Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47418 * 2 1 4 4 H 1.09002 * 109.47049 * 305.23913 * 3 2 1 5 5 C 1.50698 * 109.47364 * 185.24536 * 3 2 1 6 6 H 1.07998 * 119.99723 * 275.23704 * 5 3 2 7 7 C 1.37879 * 120.00529 * 95.23633 * 5 3 2 8 8 N 1.31506 * 120.00419 * 174.60628 * 7 5 3 9 9 Si 1.86802 * 119.99571 * 354.88264 * 7 5 3 10 10 H 1.48497 * 109.47067 * 94.75487 * 9 7 5 11 11 H 1.48496 * 109.46894 * 214.75415 * 9 7 5 12 12 H 1.48498 * 109.47514 * 334.75502 * 9 7 5 13 13 O 1.45198 * 109.47322 * 65.23936 * 3 2 1 14 14 C 1.34872 * 117.00005 * 270.00419 * 13 3 2 15 15 O 1.21604 * 120.00517 * 359.97438 * 14 13 3 16 16 C 1.46589 * 119.99446 * 179.97438 * 14 13 3 17 17 C 1.36915 * 126.92691 * 25.17235 * 16 14 13 18 18 N 1.33417 * 107.82572 * 179.97438 * 17 16 14 19 19 C 1.30583 * 109.70294 * 359.97438 * 18 17 16 20 20 N 1.34850 * 109.00611 * 359.82392 * 19 18 17 21 21 C 1.46440 * 124.99697 * 179.53996 * 20 19 18 22 22 H 1.09004 * 109.37884 * 103.15274 * 21 20 19 23 23 C 1.52998 * 109.72245 * 223.51220 * 21 20 19 24 24 C 1.53265 * 108.87944 * 343.43714 * 21 20 19 25 25 C 1.53162 * 109.43664 * 50.01816 * 24 21 20 26 26 C 1.51111 * 127.07704 * 180.02562 * 19 18 17 27 27 H 1.08994 * 109.47118 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46724 * 300.00412 * 1 2 3 29 29 H 1.09000 * 109.47255 * 59.99772 * 1 2 3 30 30 H 1.09006 * 109.46993 * 240.00322 * 2 1 3 31 31 H 1.09000 * 109.47255 * 120.00228 * 2 1 3 32 32 H 0.96997 * 120.00597 * 180.02562 * 8 7 5 33 33 H 1.07999 * 126.08749 * 359.94233 * 17 16 14 34 34 H 1.08995 * 109.47703 * 184.30440 * 23 21 20 35 35 H 1.09008 * 109.47204 * 304.31045 * 23 21 20 36 36 H 1.09005 * 109.46735 * 64.29936 * 23 21 20 37 37 H 1.09000 * 109.47184 * 290.02708 * 24 21 20 38 38 H 1.09002 * 109.47645 * 170.01033 * 24 21 20 39 39 H 1.09000 * 109.51149 * 170.74875 * 25 24 21 40 40 H 1.08995 * 109.51248 * 50.58720 * 25 24 21 41 41 H 1.09004 * 109.71167 * 283.68053 * 26 19 18 42 42 H 1.08999 * 109.70707 * 44.25698 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6021 1.9827 -0.8394 5 6 3.5414 1.4444 -0.1299 6 1 4.1595 1.3314 0.7485 7 6 4.1260 1.5905 -1.3700 8 7 5.4326 1.6988 -1.4725 9 14 3.0614 1.6423 -2.9041 10 1 2.7743 3.0552 -3.2599 11 1 3.7781 0.9851 -4.0264 12 1 1.7854 0.9280 -2.6456 13 8 1.6609 2.0900 1.2431 14 6 0.4721 2.7267 1.2640 15 8 -0.2279 2.7405 0.2698 16 6 0.0240 3.4022 2.4854 17 6 0.8135 3.8970 3.4886 18 7 0.0129 4.4323 4.4120 19 6 -1.2330 4.3014 4.0437 20 7 -1.2749 3.6717 2.8520 21 6 -2.4992 3.3368 2.1216 22 1 -2.6358 4.0423 1.3020 23 6 -2.3963 1.9149 1.5660 24 6 -3.6902 3.4281 3.0818 25 6 -3.6458 4.7677 3.8230 26 6 -2.4587 4.7676 4.7945 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 5.8439 1.8019 -2.3449 33 1 1.8922 3.8600 3.5262 34 1 -3.2755 1.6972 0.9596 35 1 -1.5004 1.8290 0.9511 36 1 -2.3396 1.2055 2.3916 37 1 -3.6393 2.6120 3.8026 38 1 -4.6193 3.3562 2.5164 39 1 -4.5722 4.9063 4.3804 40 1 -3.5280 5.5780 3.1037 41 1 -2.6620 4.0898 5.6236 42 1 -2.2950 5.7756 5.1757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845529428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = -48.816555 kcal Electronic energy + Delta-G solvation = -24643.656998 eV Core-core repulsion = 21202.958282 eV Total energy + Delta-G solvation = -3440.698716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.65005 -41.29275 -38.18015 -37.71670 -35.40033 -34.67683 -34.01894 -31.84589 -30.74960 -29.80137 -28.08146 -25.28526 -24.56402 -23.98080 -23.01323 -22.18264 -21.33685 -20.05110 -19.53502 -18.51634 -18.25775 -17.56850 -16.98893 -16.67139 -16.16618 -15.66754 -15.46827 -15.23873 -15.03385 -14.86778 -14.52223 -14.32406 -13.99953 -13.92775 -13.74217 -13.48335 -13.26044 -13.05726 -12.76676 -12.65940 -12.63666 -12.11046 -12.03929 -11.93881 -11.88445 -11.63508 -11.49029 -11.31954 -11.17904 -11.02233 -10.78625 -10.74389 -9.60679 -8.48548 -6.58326 0.06359 1.11421 1.26604 1.28543 1.39792 1.58598 2.01650 2.12655 2.19422 2.89524 3.19855 3.46160 3.61776 3.62747 3.81221 4.01905 4.12793 4.14777 4.20477 4.27071 4.29995 4.36086 4.43019 4.53654 4.62052 4.70867 4.82986 4.87975 4.92986 4.97716 5.00602 5.03353 5.05980 5.14953 5.24997 5.27175 5.32156 5.38271 5.48459 5.60742 6.03717 6.11885 6.50749 6.70891 6.87302 7.09329 8.66812 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.004771 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.191064 B = 5867.745373 C = 6414.173222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.195 3.805 4 H 0.041 0.959 5 C -0.536 4.536 6 H 0.046 0.954 7 C 0.036 3.964 8 N -0.922 5.922 9 Si 0.926 3.074 10 H -0.273 1.273 11 H -0.266 1.266 12 H -0.239 1.239 13 O -0.347 6.347 14 C 0.534 3.466 15 O -0.523 6.523 16 C -0.095 4.095 17 C 0.054 3.946 18 N -0.521 5.521 19 C 0.241 3.759 20 N -0.419 5.419 21 C 0.124 3.876 22 H 0.090 0.910 23 C -0.207 4.207 24 C -0.124 4.124 25 C -0.121 4.121 26 C -0.036 4.036 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.276 0.724 33 H 0.185 0.815 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.280 3.403 9.182 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.142 3.858 4 H 0.059 0.941 5 C -0.573 4.573 6 H 0.064 0.936 7 C -0.165 4.165 8 N -0.559 5.559 9 Si 0.749 3.251 10 H -0.198 1.198 11 H -0.190 1.190 12 H -0.162 1.162 13 O -0.262 6.262 14 C 0.381 3.619 15 O -0.416 6.416 16 C -0.209 4.209 17 C -0.100 4.100 18 N -0.240 5.240 19 C -0.021 4.021 20 N -0.102 5.102 21 C 0.023 3.977 22 H 0.108 0.892 23 C -0.264 4.264 24 C -0.161 4.161 25 C -0.159 4.159 26 C -0.074 4.074 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.202 0.798 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.086 0.914 41 H 0.132 0.868 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.177 3.693 9.331 25.256 hybrid contribution 0.612 -0.389 -1.795 1.936 sum -22.564 3.304 7.536 24.018 Atomic orbital electron populations 1.21986 0.95162 1.01973 1.01270 1.22056 0.95800 0.96613 1.02537 1.20871 0.93953 0.90390 0.80568 0.94142 1.20933 0.89574 1.51903 0.94877 0.93605 1.25680 0.96179 0.92767 1.01906 1.69980 1.11322 1.48309 1.26307 0.86048 0.80399 0.79572 0.79129 1.19830 1.19024 1.16224 1.86722 1.34449 1.62382 1.42666 1.19662 0.80217 0.75623 0.86394 1.90642 1.54876 1.60027 1.36078 1.19496 0.86541 1.15197 0.99659 1.23018 1.00458 0.97588 0.88969 1.70006 1.00589 1.24268 1.29095 1.24561 0.96285 0.96178 0.85114 1.45552 1.05258 1.41639 1.17705 1.21987 0.81719 0.98622 0.95372 0.89172 1.22917 1.06932 0.93940 1.02598 1.22086 0.96240 0.99554 0.98268 1.21760 0.98997 0.96693 0.98431 1.20653 0.85570 1.04048 0.97162 0.90821 0.93522 0.93214 0.90865 0.91778 0.91441 0.79802 0.88473 0.89314 0.92537 0.90099 0.86432 0.86099 0.91350 0.86837 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 8.32 71.98 0.60 -4.64 16 2 C -0.13 -5.64 5.33 30.59 0.16 -5.47 16 3 C 0.20 9.75 1.79 29.85 0.05 9.80 16 4 H 0.04 2.08 4.61 -2.39 -0.01 2.07 16 5 C -0.54 -31.21 9.24 25.60 0.24 -30.98 16 6 H 0.05 2.96 8.06 -2.91 -0.02 2.93 16 7 C 0.04 2.07 5.47 84.66 0.46 2.54 16 8 N -0.92 -56.08 13.96 21.45 0.30 -55.78 16 9 Si 0.93 43.37 26.57 68.60 1.82 45.19 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.24 -10.45 6.21 99.48 0.62 -9.83 16 13 O -0.35 -16.61 9.74 -57.85 -0.56 -17.17 16 14 C 0.53 22.50 5.58 70.00 0.39 22.89 16 15 O -0.52 -22.20 11.17 19.49 0.22 -21.98 16 16 C -0.09 -3.48 6.60 40.10 0.26 -3.22 16 17 C 0.05 1.94 11.79 84.14 0.99 2.93 16 18 N -0.52 -16.84 11.19 -186.64 -2.09 -18.93 16 19 C 0.24 6.29 7.63 138.30 1.06 7.34 16 20 N -0.42 -12.10 3.01 -478.99 -1.44 -13.54 16 21 C 0.12 2.75 3.26 45.09 0.15 2.89 16 22 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 23 C -0.21 -5.07 8.60 71.98 0.62 -4.45 16 24 C -0.12 -1.48 5.26 30.74 0.16 -1.32 16 25 C -0.12 -1.12 5.96 30.78 0.18 -0.94 16 26 C -0.04 -0.50 6.33 30.11 0.19 -0.31 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.05 1.66 4.29 -2.38 -0.01 1.65 16 29 H 0.05 1.82 7.80 -2.39 -0.02 1.80 16 30 H 0.07 3.09 7.33 -2.38 -0.02 3.07 16 31 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.18 6.40 8.06 -2.91 -0.02 6.37 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 35 H 0.09 2.86 1.54 -32.26 -0.05 2.81 16 36 H 0.06 1.34 8.13 -2.38 -0.02 1.32 16 37 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 38 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 41 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 42 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -72.02 326.70 4.66 -67.36 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.89 Total: 17.79 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 5.52 Total: -2.93 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -3.23 Total: -88.25 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.35 Total: -39.16 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.82 Total: 45.19 kcal Total: -72.02 4.66 -67.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845529428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.543 kcal (2) G-P(sol) polarization free energy of solvation -72.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds