Wall clock time and date at job start Tue Mar 31 2020 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47293 * 2 1 4 4 H 1.09002 * 109.46742 * 304.99926 * 3 2 1 5 5 C 1.53000 * 109.46966 * 64.99706 * 3 2 1 6 6 C 1.52996 * 109.47426 * 184.99710 * 3 2 1 7 7 O 1.42895 * 109.47390 * 174.99935 * 6 3 2 8 8 N 1.41599 * 114.00222 * 180.02562 * 7 6 3 9 9 C 1.34773 * 120.00047 * 180.02562 * 8 7 6 10 10 O 1.21584 * 120.00200 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00229 * 179.97438 * 9 8 7 12 12 C 1.39948 * 120.00328 * 174.84452 * 11 9 8 13 13 C 1.39290 * 119.94848 * 145.76667 * 12 11 9 14 14 C 1.38485 * 120.42993 * 180.02562 * 13 12 11 15 15 C 1.37683 * 120.32491 * 359.97438 * 14 13 12 16 16 C 1.40743 * 119.88093 * 359.97438 * 15 14 13 17 17 C 1.41403 * 120.20872 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00451 * 205.17793 * 17 16 15 19 19 C 1.39932 * 120.00002 * 25.18375 * 17 16 15 20 20 N 1.30827 * 119.99918 * 16.77791 * 19 17 16 21 21 Si 1.86802 * 119.99986 * 196.78304 * 19 17 16 22 22 H 1.48508 * 109.47174 * 94.96182 * 21 19 17 23 23 H 1.48498 * 109.47129 * 214.96074 * 21 19 17 24 24 H 1.48503 * 109.47144 * 334.96438 * 21 19 17 25 25 C 1.38239 * 119.94818 * 325.50304 * 12 11 9 26 26 H 1.09004 * 109.47033 * 60.00598 * 1 2 3 27 27 H 1.09004 * 109.47189 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47326 * 299.99927 * 1 2 3 29 29 H 1.08998 * 109.47326 * 240.00073 * 2 1 3 30 30 H 1.09004 * 109.47220 * 120.00164 * 2 1 3 31 31 H 1.09004 * 109.47078 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.47211 * 60.00507 * 5 3 2 33 33 H 1.08999 * 109.47254 * 300.00405 * 5 3 2 34 34 H 1.08998 * 109.47429 * 295.00325 * 6 3 2 35 35 H 1.08997 * 109.47058 * 54.99835 * 6 3 2 36 36 H 0.97003 * 119.99861 * 359.97438 * 8 7 6 37 37 H 0.97000 * 119.99430 * 354.85617 * 11 9 8 38 38 H 1.07999 * 119.78090 * 0.02562 * 13 12 11 39 39 H 1.08008 * 119.83964 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.05953 * 179.97438 * 15 14 13 41 41 H 0.97005 * 120.00132 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.15878 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4443 -0.1256 7 8 4.0315 2.7898 -0.2428 8 7 5.4376 2.9031 -0.3657 9 6 6.0080 4.1185 -0.4833 10 8 5.3153 5.1177 -0.4843 11 7 7.3464 4.2264 -0.5999 12 6 7.9302 5.4773 -0.8301 13 6 9.1744 5.7759 -0.2796 14 6 9.7611 7.0107 -0.5006 15 6 9.1204 7.9574 -1.2680 16 6 7.8633 7.6695 -1.8316 17 6 7.1989 8.6369 -2.6205 18 1 6.1232 8.6117 -2.7135 19 6 7.9351 9.6268 -3.2808 20 7 9.2245 9.4811 -3.4477 21 14 7.0770 11.1563 -3.9239 22 1 7.1853 12.2443 -2.9189 23 1 7.7187 11.5879 -5.1916 24 1 5.6447 10.8529 -4.1723 25 6 7.2737 6.4127 -1.6080 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9982 3.1543 1.3072 32 1 2.0698 1.5875 2.1492 33 1 0.5489 2.1252 1.3969 34 1 4.0029 0.9836 0.7597 35 1 3.8571 0.8800 -1.0112 36 1 5.9903 2.1060 -0.3646 37 1 7.9050 3.4370 -0.5243 38 1 9.6848 5.0396 0.3234 39 1 10.7264 7.2320 -0.0695 40 1 9.5816 8.9191 -1.4372 41 1 9.7349 10.1672 -3.9058 42 1 6.3111 6.1804 -2.0391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836764182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:58 Heat of formation + Delta-G solvation = -35.428959 kcal Electronic energy + Delta-G solvation = -22454.234942 eV Core-core repulsion = 19014.116755 eV Total energy + Delta-G solvation = -3440.118187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37087 -39.47065 -38.74556 -36.86905 -36.16077 -34.93354 -33.14475 -31.72858 -30.73864 -29.43487 -27.62872 -27.22377 -24.24457 -23.69036 -22.74770 -21.90354 -20.97928 -19.71810 -19.59272 -18.71006 -17.37734 -17.08201 -16.71424 -16.45896 -16.21319 -15.98918 -15.57036 -15.32659 -14.86033 -14.68323 -14.63923 -14.03270 -13.91430 -13.51699 -13.20796 -13.03587 -12.93690 -12.91625 -12.77126 -12.68425 -12.16601 -12.03262 -12.00774 -11.82153 -11.61540 -11.55037 -11.47046 -11.27986 -10.99616 -10.82160 -10.00939 -9.37175 -8.73207 -8.58412 -6.35099 0.47252 0.96342 1.06584 1.36903 1.50555 1.50982 2.12088 2.22610 2.73727 2.79656 3.54007 3.75648 3.77343 3.81621 4.07092 4.32035 4.33949 4.49655 4.54415 4.60881 4.66995 4.70246 4.78249 4.98929 5.03016 5.08314 5.10559 5.13989 5.15578 5.17659 5.18013 5.34013 5.39628 5.49393 5.56673 5.75862 5.86544 6.06762 6.12298 6.16797 6.37351 6.70265 6.95950 7.01366 7.03210 7.56479 8.34887 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.002904 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.337916 B = 9640.598972 C =10695.147781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.108 4.108 3 C -0.083 4.083 4 H 0.068 0.932 5 C -0.149 4.149 6 C 0.028 3.972 7 O -0.156 6.156 8 N -0.596 5.596 9 C 0.711 3.289 10 O -0.609 6.609 11 N -0.655 5.655 12 C 0.178 3.822 13 C -0.245 4.245 14 C -0.089 4.089 15 C -0.198 4.198 16 C 0.089 3.911 17 C -0.503 4.503 18 H 0.059 0.941 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.981 3.019 22 H -0.259 1.259 23 H -0.260 1.260 24 H -0.267 1.267 25 C -0.239 4.239 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.424 0.576 37 H 0.422 0.578 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.290 0.710 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.674 -19.707 6.434 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C -0.103 4.103 4 H 0.086 0.914 5 C -0.206 4.206 6 C -0.049 4.049 7 O -0.160 6.160 8 N -0.302 5.302 9 C 0.412 3.588 10 O -0.486 6.486 11 N -0.308 5.308 12 C 0.084 3.916 13 C -0.267 4.267 14 C -0.108 4.108 15 C -0.218 4.218 16 C 0.086 3.914 17 C -0.533 4.533 18 H 0.077 0.923 19 C -0.177 4.177 20 N -0.447 5.447 21 Si 0.802 3.198 22 H -0.184 1.184 23 H -0.184 1.184 24 H -0.192 1.192 25 C -0.261 4.261 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.268 0.732 37 H 0.261 0.739 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.290 -18.634 6.319 21.351 hybrid contribution -0.032 -0.073 -0.464 0.471 sum -8.322 -18.707 5.855 21.295 Atomic orbital electron populations 1.21823 0.94958 1.02411 1.02047 1.21468 0.96632 0.93166 1.03323 1.21165 0.91106 0.98706 0.99344 0.91373 1.21870 1.02157 0.99802 0.96777 1.23443 0.96159 0.82476 1.02795 1.90612 1.00221 1.28499 1.96689 1.45714 0.96489 1.06951 1.81077 1.15560 0.82395 0.82580 0.78251 1.90976 1.62708 1.37245 1.57679 1.41996 1.03835 1.09706 1.75262 1.17233 0.93622 0.84493 0.96202 1.20448 0.97123 0.99362 1.09734 1.20847 0.99015 0.93295 0.97619 1.21321 0.97813 1.00172 1.02445 1.17826 0.92555 0.90936 0.90104 1.19727 0.94472 1.11461 1.27600 0.92268 1.26670 0.95437 1.01435 0.94110 1.69850 1.08699 1.33917 1.32195 0.85223 0.79009 0.77076 0.78529 1.18362 1.18435 1.19168 1.20970 1.01958 0.95506 1.07652 0.93092 0.91413 0.92302 0.90798 0.90408 0.94709 0.91552 0.91119 0.90066 0.90312 0.73186 0.73914 0.84469 0.85502 0.87666 0.89974 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.67 71.98 0.70 -0.90 16 2 C -0.11 -1.13 5.40 30.59 0.17 -0.97 16 3 C -0.08 -1.35 2.63 -10.80 -0.03 -1.38 16 4 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 5 C -0.15 -2.65 8.84 71.98 0.64 -2.01 16 6 C 0.03 0.48 5.61 71.98 0.40 0.89 16 7 O -0.16 -4.59 10.64 -21.43 -0.23 -4.81 16 8 N -0.60 -16.46 6.39 -184.75 -1.18 -17.64 16 9 C 0.71 27.72 8.44 179.05 1.51 29.23 16 10 O -0.61 -31.82 14.50 13.37 0.19 -31.63 16 11 N -0.66 -22.91 5.34 -317.33 -1.70 -24.60 16 12 C 0.18 8.12 6.25 38.10 0.24 8.36 16 13 C -0.25 -10.18 9.97 22.58 0.23 -9.96 16 14 C -0.09 -4.04 10.01 22.20 0.22 -3.82 16 15 C -0.20 -10.75 8.69 22.75 0.20 -10.55 16 16 C 0.09 5.23 5.57 -21.31 -0.12 5.11 16 17 C -0.50 -30.06 9.05 23.46 0.21 -29.85 16 18 H 0.06 3.60 7.90 -2.91 -0.02 3.58 16 19 C 0.04 2.06 5.16 85.25 0.44 2.50 16 20 N -0.82 -44.34 10.94 21.82 0.24 -44.10 16 21 Si 0.98 41.10 29.59 68.60 2.03 43.13 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 23 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 C -0.24 -13.36 8.39 22.85 0.19 -13.17 16 26 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.61 6.56 -2.39 -0.02 0.60 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.03 0.84 7.82 -2.39 -0.02 0.82 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.07 6.56 -2.39 -0.02 1.06 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 36 H 0.42 7.08 8.56 -92.71 -0.79 6.28 16 37 H 0.42 9.90 8.84 -92.71 -0.82 9.08 16 38 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 39 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 40 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16 41 H 0.29 13.97 8.30 -92.70 -0.77 13.20 16 42 H 0.08 4.83 6.48 -2.91 -0.02 4.81 16 Total: -1.00 -78.34 350.86 3.78 -74.57 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.57 Total: 31.60 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 4.99 Total: -26.51 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -2.64 Total: -86.35 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.03 Total: -36.44 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -78.34 3.78 -74.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836764182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.140 kcal (2) G-P(sol) polarization free energy of solvation -78.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds