.1200 42 1 -2.8949 4.7460 5.1961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835340191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:23 Heat of formation + Delta-G solvation = -47.942801 kcal Electronic energy + Delta-G solvation = -23981.206866 eV Core-core repulsion = 20540.546039 eV Total energy + Delta-G solvation = -3440.660827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.90646 -41.12711 -37.95257 -37.55265 -35.53163 -34.78077 -33.36326 -31.26546 -30.85043 -29.55315 -28.37873 -25.54092 -24.84232 -24.08970 -22.88283 -22.08682 -21.02299 -20.03194 -18.88620 -18.18750 -17.92170 -17.64363 -17.01575 -16.78460 -16.32058 -15.63398 -14.96371 -14.82662 -14.72400 -14.55223 -14.39416 -14.20289 -13.93552 -13.65347 -13.42383 -13.36360 -13.28966 -13.13539 -12.88209 -12.83757 -12.58338 -12.15842 -11.86780 -11.82206 -11.76284 -11.67171 -11.61227 -11.43171 -11.27160 -10.85103 -10.55848 -10.16389 -9.63726 -8.29427 -6.46372 0.32048 1.02622 1.38351 1.40456 1.45838 1.55280 2.07845 2.14301 2.41396 2.99465 3.34440 3.52103 3.89265 4.04856 4.09759 4.21817 4.27798 4.33150 4.35732 4.36096 4.44160 4.54132 4.59078 4.65271 4.67222 4.75795 4.80522 4.97678 5.03534 5.06052 5.12712 5.18461 5.25291 5.29627 5.31533 5.44737 5.49211 5.50470 5.62889 5.87816 5.92518 6.07169 6.55832 6.75056 7.03327 7.25105 8.78067 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.004109 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.667734 B = 6812.411509 C = 7483.740824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.059 0.941 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.983 3.017 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.272 1.272 13 O -0.356 6.356 14 C 0.535 3.465 15 O -0.526 6.526 16 C -0.031 4.031 17 N -0.273 5.273 18 N -0.265 5.265 19 C 0.071 3.929 20 C 0.022 3.978 21 C -0.167 4.167 22 C -0.045 4.045 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.040 4.040 26 H 0.064 0.936 27 H 0.028 0.972 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.272 0.728 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.731 11.548 17.890 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.806 3.194 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.197 1.197 13 O -0.272 6.272 14 C 0.379 3.621 15 O -0.415 6.415 16 C -0.185 4.185 17 N -0.112 5.112 18 N -0.054 5.054 19 C -0.067 4.067 20 C -0.105 4.105 21 C -0.176 4.176 22 C -0.084 4.084 23 C -0.151 4.151 24 C -0.150 4.150 25 C -0.078 4.078 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.154 0.846 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.836 11.095 18.043 24.767 hybrid contribution 0.643 -0.311 -1.247 1.437 sum -12.193 10.784 16.796 23.390 Atomic orbital electron populations 1.21694 0.96238 1.00673 0.99938 1.21860 0.94528 0.97903 1.02290 1.20477 0.94745 0.89401 0.78296 0.97241 1.21319 0.90376 1.40275 1.07022 0.92249 1.25798 1.04424 0.93658 0.94118 1.70007 1.37411 1.37782 1.09789 0.85141 0.77427 0.78516 0.78332 1.19237 1.19247 1.19735 1.86611 1.34997 1.62811 1.42789 1.20103 0.79858 0.75712 0.86416 1.90735 1.55960 1.59816 1.35010 1.20603 0.97502 1.08379 0.92013 1.73992 1.22679 1.14808 0.99741 1.45748 1.12602 1.34764 1.12245 1.22718 1.04375 1.05776 0.73800 1.21793 0.91897 1.03759 0.93037 1.20215 0.96496 1.03686 0.97233 1.20022 0.92178 1.00956 0.95203 1.21651 0.95505 0.99235 0.98699 1.21608 1.00474 0.97282 0.95626 1.20482 0.91061 0.97981 0.98281 0.91678 0.95299 0.94066 0.89002 0.94001 0.91854 0.87546 0.88439 0.84581 0.92594 0.91762 0.91275 0.89723 0.92012 0.87457 0.87140 0.87494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.16 8.56 71.98 0.62 -5.55 16 2 C -0.13 -6.99 5.49 30.59 0.17 -6.83 16 3 C 0.22 13.38 2.25 29.85 0.07 13.44 16 4 H 0.01 0.64 7.16 -2.38 -0.02 0.63 16 5 C -0.55 -33.86 8.90 25.60 0.23 -33.63 16 6 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -54.10 11.29 21.45 0.24 -53.86 16 9 Si 0.98 45.00 29.54 68.60 2.03 47.02 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 O -0.36 -20.19 9.82 -56.35 -0.55 -20.74 16 14 C 0.54 27.38 6.42 70.29 0.45 27.83 16 15 O -0.53 -27.95 12.99 19.85 0.26 -27.69 16 16 C -0.03 -1.32 7.16 42.11 0.30 -1.02 16 17 N -0.27 -10.46 12.02 -48.66 -0.58 -11.05 16 18 N -0.27 -6.86 3.69 -356.38 -1.31 -8.17 16 19 C 0.07 0.87 11.17 127.77 1.43 2.30 16 20 C 0.02 0.51 6.71 41.53 0.28 0.79 16 21 C -0.17 -5.51 5.99 -20.02 -0.12 -5.63 16 22 C -0.05 -1.31 5.54 29.90 0.17 -1.15 16 23 C -0.11 -1.99 5.91 30.79 0.18 -1.80 16 24 C -0.11 -1.32 5.89 30.76 0.18 -1.14 16 25 C -0.04 -0.45 5.89 29.96 0.18 -0.27 16 26 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.03 1.37 6.06 -2.39 -0.01 1.36 16 28 H 0.04 2.05 7.79 -2.39 -0.02 2.03 16 29 H 0.09 5.33 5.95 -2.39 -0.01 5.32 16 30 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.14 0.51 7.52 -2.39 -0.02 0.49 16 35 H 0.06 1.89 7.68 -2.39 -0.02 1.88 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 40 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.11 0.60 7.73 -2.39 -0.02 0.58 16 42 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -81.21 339.21 5.66 -75.55 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.01 Total: 9.98 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 4.57 Total: -11.05 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -1.66 Total: -73.08 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -0.30 Total: -48.43 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -81.21 5.66 -75.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.610 kcal (2) G-P(sol) polarization free energy of solvation -81.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds