Wall clock time and date at job start Tue Mar 31 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34754 * 116.99713 * 89.99667 * 13 3 2 15 15 O 1.21523 * 120.00520 * 0.02562 * 14 13 3 16 16 C 1.47288 * 119.99384 * 180.02562 * 14 13 3 17 17 C 1.38123 * 126.43201 * 0.02562 * 16 14 13 18 18 N 1.34225 * 107.41022 * 179.97438 * 17 16 14 19 19 C 1.46499 * 125.74259 * 180.02562 * 18 17 16 20 20 N 1.39932 * 108.51203 * 359.97438 * 18 17 16 21 21 C 1.30430 * 108.91606 * 359.73651 * 20 18 17 22 22 C 1.50704 * 125.98765 * 180.23847 * 21 20 18 23 23 C 1.53783 * 113.61346 * 39.33945 * 22 21 20 24 24 C 1.53963 * 87.01603 * 220.04538 * 23 22 21 25 25 C 1.53776 * 113.61521 * 301.72926 * 22 21 20 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 32 32 H 1.08004 * 126.29401 * 359.97438 * 17 16 14 33 33 H 1.09001 * 109.47274 * 89.99928 * 19 18 17 34 34 H 1.08999 * 109.47126 * 210.00217 * 19 18 17 35 35 H 1.09002 * 109.47023 * 329.99866 * 19 18 17 36 36 H 1.09002 * 112.84642 * 170.52928 * 22 21 20 37 37 H 1.08995 * 113.61506 * 334.56144 * 23 22 21 38 38 H 1.08998 * 113.61754 * 105.47119 * 23 22 21 39 39 H 1.09001 * 113.53180 * 270.81195 * 24 23 22 40 40 H 1.08998 * 113.74357 * 139.94657 * 24 23 22 41 41 H 1.09006 * 113.61135 * 254.52545 * 25 22 21 42 42 H 1.08993 * 113.61670 * 25.43371 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 8 1.6559 2.0917 -1.2407 14 6 0.4681 2.7279 -1.2559 15 8 -0.2274 2.7403 -0.2595 16 6 0.0130 3.4084 -2.4803 17 6 0.6921 3.4774 -3.6811 18 7 -0.0674 4.1852 -4.5319 19 6 0.2717 4.5017 -5.9215 20 7 -1.2382 4.5688 -3.8685 21 6 -1.2040 4.1072 -2.6491 22 6 -2.2724 4.2908 -1.6023 23 6 -3.7029 4.1871 -2.1574 24 6 -4.0635 5.3575 -1.2244 25 6 -2.5820 5.7643 -1.2898 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0605 2.9503 32 1 1.6568 3.0420 -3.8960 33 1 -0.1040 3.7148 -6.5755 34 1 -0.1829 5.4527 -6.1989 35 1 1.3546 4.5730 -6.0240 36 1 -2.1036 3.6821 -0.7140 37 1 -3.7792 4.4335 -3.2164 38 1 -4.2039 3.2535 -1.9017 39 1 -4.3858 5.0402 -0.2326 40 1 -4.7369 6.0866 -1.6751 41 1 -2.1793 6.1020 -0.3348 42 1 -2.3513 6.4426 -2.1112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842343057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:21 Heat of formation + Delta-G solvation = -19.176919 kcal Electronic energy + Delta-G solvation = -23852.033270 eV Core-core repulsion = 20412.619825 eV Total energy + Delta-G solvation = -3439.413445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.55337 -40.81524 -39.38687 -37.41252 -35.42060 -34.26001 -33.33071 -31.58241 -29.26767 -28.75510 -26.51138 -26.38801 -25.20117 -23.85875 -22.39395 -21.61465 -20.91913 -19.80882 -19.02039 -18.29238 -17.81648 -17.07753 -16.83339 -16.40853 -16.31947 -16.14481 -15.87353 -14.89353 -14.73793 -14.29590 -14.11223 -13.81293 -13.65469 -13.36000 -13.35237 -13.30297 -13.20465 -13.07076 -12.88205 -12.75732 -12.52616 -12.18002 -12.09170 -11.73183 -11.63582 -11.48115 -11.38965 -11.31109 -10.90683 -10.76026 -10.48010 -10.32625 -9.74801 -8.23208 -6.39896 0.40917 0.96737 1.37873 1.44080 1.47344 1.55433 2.17934 2.28480 2.49654 3.06399 3.29781 3.58367 3.80101 3.82810 3.93892 4.04162 4.23843 4.31544 4.41541 4.43921 4.44236 4.50181 4.56279 4.68669 4.71474 4.79148 4.84778 4.89191 4.93745 5.05856 5.07696 5.12752 5.26477 5.27003 5.33126 5.45340 5.54754 5.61854 5.72060 5.86145 6.03824 6.20181 6.49956 6.65979 7.13570 7.33340 8.83482 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018065 B = 0.004368 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.611486 B = 6407.998058 C = 7243.548004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.229 3.771 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.263 1.263 13 O -0.361 6.361 14 C 0.527 3.473 15 O -0.546 6.546 16 C -0.311 4.311 17 C 0.141 3.859 18 N -0.355 5.355 19 C 0.086 3.914 20 N -0.308 5.308 21 C 0.140 3.860 22 C -0.062 4.062 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.123 4.123 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.270 0.730 32 H 0.218 0.782 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 8.074 -15.297 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.175 3.825 4 H 0.023 0.977 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.187 1.187 13 O -0.277 6.277 14 C 0.374 3.626 15 O -0.439 6.439 16 C -0.324 4.324 17 C -0.013 4.013 18 N -0.132 5.132 19 C -0.052 4.052 20 N -0.129 5.129 21 C -0.027 4.027 22 C -0.082 4.082 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.161 4.161 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.234 0.766 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.139 0.861 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.360 8.672 -15.881 20.373 hybrid contribution 1.466 -0.750 1.242 2.063 sum -7.894 7.922 -14.639 18.423 Atomic orbital electron populations 1.21690 0.96461 1.00324 1.00039 1.21853 0.94300 0.98221 1.02236 1.20318 0.94420 0.89112 0.78631 0.97749 1.21306 0.90472 1.39890 1.06940 0.91465 1.25790 1.04119 0.93926 0.94363 1.70017 1.37466 1.37975 1.09822 0.85280 0.77825 0.78698 0.77880 1.19489 1.20381 1.18746 1.86484 1.35396 1.63395 1.42461 1.20453 0.79486 0.75431 0.87230 1.90685 1.56055 1.60692 1.36469 1.19636 1.00886 1.17197 0.94684 1.23603 0.97718 0.91817 0.88159 1.48750 1.13187 1.38612 1.12648 1.22478 1.04444 1.04391 0.73894 1.76989 1.04769 1.24839 1.06342 1.22359 0.93960 0.93223 0.93156 1.21465 0.91394 1.00055 0.95284 1.22933 0.92980 0.99728 1.00179 1.22783 0.95410 0.97767 1.00251 1.22889 0.97633 0.93834 1.01779 0.94748 0.94537 0.92201 0.89580 0.93600 0.92114 0.76564 0.88429 0.87946 0.86117 0.87940 0.89418 0.91067 0.89417 0.89249 0.91710 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.56 71.98 0.62 -5.23 16 2 C -0.13 -6.59 5.49 30.59 0.17 -6.42 16 3 C 0.23 12.68 2.25 29.85 0.07 12.75 16 4 H 0.00 0.29 7.16 -2.39 -0.02 0.28 16 5 C -0.55 -31.23 8.90 25.60 0.23 -31.00 16 6 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 7 C 0.02 0.98 5.29 84.65 0.45 1.43 16 8 N -0.91 -52.76 11.29 21.45 0.24 -52.52 16 9 Si 0.98 42.81 29.54 68.60 2.03 44.83 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 13 O -0.36 -17.81 9.63 -56.64 -0.55 -18.36 16 14 C 0.53 24.08 6.40 70.20 0.45 24.53 16 15 O -0.55 -27.32 11.89 19.76 0.23 -27.08 16 16 C -0.31 -11.41 6.13 -20.16 -0.12 -11.53 16 17 C 0.14 3.85 11.33 84.30 0.96 4.81 16 18 N -0.36 -8.23 3.98 -367.73 -1.46 -9.69 16 19 C 0.09 0.93 11.44 127.77 1.46 2.39 16 20 N -0.31 -8.90 12.13 -46.65 -0.57 -9.47 16 21 C 0.14 4.66 6.31 43.53 0.27 4.94 16 22 C -0.06 -1.92 3.96 -11.01 -0.04 -1.96 16 23 C -0.12 -2.92 7.63 31.18 0.24 -2.68 16 24 C -0.12 -2.59 8.09 31.18 0.25 -2.33 16 25 C -0.12 -3.17 7.63 31.12 0.24 -2.94 16 26 H 0.03 1.54 6.06 -2.39 -0.01 1.52 16 27 H 0.04 1.76 7.79 -2.39 -0.02 1.74 16 28 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.09 4.81 5.95 -2.39 -0.01 4.80 16 30 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.22 4.64 8.06 -2.91 -0.02 4.61 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.10 3.81 6.00 -2.39 -0.01 3.79 16 37 H 0.09 2.07 7.80 -2.39 -0.02 2.05 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 Total: -1.00 -72.10 345.51 6.17 -65.93 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 1.01 Total: 19.63 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 5.23 Total: -13.27 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.79 Total: -71.68 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -0.31 Total: -45.44 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -72.10 6.17 -65.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842343057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.753 kcal (2) G-P(sol) polarization free energy of solvation -72.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds