Wall clock time and date at job start Tue Mar 31 2020 06:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34754 * 116.99713 * 89.99667 * 13 3 2 15 15 O 1.21523 * 120.00520 * 0.02562 * 14 13 3 16 16 C 1.47288 * 119.99384 * 180.02562 * 14 13 3 17 17 C 1.38123 * 126.43201 * 0.02562 * 16 14 13 18 18 N 1.34225 * 107.41022 * 179.97438 * 17 16 14 19 19 C 1.46499 * 125.74259 * 180.02562 * 18 17 16 20 20 N 1.39932 * 108.51203 * 359.97438 * 18 17 16 21 21 C 1.30430 * 108.91606 * 359.73651 * 20 18 17 22 22 C 1.50704 * 125.98765 * 180.23847 * 21 20 18 23 23 C 1.53783 * 113.61346 * 39.33945 * 22 21 20 24 24 C 1.53963 * 87.01603 * 220.04538 * 23 22 21 25 25 C 1.53776 * 113.61521 * 301.72926 * 22 21 20 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 32 32 H 1.08004 * 126.29401 * 359.97438 * 17 16 14 33 33 H 1.09001 * 109.47274 * 89.99928 * 19 18 17 34 34 H 1.08999 * 109.47126 * 210.00217 * 19 18 17 35 35 H 1.09002 * 109.47023 * 329.99866 * 19 18 17 36 36 H 1.09002 * 112.84642 * 170.52928 * 22 21 20 37 37 H 1.08995 * 113.61506 * 334.56144 * 23 22 21 38 38 H 1.08998 * 113.61754 * 105.47119 * 23 22 21 39 39 H 1.09001 * 113.53180 * 270.81195 * 24 23 22 40 40 H 1.08998 * 113.74357 * 139.94657 * 24 23 22 41 41 H 1.09006 * 113.61135 * 254.52545 * 25 22 21 42 42 H 1.08993 * 113.61670 * 25.43371 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 8 1.6559 2.0917 -1.2407 14 6 0.4681 2.7279 -1.2559 15 8 -0.2274 2.7403 -0.2595 16 6 0.0130 3.4084 -2.4803 17 6 0.6921 3.4774 -3.6811 18 7 -0.0674 4.1852 -4.5319 19 6 0.2717 4.5017 -5.9215 20 7 -1.2382 4.5688 -3.8685 21 6 -1.2040 4.1072 -2.6491 22 6 -2.2724 4.2908 -1.6023 23 6 -3.7029 4.1871 -2.1574 24 6 -4.0635 5.3575 -1.2244 25 6 -2.5820 5.7643 -1.2898 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0605 2.9503 32 1 1.6568 3.0420 -3.8960 33 1 -0.1040 3.7148 -6.5755 34 1 -0.1829 5.4527 -6.1989 35 1 1.3546 4.5730 -6.0240 36 1 -2.1036 3.6821 -0.7140 37 1 -3.7792 4.4335 -3.2164 38 1 -4.2039 3.2535 -1.9017 39 1 -4.3858 5.0402 -0.2326 40 1 -4.7369 6.0866 -1.6751 41 1 -2.1793 6.1020 -0.3348 42 1 -2.3513 6.4426 -2.1112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842343057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:22 Heat of formation + Delta-G solvation = -1.432539 kcal Electronic energy + Delta-G solvation = -23851.263816 eV Core-core repulsion = 20412.619825 eV Total energy + Delta-G solvation = -3438.643991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35454 -39.04556 -38.34732 -35.55787 -33.42163 -33.24293 -31.34553 -30.28443 -27.88328 -27.19467 -25.49329 -25.20005 -23.35313 -22.39517 -21.05297 -20.07656 -19.30800 -18.69424 -17.39479 -16.41231 -16.27551 -15.70977 -15.43628 -15.06876 -14.90793 -14.86019 -14.38005 -13.31932 -13.16332 -13.11967 -12.76307 -12.70152 -12.37071 -12.34150 -12.06028 -11.87746 -11.38674 -11.28691 -11.13706 -10.98488 -10.90283 -10.63295 -10.59000 -10.39003 -10.24923 -10.21005 -9.70943 -9.40576 -9.25882 -9.21192 -8.73890 -8.52406 -8.39043 -6.14463 -4.21289 1.65971 2.27814 2.35743 3.27575 3.31423 3.33554 3.86085 3.89470 4.32398 4.42533 4.66994 4.77123 4.80774 4.91342 4.94503 5.10020 5.17287 5.17830 5.20544 5.49669 5.69866 5.77822 5.86146 5.96457 5.99628 6.08132 6.08914 6.30591 6.31742 6.38848 6.50983 6.56142 6.68238 6.87589 6.96574 7.06351 7.25182 7.35837 7.66356 7.69345 7.80898 8.03984 8.22520 8.74219 9.00566 9.43839 10.92247 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018065 B = 0.004368 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.611486 B = 6407.998058 C = 7243.548004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.048 0.952 5 C -0.521 4.521 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.357 6.357 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.266 4.266 17 C 0.120 3.880 18 N -0.369 5.369 19 C 0.100 3.900 20 N -0.304 5.304 21 C 0.146 3.854 22 C -0.044 4.044 23 C -0.129 4.129 24 C -0.140 4.140 25 C -0.126 4.126 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.107 0.893 30 H 0.040 0.960 31 H 0.266 0.734 32 H 0.191 0.809 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.990 7.519 -12.921 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.559 4.559 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.273 6.273 14 C 0.376 3.624 15 O -0.411 6.411 16 C -0.278 4.278 17 C -0.030 4.030 18 N -0.148 5.148 19 C -0.041 4.041 20 N -0.125 5.125 21 C -0.021 4.021 22 C -0.064 4.064 23 C -0.167 4.167 24 C -0.177 4.177 25 C -0.164 4.164 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.125 0.875 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.208 0.792 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.151 0.849 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.748 8.094 -13.458 18.484 hybrid contribution 1.618 -0.632 0.615 1.842 sum -8.130 7.462 -12.843 16.933 Atomic orbital electron populations 1.21854 0.98321 0.98852 1.00927 1.22006 0.92707 0.99422 1.03165 1.20620 0.94765 0.88685 0.78795 0.93452 1.21003 0.89796 1.38897 1.06179 0.91518 1.24867 0.99058 0.94843 0.95109 1.69884 1.35376 1.37833 1.09430 0.86371 0.84115 0.78421 0.77433 1.20049 1.21059 1.20022 1.86510 1.33964 1.62810 1.44032 1.19815 0.80543 0.75956 0.86046 1.90703 1.55647 1.59664 1.35052 1.19702 0.98875 1.14511 0.94746 1.23305 0.97371 0.93088 0.89255 1.48260 1.14586 1.40656 1.11265 1.21931 1.02161 1.03072 0.76934 1.77026 1.03621 1.24795 1.07033 1.22201 0.94135 0.93323 0.92408 1.21436 0.89924 0.98940 0.96106 1.22974 0.95026 0.98861 0.99821 1.22823 0.96488 0.98246 1.00139 1.22897 0.96086 0.95293 1.02115 0.94776 0.92758 0.95026 0.87460 0.94156 0.92388 0.79170 0.90457 0.89143 0.89074 0.84941 0.89745 0.91312 0.89953 0.91505 0.91024 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.56 37.16 0.32 -2.86 16 2 C -0.14 -3.38 5.49 -26.74 -0.15 -3.52 16 3 C 0.22 5.96 2.25 -27.89 -0.06 5.90 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.50 8.90 -34.44 -0.31 -14.80 16 6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.03 11.29 55.43 0.63 -24.40 16 9 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 O -0.36 -8.53 9.63 -40.64 -0.39 -8.92 16 14 C 0.53 11.65 6.40 34.41 0.22 11.87 16 15 O -0.52 -12.19 11.89 -19.28 -0.23 -12.42 16 16 C -0.27 -4.82 6.13 -105.08 -0.64 -5.46 16 17 C 0.12 1.75 11.33 -16.55 -0.19 1.56 16 18 N -0.37 -4.75 3.98 -67.58 -0.27 -5.02 16 19 C 0.10 0.73 11.44 59.85 0.68 1.42 16 20 N -0.30 -4.61 12.13 33.90 0.41 -4.20 16 21 C 0.15 2.43 6.31 -82.01 -0.52 1.92 16 22 C -0.04 -0.67 3.96 -90.96 -0.36 -1.03 16 23 C -0.13 -1.61 7.63 -25.82 -0.20 -1.80 16 24 C -0.14 -1.53 8.09 -25.82 -0.21 -1.74 16 25 C -0.13 -1.62 7.63 -25.92 -0.20 -1.82 16 26 H 0.03 0.74 6.06 -51.93 -0.31 0.43 16 27 H 0.05 1.26 7.79 -51.93 -0.40 0.86 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 32 H 0.19 2.28 8.06 -52.48 -0.42 1.85 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.13 2.29 6.00 -51.93 -0.31 1.98 16 37 H 0.08 1.06 7.80 -51.93 -0.40 0.65 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -31.94 345.51 -7.68 -39.61 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.31 Total: 2.96 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -1.70 Total: -8.75 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.77 Total: -33.62 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.62 Total: -21.33 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.94 -7.68 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842343057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.179 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds