Wall clock time and date at job start Tue Mar 31 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46710 * 2 1 4 4 C 1.50699 * 109.46850 * 240.00061 * 2 1 3 5 5 H 1.08001 * 119.99736 * 239.99510 * 4 2 1 6 6 C 1.37866 * 120.00286 * 59.99918 * 4 2 1 7 7 N 1.31515 * 120.00180 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00219 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46756 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47134 * 119.99892 * 8 6 4 11 11 H 1.48501 * 109.47302 * 240.00308 * 8 6 4 12 12 C 1.53001 * 109.46759 * 119.99735 * 2 1 3 13 13 O 1.45195 * 109.47430 * 300.00164 * 12 2 1 14 14 C 1.34750 * 116.99954 * 180.02562 * 13 12 2 15 15 O 1.21529 * 120.00437 * 0.02562 * 14 13 12 16 16 C 1.47291 * 120.00183 * 179.97438 * 14 13 12 17 17 C 1.41346 * 126.42427 * 0.02562 * 16 14 13 18 18 N 1.30429 * 108.01346 * 179.97438 * 17 16 14 19 19 N 1.39933 * 108.91863 * 359.74679 * 18 17 16 20 20 C 1.46498 * 125.74757 * 180.27030 * 19 18 17 21 21 C 1.52999 * 109.47118 * 305.18751 * 20 19 18 22 22 C 1.53006 * 117.49465 * 243.74322 * 21 20 19 23 23 C 1.52995 * 117.49897 * 175.08575 * 21 20 19 24 24 C 1.34228 * 108.51218 * 0.43017 * 19 18 17 25 25 H 1.08998 * 109.47255 * 300.00111 * 1 2 3 26 26 H 1.09003 * 109.47232 * 59.99939 * 1 2 3 27 27 H 1.09006 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46544 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47160 * 299.99700 * 3 2 1 30 30 H 1.08994 * 109.47107 * 60.00405 * 3 2 1 31 31 H 0.96996 * 120.00490 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46736 * 179.97438 * 12 2 1 33 33 H 1.08999 * 109.47137 * 60.00573 * 12 2 1 34 34 H 1.08000 * 125.99074 * 359.96308 * 17 16 14 35 35 H 1.09004 * 109.46495 * 65.18033 * 20 19 18 36 36 H 1.08992 * 109.47218 * 185.18197 * 20 19 18 37 37 H 1.09003 * 115.55022 * 29.40919 * 21 20 19 38 38 H 1.09000 * 117.49954 * 359.97438 * 22 21 20 39 39 H 1.09005 * 117.49822 * 145.01447 * 22 21 20 40 40 H 1.09001 * 117.49999 * 214.97594 * 23 21 20 41 41 H 1.08997 * 117.50067 * 359.97332 * 23 21 20 42 42 H 1.08002 * 126.29923 * 179.84925 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1859 -4.8160 12 6 2.0399 -0.7212 1.2493 13 8 1.5559 -0.0368 2.4348 14 6 1.9184 -0.5485 3.6275 15 8 2.6202 -1.5395 3.6756 16 6 1.4649 0.0938 4.8730 17 6 0.6506 1.2446 4.9756 18 7 0.4705 1.4997 6.2419 19 7 1.1455 0.5359 6.9993 20 6 1.1836 0.4697 8.4623 21 6 1.6819 1.8042 9.0205 22 6 3.0053 1.7988 9.7884 23 6 1.6841 1.9776 10.5406 24 6 1.7551 -0.3157 6.1598 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7086 1.1612 -3.4843 32 1 3.1299 -0.7216 1.2491 33 1 1.6767 -1.7489 1.2493 34 1 0.2484 1.8131 4.1501 35 1 0.1823 0.2679 8.8430 36 1 1.8579 -0.3284 8.7725 37 1 1.4554 2.6813 8.4142 38 1 3.5206 0.8443 9.8963 39 1 3.6493 2.6724 9.6876 40 1 1.4595 2.9688 10.9344 41 1 1.3302 1.1410 11.1430 42 1 2.3578 -1.1673 6.4391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870286989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:25 Heat of formation + Delta-G solvation = 7.883746 kcal Electronic energy + Delta-G solvation = -22783.317869 eV Core-core repulsion = 19345.077862 eV Total energy + Delta-G solvation = -3438.240007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45047 -39.40001 -37.94236 -36.38076 -34.70232 -33.18032 -31.22685 -30.44720 -27.78088 -25.65819 -25.55202 -25.05623 -22.92472 -22.87080 -22.03322 -20.58663 -19.94699 -18.75220 -18.02972 -16.51512 -16.07415 -15.81679 -15.66310 -15.43067 -15.13937 -14.72738 -14.41433 -14.12234 -13.42239 -13.06702 -12.95293 -12.76450 -12.70277 -12.15505 -12.02376 -11.77742 -11.40304 -11.24238 -11.00797 -10.94439 -10.92785 -10.63344 -10.57612 -10.35468 -10.16154 -9.94605 -9.80254 -9.68627 -9.33911 -9.24701 -8.78471 -8.69105 -8.33505 -5.97685 -4.08873 1.40104 2.08673 2.16390 3.25962 3.29673 3.36996 3.39556 3.47517 3.52554 3.95692 4.31363 4.41758 4.42783 4.54443 4.62701 4.80324 4.96559 5.02919 5.15268 5.25299 5.28730 5.39137 5.41294 5.61071 5.72635 5.83493 6.18943 6.19646 6.39746 6.55841 6.63727 6.82576 7.05158 7.16345 7.21273 7.23875 7.44710 7.48078 7.68659 7.74952 8.11266 8.22260 8.39845 8.47469 8.91476 9.56424 11.03537 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.042785 B = 0.002697 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.279695 B =10378.072580 C =10609.390429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.129 4.129 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.087 3.913 13 O -0.343 6.343 14 C 0.535 3.465 15 O -0.533 6.533 16 C -0.271 4.271 17 C 0.106 3.894 18 N -0.301 5.301 19 N -0.360 5.360 20 C 0.163 3.837 21 C -0.171 4.171 22 C -0.178 4.178 23 C -0.169 4.169 24 C 0.129 3.871 25 H 0.017 0.983 26 H 0.083 0.917 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.083 0.917 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.200 0.800 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 1.627 23.495 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.187 4.187 4 C -0.548 4.548 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.014 3.986 13 O -0.259 6.259 14 C 0.380 3.620 15 O -0.425 6.425 16 C -0.284 4.284 17 C -0.082 4.082 18 N -0.120 5.120 19 N -0.138 5.138 20 C 0.043 3.957 21 C -0.190 4.190 22 C -0.215 4.215 23 C -0.207 4.207 24 C -0.022 4.022 25 H 0.036 0.964 26 H 0.102 0.898 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.217 0.783 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.169 2.230 24.320 24.423 hybrid contribution 0.863 -1.174 -1.496 2.088 sum 0.694 1.056 22.824 22.859 Atomic orbital electron populations 1.21769 0.97323 0.98946 1.00672 1.18247 0.93425 0.93077 0.88312 1.21766 0.98073 0.98204 1.00668 1.20986 1.31742 1.12214 0.89827 0.92467 1.24856 0.94861 0.94941 0.98767 1.69841 1.36451 1.22651 1.23121 0.86499 0.78630 0.79698 0.82946 1.19791 1.21011 1.21005 1.23644 0.98157 0.95757 0.81066 1.86557 1.69183 1.55652 1.14488 1.19974 0.76852 0.81184 0.83995 1.90784 1.37077 1.26101 1.88520 1.19510 1.13761 1.03803 0.91285 1.24320 0.94751 0.94673 0.94440 1.77188 1.19017 1.12017 1.03775 1.48464 1.37787 1.21030 1.06567 1.21376 1.03296 0.97360 0.73702 1.22571 1.02200 0.99107 0.95139 1.23139 0.90751 1.03769 1.03822 1.22988 1.01111 1.03626 0.92930 1.22913 0.95121 0.95095 0.89114 0.96357 0.89798 0.95869 0.95868 0.89807 0.96351 0.93011 0.92601 0.92603 0.78343 0.88779 0.88198 0.86157 0.88443 0.88425 0.88232 0.88379 0.79485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.11 37.16 0.30 -2.84 16 2 C 0.07 1.73 0.58 -155.66 -0.09 1.64 16 3 C -0.13 -3.15 8.11 37.16 0.30 -2.84 16 4 C -0.51 -13.74 8.01 -34.44 -0.28 -14.02 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 8 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.09 1.96 4.27 37.16 0.16 2.12 16 13 O -0.34 -7.06 8.73 -40.63 -0.35 -7.42 16 14 C 0.53 10.06 7.95 34.41 0.27 10.34 16 15 O -0.53 -11.07 16.69 -19.29 -0.32 -11.39 16 16 C -0.27 -4.10 6.13 -105.08 -0.64 -4.74 16 17 C 0.11 1.48 11.87 -16.97 -0.20 1.28 16 18 N -0.30 -3.97 12.13 30.87 0.37 -3.60 16 19 N -0.36 -3.91 3.65 -60.80 -0.22 -4.13 16 20 C 0.16 1.12 6.77 -4.04 -0.03 1.10 16 21 C -0.17 -1.21 5.92 -90.62 -0.54 -1.74 16 22 C -0.18 -1.03 10.18 -26.69 -0.27 -1.31 16 23 C -0.17 -0.86 10.25 -26.70 -0.27 -1.14 16 24 C 0.13 1.53 11.25 -16.55 -0.19 1.34 16 25 H 0.02 0.40 7.68 -51.93 -0.40 0.00 16 26 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 30 H 0.02 0.40 7.68 -51.93 -0.40 0.00 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.20 2.52 8.06 -52.49 -0.42 2.10 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.44 7.79 -51.93 -0.40 0.03 16 37 H 0.12 1.11 7.89 -51.93 -0.41 0.70 16 38 H 0.10 0.47 8.03 -51.93 -0.42 0.05 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.19 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -30.98 354.47 -7.68 -38.65 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.43 Total: -0.70 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -1.56 Total: -9.10 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.67 Total: -31.35 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.68 Total: -18.81 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.98 -7.68 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870286989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.536 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds