Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47418 * 2 1 4 4 H 1.09002 * 109.47049 * 305.23913 * 3 2 1 5 5 C 1.50698 * 109.47364 * 185.24536 * 3 2 1 6 6 H 1.07998 * 119.99723 * 275.23704 * 5 3 2 7 7 C 1.37879 * 120.00529 * 95.23633 * 5 3 2 8 8 N 1.31506 * 120.00419 * 174.60628 * 7 5 3 9 9 Si 1.86802 * 119.99571 * 354.88264 * 7 5 3 10 10 H 1.48497 * 109.47067 * 94.75487 * 9 7 5 11 11 H 1.48496 * 109.46894 * 214.75415 * 9 7 5 12 12 H 1.48498 * 109.47514 * 334.75502 * 9 7 5 13 13 O 1.45198 * 109.47322 * 65.23936 * 3 2 1 14 14 C 1.34872 * 117.00005 * 270.00419 * 13 3 2 15 15 O 1.21604 * 120.00517 * 359.97438 * 14 13 3 16 16 C 1.46589 * 119.99446 * 179.97438 * 14 13 3 17 17 C 1.36915 * 126.92691 * 25.17235 * 16 14 13 18 18 N 1.33417 * 107.82572 * 179.97438 * 17 16 14 19 19 C 1.30583 * 109.70294 * 359.97438 * 18 17 16 20 20 N 1.34850 * 109.00611 * 359.82392 * 19 18 17 21 21 C 1.46440 * 124.99697 * 179.53996 * 20 19 18 22 22 H 1.09004 * 109.37884 * 103.15274 * 21 20 19 23 23 C 1.52998 * 109.72245 * 223.51220 * 21 20 19 24 24 C 1.53265 * 108.87944 * 343.43714 * 21 20 19 25 25 C 1.53162 * 109.43664 * 50.01816 * 24 21 20 26 26 C 1.51111 * 127.07704 * 180.02562 * 19 18 17 27 27 H 1.08994 * 109.47118 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46724 * 300.00412 * 1 2 3 29 29 H 1.09000 * 109.47255 * 59.99772 * 1 2 3 30 30 H 1.09006 * 109.46993 * 240.00322 * 2 1 3 31 31 H 1.09000 * 109.47255 * 120.00228 * 2 1 3 32 32 H 0.96997 * 120.00597 * 180.02562 * 8 7 5 33 33 H 1.07999 * 126.08749 * 359.94233 * 17 16 14 34 34 H 1.08995 * 109.47703 * 184.30440 * 23 21 20 35 35 H 1.09008 * 109.47204 * 304.31045 * 23 21 20 36 36 H 1.09005 * 109.46735 * 64.29936 * 23 21 20 37 37 H 1.09000 * 109.47184 * 290.02708 * 24 21 20 38 38 H 1.09002 * 109.47645 * 170.01033 * 24 21 20 39 39 H 1.09000 * 109.51149 * 170.74875 * 25 24 21 40 40 H 1.08995 * 109.51248 * 50.58720 * 25 24 21 41 41 H 1.09004 * 109.71167 * 283.68053 * 26 19 18 42 42 H 1.08999 * 109.70707 * 44.25698 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6021 1.9827 -0.8394 5 6 3.5414 1.4444 -0.1299 6 1 4.1595 1.3314 0.7485 7 6 4.1260 1.5905 -1.3700 8 7 5.4326 1.6988 -1.4725 9 14 3.0614 1.6423 -2.9041 10 1 2.7743 3.0552 -3.2599 11 1 3.7781 0.9851 -4.0264 12 1 1.7854 0.9280 -2.6456 13 8 1.6609 2.0900 1.2431 14 6 0.4721 2.7267 1.2640 15 8 -0.2279 2.7405 0.2698 16 6 0.0240 3.4022 2.4854 17 6 0.8135 3.8970 3.4886 18 7 0.0129 4.4323 4.4120 19 6 -1.2330 4.3014 4.0437 20 7 -1.2749 3.6717 2.8520 21 6 -2.4992 3.3368 2.1216 22 1 -2.6358 4.0423 1.3020 23 6 -2.3963 1.9149 1.5660 24 6 -3.6902 3.4281 3.0818 25 6 -3.6458 4.7677 3.8230 26 6 -2.4587 4.7676 4.7945 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 5.8439 1.8019 -2.3449 33 1 1.8922 3.8600 3.5262 34 1 -3.2755 1.6972 0.9596 35 1 -1.5004 1.8290 0.9511 36 1 -2.3396 1.2055 2.3916 37 1 -3.6393 2.6120 3.8026 38 1 -4.6193 3.3562 2.5164 39 1 -4.5722 4.9063 4.3804 40 1 -3.5280 5.5780 3.1037 41 1 -2.6620 4.0898 5.6236 42 1 -2.2950 5.7756 5.1757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845529428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = -30.427910 kcal Electronic energy + Delta-G solvation = -24642.859607 eV Core-core repulsion = 21202.958282 eV Total energy + Delta-G solvation = -3439.901325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.46179 -39.62758 -37.22153 -36.08008 -33.75289 -33.47199 -32.09754 -30.76575 -29.52817 -28.06736 -27.03206 -23.77405 -23.12659 -22.77742 -22.01579 -20.71171 -19.71118 -19.01839 -17.88126 -16.79696 -16.58133 -15.95718 -15.77628 -15.34536 -14.84104 -14.60474 -14.38526 -14.22159 -13.62586 -13.30219 -13.15786 -12.89138 -12.73790 -12.41222 -12.28866 -12.14566 -11.73190 -11.68150 -11.55036 -11.42770 -11.41275 -11.12579 -10.88142 -10.65220 -10.19887 -10.12445 -9.92060 -9.67210 -9.61191 -9.40495 -9.19884 -8.71346 -8.33933 -6.32008 -4.35652 1.42834 2.39197 2.88553 3.16471 3.26186 3.30433 3.42960 3.56602 4.09449 4.22256 4.25635 4.37660 4.41128 4.91679 4.95959 4.99861 5.05931 5.21385 5.36636 5.38388 5.44480 5.47446 5.50413 5.63949 5.70503 5.77438 5.79158 5.85690 5.89806 5.93595 6.21782 6.29873 6.42343 6.57343 6.67685 6.69645 6.74836 7.09653 7.11336 7.27666 7.44449 7.99043 8.17870 8.52891 8.80140 9.27101 10.79038 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.004771 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.191064 B = 5867.745373 C = 6414.173222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.133 4.133 3 C 0.190 3.810 4 H 0.050 0.950 5 C -0.521 4.521 6 H 0.087 0.913 7 C 0.085 3.915 8 N -0.877 5.877 9 Si 0.866 3.134 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.256 1.256 13 O -0.329 6.329 14 C 0.534 3.466 15 O -0.517 6.517 16 C -0.065 4.065 17 C 0.060 3.940 18 N -0.496 5.496 19 C 0.225 3.775 20 N -0.419 5.419 21 C 0.134 3.866 22 H 0.095 0.905 23 C -0.208 4.208 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.034 4.034 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.271 0.729 33 H 0.188 0.812 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.117 3.174 8.742 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.171 4.171 3 C 0.137 3.863 4 H 0.068 0.932 5 C -0.558 4.558 6 H 0.105 0.895 7 C -0.121 4.121 8 N -0.513 5.513 9 Si 0.691 3.309 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.180 1.180 13 O -0.243 6.243 14 C 0.380 3.620 15 O -0.411 6.411 16 C -0.179 4.179 17 C -0.094 4.094 18 N -0.215 5.215 19 C -0.037 4.037 20 N -0.102 5.102 21 C 0.032 3.968 22 H 0.113 0.887 23 C -0.265 4.265 24 C -0.169 4.169 25 C -0.166 4.166 26 C -0.072 4.072 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.205 0.795 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.984 3.472 8.888 21.247 hybrid contribution -0.659 -0.382 -1.816 1.969 sum -19.643 3.091 7.072 21.105 Atomic orbital electron populations 1.22091 0.97777 1.00043 1.01527 1.22137 0.93517 0.98942 1.02522 1.21073 0.96236 0.88635 0.80320 0.93242 1.20781 0.87636 1.51497 0.95912 0.89494 1.24886 0.95020 0.93370 0.98782 1.69868 1.09487 1.46808 1.25133 0.87008 0.81421 0.79425 0.83004 1.19765 1.20547 1.17995 1.86793 1.32566 1.61417 1.43557 1.19459 0.81237 0.75932 0.85416 1.90648 1.55055 1.59779 1.35578 1.19774 0.84598 1.13444 1.00092 1.22911 1.00123 0.97693 0.88662 1.69971 0.99407 1.23143 1.28944 1.23427 0.95473 0.98916 0.85840 1.45302 1.05653 1.41930 1.17331 1.21643 0.81355 0.99499 0.94296 0.88669 1.22998 1.07577 0.93114 1.02774 1.22044 0.97453 0.98684 0.98754 1.21728 0.98464 0.97615 0.98759 1.20266 0.87340 1.02962 0.96667 0.93934 0.93514 0.92646 0.90857 0.91769 0.91933 0.79479 0.90772 0.86070 0.92569 0.90515 0.89201 0.89787 0.90979 0.88972 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.32 37.16 0.31 -2.61 16 2 C -0.13 -2.85 5.33 -26.73 -0.14 -2.99 16 3 C 0.19 4.63 1.79 -27.88 -0.05 4.58 16 4 H 0.05 1.26 4.61 -51.93 -0.24 1.02 16 5 C -0.52 -14.51 9.24 -34.44 -0.32 -14.82 16 6 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 7 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 8 N -0.88 -25.77 13.96 55.43 0.77 -25.00 16 9 Si 0.87 20.86 26.57 -169.99 -4.52 16.34 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.26 -5.90 6.21 56.52 0.35 -5.55 16 13 O -0.33 -7.57 9.74 -40.96 -0.40 -7.97 16 14 C 0.53 11.01 5.58 34.10 0.19 11.20 16 15 O -0.52 -10.93 11.17 -19.34 -0.22 -11.14 16 16 C -0.07 -1.18 6.60 -82.37 -0.54 -1.72 16 17 C 0.06 1.04 11.79 -17.34 -0.20 0.83 16 18 N -0.50 -8.15 11.19 -10.34 -0.12 -8.27 16 19 C 0.23 3.15 7.63 -155.32 -1.19 1.97 16 20 N -0.42 -6.31 3.01 -102.75 -0.31 -6.62 16 21 C 0.13 1.64 3.26 -67.83 -0.22 1.42 16 22 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 23 C -0.21 -2.75 8.60 37.16 0.32 -2.43 16 24 C -0.13 -1.07 5.26 -26.51 -0.14 -1.21 16 25 C -0.13 -0.90 5.96 -26.44 -0.16 -1.06 16 26 C -0.03 -0.30 6.33 -27.48 -0.17 -0.47 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.85 4.29 -51.93 -0.22 0.63 16 29 H 0.05 1.06 7.80 -51.93 -0.41 0.66 16 30 H 0.07 1.57 7.33 -51.93 -0.38 1.19 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.19 3.04 8.06 -52.49 -0.42 2.62 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.12 2.02 1.54 -53.81 -0.08 1.93 16 36 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 37 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -31.47 326.70 -8.28 -39.75 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.01 Total: 3.03 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -2.42 Total: -5.05 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.35 Total: -39.88 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.61 Total: -19.11 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.52 Total: 16.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.47 -8.28 -39.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845529428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.324 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds