Wall clock time and date at job start Tue Mar 31 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47147 * 2 1 4 4 H 1.09001 * 109.47338 * 62.30329 * 3 2 1 5 5 C 1.50699 * 109.47413 * 182.30501 * 3 2 1 6 6 H 1.07997 * 120.00352 * 114.36204 * 5 3 2 7 7 C 1.37887 * 119.99659 * 294.36561 * 5 3 2 8 8 N 1.31510 * 119.99841 * 153.73971 * 7 5 3 9 9 Si 1.86797 * 120.00097 * 333.74382 * 7 5 3 10 10 H 1.48495 * 109.47113 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47473 * 59.99739 * 9 7 5 12 12 H 1.48508 * 109.46894 * 300.00240 * 9 7 5 13 13 O 1.45200 * 109.47162 * 302.30666 * 3 2 1 14 14 C 1.34866 * 117.00198 * 89.99805 * 13 3 2 15 15 O 1.21608 * 120.00453 * 359.97438 * 14 13 3 16 16 C 1.46589 * 120.00184 * 180.02562 * 14 13 3 17 17 C 1.36923 * 126.92032 * 352.22419 * 16 14 13 18 18 N 1.33419 * 107.82438 * 179.85815 * 17 16 14 19 19 C 1.30581 * 109.70152 * 0.45927 * 18 17 16 20 20 N 1.34855 * 109.00698 * 359.67974 * 19 18 17 21 21 C 1.46442 * 125.00274 * 180.09131 * 20 19 18 22 22 H 1.09000 * 109.57680 * 257.11419 * 21 20 19 23 23 C 1.52998 * 109.57962 * 136.84672 * 21 20 19 24 24 C 1.53264 * 108.81860 * 17.04499 * 21 20 19 25 25 C 1.53168 * 109.43873 * 309.78137 * 24 21 20 26 26 C 1.51117 * 127.07898 * 179.65162 * 19 18 17 27 27 H 1.08994 * 109.46728 * 299.99796 * 1 2 3 28 28 H 1.09001 * 109.47164 * 60.00114 * 1 2 3 29 29 H 1.08998 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46757 * 239.99878 * 2 1 3 31 31 H 1.09003 * 109.47300 * 120.00408 * 2 1 3 32 32 H 0.97007 * 120.00001 * 354.97461 * 8 7 5 33 33 H 1.07997 * 126.09326 * 0.02562 * 17 16 14 34 34 H 1.09001 * 109.47101 * 94.75101 * 23 21 20 35 35 H 1.08994 * 109.46986 * 214.75413 * 23 21 20 36 36 H 1.08997 * 109.46648 * 334.75259 * 23 21 20 37 37 H 1.08994 * 109.47504 * 69.77495 * 24 21 20 38 38 H 1.09001 * 109.47620 * 189.79510 * 24 21 20 39 39 H 1.08999 * 109.50746 * 189.25260 * 25 24 21 40 40 H 1.08994 * 109.51129 * 309.40506 * 25 24 21 41 41 H 1.08993 * 109.70736 * 76.37063 * 26 19 18 42 42 H 1.08997 * 109.70702 * 315.74609 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7109 1.9443 0.9099 5 6 3.5460 1.4429 -0.0571 6 1 4.0534 1.8403 -0.9237 7 6 4.2760 0.9359 0.9970 8 7 5.4825 0.4551 0.7904 9 14 3.5512 0.9320 2.7187 10 1 4.5289 0.3388 3.6659 11 1 2.3022 0.1289 2.7282 12 1 3.2465 2.3258 3.1307 13 8 1.5116 2.1427 -1.1570 14 6 0.3312 2.7765 -1.0028 15 8 -0.2408 2.7441 0.0699 16 6 -0.2630 3.5036 -2.1284 17 6 0.3174 3.7565 -3.3425 18 7 -0.5592 4.4409 -4.0796 19 6 -1.6518 4.6395 -3.3926 20 7 -1.5142 4.0749 -2.1757 21 6 -2.5329 4.0875 -1.1238 22 1 -2.2698 4.8289 -0.3694 23 6 -2.6177 2.7042 -0.4755 24 6 -3.8855 4.4451 -1.7496 25 6 -3.7333 5.7057 -2.6063 26 6 -2.8915 5.3757 -3.8452 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8304 0.3898 -0.1128 33 1 1.3073 3.4533 -3.6500 34 1 -1.9891 2.6810 0.4147 35 1 -3.6506 2.4964 -0.1965 36 1 -2.2737 1.9498 -1.1830 37 1 -4.2263 3.6199 -2.3747 38 1 -4.6143 4.6282 -0.9600 39 1 -4.7177 6.0553 -2.9175 40 1 -3.2370 6.4830 -2.0253 41 1 -3.4666 4.7450 -4.5230 42 1 -2.6069 6.2975 -4.3524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845529425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:52 Heat of formation + Delta-G solvation = -52.587069 kcal Electronic energy + Delta-G solvation = -24602.921890 eV Core-core repulsion = 21162.059672 eV Total energy + Delta-G solvation = -3440.862218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.66439 -41.22687 -38.20345 -37.68322 -35.54504 -34.67343 -33.89318 -31.85751 -30.81394 -29.48700 -28.03074 -25.17984 -24.33013 -23.98677 -23.02185 -22.34068 -21.25389 -20.16517 -19.81880 -18.84729 -18.14418 -17.47773 -16.84352 -16.54574 -15.84650 -15.64262 -15.40710 -15.30595 -15.13033 -14.73154 -14.66311 -14.46516 -14.24225 -13.94863 -13.57412 -13.34944 -13.20620 -12.97733 -12.78279 -12.62906 -12.44482 -12.07458 -12.01958 -11.98398 -11.79478 -11.69705 -11.47541 -11.42301 -10.98578 -10.96024 -10.78549 -10.50486 -9.63973 -8.97663 -6.53482 0.01766 1.17875 1.39738 1.45148 1.59188 1.66567 2.05058 2.13981 2.35961 2.82033 3.16701 3.45069 3.59903 3.64642 3.79261 4.00250 4.10956 4.14111 4.19854 4.26918 4.27761 4.35004 4.43684 4.52957 4.59425 4.71009 4.82732 4.88165 4.94744 4.95625 4.98806 5.04059 5.05211 5.13681 5.20323 5.27552 5.34344 5.37116 5.54471 5.87046 5.94588 6.02503 6.39191 6.70346 6.91465 7.19406 8.42325 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026661 B = 0.004601 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.982254 B = 6084.580386 C = 6597.864688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.212 3.788 4 H 0.033 0.967 5 C -0.634 4.634 6 H 0.031 0.969 7 C 0.011 3.989 8 N -0.905 5.905 9 Si 1.064 2.936 10 H -0.272 1.272 11 H -0.245 1.245 12 H -0.270 1.270 13 O -0.350 6.350 14 C 0.531 3.469 15 O -0.521 6.521 16 C -0.095 4.095 17 C 0.055 3.945 18 N -0.522 5.522 19 C 0.242 3.758 20 N -0.419 5.419 21 C 0.123 3.877 22 H 0.091 0.909 23 C -0.165 4.165 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.036 4.036 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.262 0.738 33 H 0.183 0.817 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.034 0.966 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.254 8.481 -4.747 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.158 3.842 4 H 0.051 0.949 5 C -0.670 4.670 6 H 0.049 0.951 7 C -0.192 4.192 8 N -0.537 5.537 9 Si 0.884 3.116 10 H -0.196 1.196 11 H -0.169 1.169 12 H -0.195 1.195 13 O -0.265 6.265 14 C 0.377 3.623 15 O -0.413 6.413 16 C -0.208 4.208 17 C -0.099 4.099 18 N -0.241 5.241 19 C -0.020 4.020 20 N -0.101 5.101 21 C 0.022 3.978 22 H 0.109 0.891 23 C -0.222 4.222 24 C -0.161 4.161 25 C -0.159 4.159 26 C -0.075 4.075 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.200 0.800 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.087 0.913 41 H 0.132 0.868 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -24.005 8.314 -3.481 25.641 hybrid contribution 0.918 -0.193 -0.988 1.362 sum -23.087 8.121 -4.469 24.879 Atomic orbital electron populations 1.21812 0.94833 1.01799 1.00971 1.22193 0.96053 0.97232 1.02071 1.20683 0.92232 0.88687 0.82603 0.94948 1.21939 0.90563 1.47791 1.06741 0.95068 1.26911 0.94632 0.90678 1.07000 1.70957 1.19734 1.38317 1.24710 0.83811 0.76968 0.78786 0.72060 1.19637 1.16886 1.19491 1.86584 1.34225 1.61750 1.43953 1.19656 0.79846 0.76217 0.86554 1.90666 1.60759 1.61328 1.28579 1.19432 0.90570 1.12784 0.98059 1.23013 1.00094 0.97679 0.89151 1.70011 1.01746 1.19987 1.32392 1.24589 0.98192 0.97822 0.81367 1.45600 1.11209 1.38833 1.14466 1.22052 0.87546 1.00262 0.87978 0.89087 1.22492 1.03953 0.93530 1.02217 1.22125 0.93076 0.99399 1.01535 1.21767 1.02300 0.97087 0.94774 1.20661 0.87227 1.00129 0.99447 0.92309 0.94713 0.91106 0.92850 0.91004 0.92859 0.80024 0.89789 0.88639 0.94734 0.90067 0.86217 0.86070 0.91324 0.86841 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.50 71.98 0.61 -4.49 16 2 C -0.14 -6.19 5.43 30.60 0.17 -6.03 16 3 C 0.21 10.80 1.93 29.85 0.06 10.86 16 4 H 0.03 1.69 5.71 -2.39 -0.01 1.67 16 5 C -0.63 -37.38 9.08 25.60 0.23 -37.15 16 6 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 7 C 0.01 0.61 5.23 84.66 0.44 1.06 16 8 N -0.90 -55.40 13.70 21.45 0.29 -55.11 16 9 Si 1.06 49.30 26.63 68.60 1.83 51.13 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.24 -10.15 6.14 99.48 0.61 -9.54 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 O -0.35 -16.97 9.54 -57.79 -0.55 -17.52 16 14 C 0.53 22.28 5.69 70.00 0.40 22.68 16 15 O -0.52 -21.50 9.39 19.48 0.18 -21.32 16 16 C -0.09 -3.44 6.46 40.11 0.26 -3.19 16 17 C 0.06 1.97 11.72 84.14 0.99 2.96 16 18 N -0.52 -16.79 11.19 -186.62 -2.09 -18.88 16 19 C 0.24 6.25 7.63 138.30 1.06 7.31 16 20 N -0.42 -11.93 2.94 -478.98 -1.41 -13.34 16 21 C 0.12 2.64 3.32 45.09 0.15 2.79 16 22 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 23 C -0.16 -3.99 7.94 71.98 0.57 -3.42 16 24 C -0.12 -1.39 5.05 30.74 0.16 -1.24 16 25 C -0.12 -1.06 5.96 30.78 0.18 -0.88 16 26 C -0.04 -0.49 6.33 30.11 0.19 -0.30 16 27 H 0.06 2.18 7.35 -2.39 -0.02 2.16 16 28 H 0.03 1.31 6.21 -2.39 -0.01 1.30 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 3.21 5.72 -2.39 -0.01 3.20 16 32 H 0.26 16.24 8.73 -92.70 -0.81 15.43 16 33 H 0.18 6.34 8.06 -2.91 -0.02 6.32 16 34 H 0.08 2.53 5.33 -5.14 -0.03 2.50 16 35 H 0.10 1.61 7.79 -2.39 -0.02 1.59 16 36 H 0.03 0.99 7.46 -2.39 -0.02 0.97 16 37 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 38 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -72.32 327.65 4.59 -67.74 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.87 Total: 16.33 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 5.46 Total: -9.04 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -3.20 Total: -87.33 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.37 Total: -38.83 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.83 Total: 51.13 kcal Total: -72.32 4.59 -67.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845529425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.150 kcal (2) G-P(sol) polarization free energy of solvation -72.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds