Wall clock time and date at job start Tue Mar 31 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47293 * 2 1 4 4 H 1.09002 * 109.46742 * 304.99926 * 3 2 1 5 5 C 1.53000 * 109.46966 * 64.99706 * 3 2 1 6 6 C 1.52996 * 109.47426 * 184.99710 * 3 2 1 7 7 O 1.42895 * 109.47390 * 174.99935 * 6 3 2 8 8 N 1.41599 * 114.00222 * 180.02562 * 7 6 3 9 9 C 1.34773 * 120.00047 * 180.02562 * 8 7 6 10 10 O 1.21584 * 120.00200 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00229 * 179.97438 * 9 8 7 12 12 C 1.39948 * 120.00328 * 174.84452 * 11 9 8 13 13 C 1.39290 * 119.94848 * 145.76667 * 12 11 9 14 14 C 1.38485 * 120.42993 * 180.02562 * 13 12 11 15 15 C 1.37683 * 120.32491 * 359.97438 * 14 13 12 16 16 C 1.40743 * 119.88093 * 359.97438 * 15 14 13 17 17 C 1.41403 * 120.20872 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00451 * 205.17793 * 17 16 15 19 19 C 1.39932 * 120.00002 * 25.18375 * 17 16 15 20 20 N 1.30827 * 119.99918 * 16.77791 * 19 17 16 21 21 Si 1.86802 * 119.99986 * 196.78304 * 19 17 16 22 22 H 1.48508 * 109.47174 * 94.96182 * 21 19 17 23 23 H 1.48498 * 109.47129 * 214.96074 * 21 19 17 24 24 H 1.48503 * 109.47144 * 334.96438 * 21 19 17 25 25 C 1.38239 * 119.94818 * 325.50304 * 12 11 9 26 26 H 1.09004 * 109.47033 * 60.00598 * 1 2 3 27 27 H 1.09004 * 109.47189 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47326 * 299.99927 * 1 2 3 29 29 H 1.08998 * 109.47326 * 240.00073 * 2 1 3 30 30 H 1.09004 * 109.47220 * 120.00164 * 2 1 3 31 31 H 1.09004 * 109.47078 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.47211 * 60.00507 * 5 3 2 33 33 H 1.08999 * 109.47254 * 300.00405 * 5 3 2 34 34 H 1.08998 * 109.47429 * 295.00325 * 6 3 2 35 35 H 1.08997 * 109.47058 * 54.99835 * 6 3 2 36 36 H 0.97003 * 119.99861 * 359.97438 * 8 7 6 37 37 H 0.97000 * 119.99430 * 354.85617 * 11 9 8 38 38 H 1.07999 * 119.78090 * 0.02562 * 13 12 11 39 39 H 1.08008 * 119.83964 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.05953 * 179.97438 * 15 14 13 41 41 H 0.97005 * 120.00132 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.15878 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4443 -0.1256 7 8 4.0315 2.7898 -0.2428 8 7 5.4376 2.9031 -0.3657 9 6 6.0080 4.1185 -0.4833 10 8 5.3153 5.1177 -0.4843 11 7 7.3464 4.2264 -0.5999 12 6 7.9302 5.4773 -0.8301 13 6 9.1744 5.7759 -0.2796 14 6 9.7611 7.0107 -0.5006 15 6 9.1204 7.9574 -1.2680 16 6 7.8633 7.6695 -1.8316 17 6 7.1989 8.6369 -2.6205 18 1 6.1232 8.6117 -2.7135 19 6 7.9351 9.6268 -3.2808 20 7 9.2245 9.4811 -3.4477 21 14 7.0770 11.1563 -3.9239 22 1 7.1853 12.2443 -2.9189 23 1 7.7187 11.5879 -5.1916 24 1 5.6447 10.8529 -4.1723 25 6 7.2737 6.4127 -1.6080 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9982 3.1543 1.3072 32 1 2.0698 1.5875 2.1492 33 1 0.5489 2.1252 1.3969 34 1 4.0029 0.9836 0.7597 35 1 3.8571 0.8800 -1.0112 36 1 5.9903 2.1060 -0.3646 37 1 7.9050 3.4370 -0.5243 38 1 9.6848 5.0396 0.3234 39 1 10.7264 7.2320 -0.0695 40 1 9.5816 8.9191 -1.4372 41 1 9.7349 10.1672 -3.9058 42 1 6.3111 6.1804 -2.0391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836764182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:59 Heat of formation + Delta-G solvation = -14.618761 kcal Electronic energy + Delta-G solvation = -22453.332544 eV Core-core repulsion = 19014.116755 eV Total energy + Delta-G solvation = -3439.215789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.78526 -38.30350 -37.14490 -35.90081 -34.34748 -33.11109 -31.85308 -29.96023 -29.76466 -27.73813 -26.79017 -25.23732 -23.58148 -22.03597 -20.86575 -20.53514 -19.92603 -18.29388 -18.02391 -17.13910 -16.17214 -15.46430 -15.22450 -15.05844 -14.84387 -14.51581 -14.39440 -14.12795 -13.79547 -13.12892 -13.01456 -12.86052 -12.47921 -12.30174 -12.15592 -12.01091 -11.62353 -11.33542 -11.16458 -11.09725 -11.08899 -10.94255 -10.86521 -10.78293 -10.40664 -10.14906 -9.66476 -9.46451 -9.07806 -8.98855 -8.73725 -7.39346 -6.86260 -6.65706 -4.27803 1.73351 2.79821 2.97672 3.13914 3.19819 3.26532 3.74302 4.00975 4.06874 4.44787 4.46536 4.51211 4.70546 4.78981 4.88221 5.03702 5.13779 5.29295 5.31957 5.40069 5.62201 5.67579 5.70647 5.76541 5.82258 6.01495 6.14820 6.26601 6.44101 6.61094 6.79247 6.97235 7.09184 7.15139 7.27555 7.36715 7.72976 7.85311 8.03282 8.16907 8.27597 8.44551 8.72532 8.95248 9.03053 9.08278 10.27147 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.002904 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.337916 B = 9640.598972 C =10695.147781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.084 4.084 4 H 0.084 0.916 5 C -0.150 4.150 6 C 0.035 3.965 7 O -0.124 6.124 8 N -0.621 5.621 9 C 0.714 3.286 10 O -0.546 6.546 11 N -0.672 5.672 12 C 0.170 3.830 13 C -0.261 4.261 14 C -0.092 4.092 15 C -0.172 4.172 16 C 0.120 3.880 17 C -0.457 4.457 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.796 5.796 21 Si 0.909 3.091 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.261 1.261 25 C -0.209 4.209 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.398 0.602 37 H 0.395 0.605 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.279 0.721 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.551 -17.444 5.531 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.104 4.104 4 H 0.102 0.898 5 C -0.208 4.208 6 C -0.043 4.043 7 O -0.128 6.128 8 N -0.327 5.327 9 C 0.415 3.585 10 O -0.418 6.418 11 N -0.322 5.322 12 C 0.079 3.921 13 C -0.283 4.283 14 C -0.111 4.111 15 C -0.192 4.192 16 C 0.117 3.883 17 C -0.486 4.486 18 H 0.097 0.903 19 C -0.142 4.142 20 N -0.422 5.422 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.185 1.185 25 C -0.231 4.231 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.237 0.763 37 H 0.228 0.772 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.090 0.910 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.204 -16.248 5.402 19.439 hybrid contribution 0.261 -0.552 -0.275 0.670 sum -8.942 -16.800 5.127 19.710 Atomic orbital electron populations 1.21803 0.95163 1.01734 1.02358 1.21501 0.96532 0.95040 1.02261 1.21117 0.91712 0.97214 1.00366 0.89760 1.21886 1.01409 1.01569 0.95892 1.23093 0.95765 0.84553 1.00895 1.90588 1.00791 1.24859 1.96513 1.46213 0.95708 1.07616 1.83128 1.15400 0.82416 0.82019 0.78695 1.91002 1.61246 1.34545 1.55056 1.42346 1.03774 1.10182 1.75948 1.17187 0.93513 0.83538 0.97875 1.19987 0.98047 0.99112 1.11167 1.20440 0.97987 0.93565 0.99080 1.21349 0.97771 0.99551 1.00553 1.17491 0.91353 0.90204 0.89248 1.19609 0.95084 1.08896 1.25056 0.90297 1.25902 0.94725 0.99058 0.94495 1.69832 1.07642 1.32760 1.31953 0.86293 0.80672 0.81300 0.78421 1.19365 1.20380 1.18529 1.21035 1.02357 0.94361 1.05364 0.92482 0.92604 0.92198 0.91715 0.91674 0.91468 0.92744 0.92169 0.92241 0.92216 0.76269 0.77171 0.89260 0.88988 0.86290 0.91017 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.16 0.36 -0.57 16 2 C -0.12 -0.74 5.40 -26.73 -0.14 -0.89 16 3 C -0.08 -0.73 2.63 -90.62 -0.24 -0.97 16 4 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 5 C -0.15 -1.38 8.84 37.16 0.33 -1.05 16 6 C 0.03 0.33 5.61 37.16 0.21 0.54 16 7 O -0.12 -1.86 10.64 -29.62 -0.32 -2.17 16 8 N -0.62 -9.02 6.39 27.63 0.18 -8.85 16 9 C 0.71 13.98 8.44 -86.92 -0.73 13.25 16 10 O -0.55 -13.71 14.50 -12.86 -0.19 -13.90 16 11 N -0.67 -12.29 5.34 -14.27 -0.08 -12.36 16 12 C 0.17 3.95 6.25 -83.76 -0.52 3.42 16 13 C -0.26 -5.80 9.97 -39.10 -0.39 -6.18 16 14 C -0.09 -2.16 10.01 -39.69 -0.40 -2.56 16 15 C -0.17 -4.59 8.69 -38.84 -0.34 -4.93 16 16 C 0.12 3.38 5.57 -106.85 -0.59 2.78 16 17 C -0.46 -12.82 9.05 -37.74 -0.34 -13.17 16 18 H 0.08 2.20 7.90 -52.49 -0.41 1.79 16 19 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 20 N -0.80 -21.00 10.94 55.55 0.61 -20.40 16 21 Si 0.91 19.49 29.59 -169.99 -5.03 14.46 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.26 -5.62 7.11 56.52 0.40 -5.21 16 25 C -0.21 -5.60 8.39 -38.68 -0.32 -5.93 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.78 7.82 -51.93 -0.41 0.38 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.40 3.92 8.56 -40.82 -0.35 3.57 16 37 H 0.39 5.32 8.84 -40.82 -0.36 4.96 16 38 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.12 3.24 6.16 -52.49 -0.32 2.92 16 41 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 42 H 0.11 3.01 6.48 -52.49 -0.34 2.67 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -33.39 350.86 -8.99 -42.39 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.24 Total: 9.91 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -3.22 Total: -14.37 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.71 Total: -41.61 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.50 Total: -16.07 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.39 -8.99 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836764182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.768 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds