Wall clock time and date at job start Tue Mar 31 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47147 * 2 1 4 4 H 1.09001 * 109.47338 * 62.30329 * 3 2 1 5 5 C 1.50699 * 109.47413 * 182.30501 * 3 2 1 6 6 H 1.07997 * 120.00352 * 114.36204 * 5 3 2 7 7 C 1.37887 * 119.99659 * 294.36561 * 5 3 2 8 8 N 1.31510 * 119.99841 * 153.73971 * 7 5 3 9 9 Si 1.86797 * 120.00097 * 333.74382 * 7 5 3 10 10 H 1.48495 * 109.47113 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47473 * 59.99739 * 9 7 5 12 12 H 1.48508 * 109.46894 * 300.00240 * 9 7 5 13 13 O 1.45200 * 109.47162 * 302.30666 * 3 2 1 14 14 C 1.34866 * 117.00198 * 89.99805 * 13 3 2 15 15 O 1.21608 * 120.00453 * 359.97438 * 14 13 3 16 16 C 1.46589 * 120.00184 * 180.02562 * 14 13 3 17 17 C 1.36923 * 126.92032 * 352.22419 * 16 14 13 18 18 N 1.33419 * 107.82438 * 179.85815 * 17 16 14 19 19 C 1.30581 * 109.70152 * 0.45927 * 18 17 16 20 20 N 1.34855 * 109.00698 * 359.67974 * 19 18 17 21 21 C 1.46442 * 125.00274 * 180.09131 * 20 19 18 22 22 H 1.09000 * 109.57680 * 257.11419 * 21 20 19 23 23 C 1.52998 * 109.57962 * 136.84672 * 21 20 19 24 24 C 1.53264 * 108.81860 * 17.04499 * 21 20 19 25 25 C 1.53168 * 109.43873 * 309.78137 * 24 21 20 26 26 C 1.51117 * 127.07898 * 179.65162 * 19 18 17 27 27 H 1.08994 * 109.46728 * 299.99796 * 1 2 3 28 28 H 1.09001 * 109.47164 * 60.00114 * 1 2 3 29 29 H 1.08998 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46757 * 239.99878 * 2 1 3 31 31 H 1.09003 * 109.47300 * 120.00408 * 2 1 3 32 32 H 0.97007 * 120.00001 * 354.97461 * 8 7 5 33 33 H 1.07997 * 126.09326 * 0.02562 * 17 16 14 34 34 H 1.09001 * 109.47101 * 94.75101 * 23 21 20 35 35 H 1.08994 * 109.46986 * 214.75413 * 23 21 20 36 36 H 1.08997 * 109.46648 * 334.75259 * 23 21 20 37 37 H 1.08994 * 109.47504 * 69.77495 * 24 21 20 38 38 H 1.09001 * 109.47620 * 189.79510 * 24 21 20 39 39 H 1.08999 * 109.50746 * 189.25260 * 25 24 21 40 40 H 1.08994 * 109.51129 * 309.40506 * 25 24 21 41 41 H 1.08993 * 109.70736 * 76.37063 * 26 19 18 42 42 H 1.08997 * 109.70702 * 315.74609 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7109 1.9443 0.9099 5 6 3.5460 1.4429 -0.0571 6 1 4.0534 1.8403 -0.9237 7 6 4.2760 0.9359 0.9970 8 7 5.4825 0.4551 0.7904 9 14 3.5512 0.9320 2.7187 10 1 4.5289 0.3388 3.6659 11 1 2.3022 0.1289 2.7282 12 1 3.2465 2.3258 3.1307 13 8 1.5116 2.1427 -1.1570 14 6 0.3312 2.7765 -1.0028 15 8 -0.2408 2.7441 0.0699 16 6 -0.2630 3.5036 -2.1284 17 6 0.3174 3.7565 -3.3425 18 7 -0.5592 4.4409 -4.0796 19 6 -1.6518 4.6395 -3.3926 20 7 -1.5142 4.0749 -2.1757 21 6 -2.5329 4.0875 -1.1238 22 1 -2.2698 4.8289 -0.3694 23 6 -2.6177 2.7042 -0.4755 24 6 -3.8855 4.4451 -1.7496 25 6 -3.7333 5.7057 -2.6063 26 6 -2.8915 5.3757 -3.8452 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8304 0.3898 -0.1128 33 1 1.3073 3.4533 -3.6500 34 1 -1.9891 2.6810 0.4147 35 1 -3.6506 2.4964 -0.1965 36 1 -2.2737 1.9498 -1.1830 37 1 -4.2263 3.6199 -2.3747 38 1 -4.6143 4.6282 -0.9600 39 1 -4.7177 6.0553 -2.9175 40 1 -3.2370 6.4830 -2.0253 41 1 -3.4666 4.7450 -4.5230 42 1 -2.6069 6.2975 -4.3524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845529425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:52 Heat of formation + Delta-G solvation = -34.241548 kcal Electronic energy + Delta-G solvation = -24602.126368 eV Core-core repulsion = 21162.059672 eV Total energy + Delta-G solvation = -3440.066697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.48968 -39.54874 -37.25172 -36.05317 -33.75820 -33.54508 -31.93939 -30.79299 -29.59454 -27.73223 -26.99743 -23.76840 -23.00620 -22.49026 -22.03760 -20.79453 -19.64719 -19.05075 -18.00538 -17.23080 -16.59064 -16.01351 -15.51855 -15.28866 -14.84725 -14.55395 -14.43952 -13.85013 -13.55415 -13.31909 -13.15684 -12.85484 -12.79509 -12.57098 -12.36129 -12.16516 -11.74333 -11.58055 -11.45300 -11.39682 -11.33850 -10.95202 -10.82203 -10.57038 -10.19603 -10.03847 -9.92556 -9.66523 -9.61693 -9.50198 -8.98591 -8.38274 -8.29475 -6.69526 -4.24747 1.37028 2.41456 2.86250 3.31539 3.38663 3.50436 3.52242 3.58184 4.05614 4.23589 4.35645 4.36937 4.39567 4.90472 4.97413 5.00181 5.04433 5.17962 5.32930 5.35508 5.40234 5.45100 5.47090 5.64905 5.69552 5.76060 5.84199 5.91266 5.93747 6.00969 6.20742 6.31797 6.45149 6.59768 6.63973 6.73553 6.81662 7.07441 7.17748 7.37498 7.82539 7.96225 8.23901 8.46336 8.83377 9.38639 10.71073 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026661 B = 0.004601 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.982254 B = 6084.580386 C = 6597.864688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C 0.209 3.791 4 H 0.038 0.962 5 C -0.619 4.619 6 H 0.071 0.929 7 C 0.050 3.950 8 N -0.880 5.880 9 Si 1.026 2.974 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.279 1.279 13 O -0.330 6.330 14 C 0.533 3.467 15 O -0.519 6.519 16 C -0.065 4.065 17 C 0.061 3.939 18 N -0.497 5.497 19 C 0.226 3.774 20 N -0.419 5.419 21 C 0.133 3.867 22 H 0.094 0.906 23 C -0.172 4.172 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.034 4.034 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.275 0.725 33 H 0.187 0.813 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.077 7.588 -5.194 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.155 3.845 4 H 0.055 0.945 5 C -0.656 4.656 6 H 0.089 0.911 7 C -0.158 4.158 8 N -0.512 5.512 9 Si 0.852 3.148 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.205 1.205 13 O -0.244 6.244 14 C 0.378 3.622 15 O -0.412 6.412 16 C -0.179 4.179 17 C -0.093 4.093 18 N -0.216 5.216 19 C -0.035 4.035 20 N -0.102 5.102 21 C 0.031 3.969 22 H 0.112 0.888 23 C -0.229 4.229 24 C -0.169 4.169 25 C -0.166 4.166 26 C -0.073 4.073 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.204 0.796 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.798 7.414 -3.921 21.501 hybrid contribution -0.358 -0.009 -0.709 0.794 sum -20.156 7.405 -4.629 21.967 Atomic orbital electron populations 1.21944 0.97664 0.99951 1.01182 1.22311 0.93604 0.99313 1.02620 1.20935 0.94268 0.87060 0.82224 0.94463 1.21824 0.88167 1.47759 1.07860 0.91073 1.25574 0.94996 0.91814 1.03398 1.70853 1.18534 1.36271 1.25514 0.84292 0.76248 0.77696 0.76551 1.20377 1.19995 1.20499 1.86625 1.32324 1.60868 1.44599 1.19367 0.80777 0.76460 0.85570 1.90646 1.61083 1.61170 1.28302 1.19700 0.88593 1.10897 0.98676 1.22926 0.99782 0.97691 0.88922 1.69978 1.00797 1.19067 1.31776 1.23448 0.97669 1.00037 0.82374 1.45346 1.11937 1.39458 1.13447 1.21698 0.86051 1.00982 0.88163 0.88761 1.22630 1.02688 0.93422 1.04167 1.22076 0.95545 0.98744 1.00563 1.21733 1.00919 0.97828 0.96131 1.20269 0.89222 0.99846 0.97924 0.92395 0.94230 0.94050 0.91861 0.90900 0.91499 0.79601 0.86962 0.91944 0.92347 0.90511 0.89121 0.89769 0.90972 0.88973 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.50 37.16 0.32 -2.57 16 2 C -0.14 -3.16 5.43 -26.73 -0.15 -3.31 16 3 C 0.21 5.19 1.93 -27.88 -0.05 5.14 16 4 H 0.04 0.96 5.71 -51.93 -0.30 0.66 16 5 C -0.62 -17.48 9.08 -34.44 -0.31 -17.79 16 6 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 7 C 0.05 1.42 5.23 -17.82 -0.09 1.33 16 8 N -0.88 -26.10 13.70 55.43 0.76 -25.34 16 9 Si 1.03 24.56 26.63 -169.99 -4.53 20.03 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.11 6.14 56.52 0.35 -5.76 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 O -0.33 -7.66 9.54 -40.94 -0.39 -8.05 16 14 C 0.53 10.89 5.69 34.10 0.19 11.09 16 15 O -0.52 -10.62 9.39 -19.35 -0.18 -10.80 16 16 C -0.06 -1.16 6.46 -82.37 -0.53 -1.69 16 17 C 0.06 1.05 11.72 -17.34 -0.20 0.84 16 18 N -0.50 -8.10 11.19 -10.34 -0.12 -8.22 16 19 C 0.23 3.12 7.63 -155.31 -1.19 1.94 16 20 N -0.42 -6.19 2.94 -102.75 -0.30 -6.49 16 21 C 0.13 1.58 3.32 -67.83 -0.23 1.35 16 22 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 23 C -0.17 -2.22 7.94 37.16 0.30 -1.92 16 24 C -0.13 -1.03 5.05 -26.51 -0.13 -1.16 16 25 C -0.13 -0.87 5.96 -26.45 -0.16 -1.03 16 26 C -0.03 -0.29 6.33 -27.48 -0.17 -0.47 16 27 H 0.06 1.12 7.35 -51.93 -0.38 0.73 16 28 H 0.04 0.75 6.21 -51.93 -0.32 0.43 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.07 1.66 5.72 -51.93 -0.30 1.37 16 32 H 0.27 8.08 8.73 -40.82 -0.36 7.73 16 33 H 0.19 3.02 8.06 -52.49 -0.42 2.59 16 34 H 0.11 1.73 5.33 -52.10 -0.28 1.45 16 35 H 0.06 0.62 7.79 -51.93 -0.40 0.22 16 36 H 0.06 0.87 7.46 -51.93 -0.39 0.48 16 37 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -31.47 327.65 -8.45 -39.93 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.22 Total: 2.27 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.41 Total: -8.26 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.34 Total: -40.05 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.57 Total: -18.85 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -4.53 Total: 20.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.47 -8.45 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845529425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.686 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds