Wall clock time and date at job start Tue Mar 31 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46710 * 2 1 4 4 C 1.50699 * 109.46850 * 240.00061 * 2 1 3 5 5 H 1.08001 * 119.99736 * 239.99510 * 4 2 1 6 6 C 1.37866 * 120.00286 * 59.99918 * 4 2 1 7 7 N 1.31515 * 120.00180 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00219 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46756 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47134 * 119.99892 * 8 6 4 11 11 H 1.48501 * 109.47302 * 240.00308 * 8 6 4 12 12 C 1.53001 * 109.46759 * 119.99735 * 2 1 3 13 13 O 1.45195 * 109.47430 * 300.00164 * 12 2 1 14 14 C 1.34750 * 116.99954 * 180.02562 * 13 12 2 15 15 O 1.21529 * 120.00437 * 0.02562 * 14 13 12 16 16 C 1.47291 * 120.00183 * 179.97438 * 14 13 12 17 17 C 1.41346 * 126.42427 * 0.02562 * 16 14 13 18 18 N 1.30429 * 108.01346 * 179.97438 * 17 16 14 19 19 N 1.39933 * 108.91863 * 359.74679 * 18 17 16 20 20 C 1.46498 * 125.74757 * 180.27030 * 19 18 17 21 21 C 1.52999 * 109.47118 * 305.18751 * 20 19 18 22 22 C 1.53006 * 117.49465 * 243.74322 * 21 20 19 23 23 C 1.52995 * 117.49897 * 175.08575 * 21 20 19 24 24 C 1.34228 * 108.51218 * 0.43017 * 19 18 17 25 25 H 1.08998 * 109.47255 * 300.00111 * 1 2 3 26 26 H 1.09003 * 109.47232 * 59.99939 * 1 2 3 27 27 H 1.09006 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46544 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47160 * 299.99700 * 3 2 1 30 30 H 1.08994 * 109.47107 * 60.00405 * 3 2 1 31 31 H 0.96996 * 120.00490 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46736 * 179.97438 * 12 2 1 33 33 H 1.08999 * 109.47137 * 60.00573 * 12 2 1 34 34 H 1.08000 * 125.99074 * 359.96308 * 17 16 14 35 35 H 1.09004 * 109.46495 * 65.18033 * 20 19 18 36 36 H 1.08992 * 109.47218 * 185.18197 * 20 19 18 37 37 H 1.09003 * 115.55022 * 29.40919 * 21 20 19 38 38 H 1.09000 * 117.49954 * 359.97438 * 22 21 20 39 39 H 1.09005 * 117.49822 * 145.01447 * 22 21 20 40 40 H 1.09001 * 117.49999 * 214.97594 * 23 21 20 41 41 H 1.08997 * 117.50067 * 359.97332 * 23 21 20 42 42 H 1.08002 * 126.29923 * 179.84925 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1859 -4.8160 12 6 2.0399 -0.7212 1.2493 13 8 1.5559 -0.0368 2.4348 14 6 1.9184 -0.5485 3.6275 15 8 2.6202 -1.5395 3.6756 16 6 1.4649 0.0938 4.8730 17 6 0.6506 1.2446 4.9756 18 7 0.4705 1.4997 6.2419 19 7 1.1455 0.5359 6.9993 20 6 1.1836 0.4697 8.4623 21 6 1.6819 1.8042 9.0205 22 6 3.0053 1.7988 9.7884 23 6 1.6841 1.9776 10.5406 24 6 1.7551 -0.3157 6.1598 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7086 1.1612 -3.4843 32 1 3.1299 -0.7216 1.2491 33 1 1.6767 -1.7489 1.2493 34 1 0.2484 1.8131 4.1501 35 1 0.1823 0.2679 8.8430 36 1 1.8579 -0.3284 8.7725 37 1 1.4554 2.6813 8.4142 38 1 3.5206 0.8443 9.8963 39 1 3.6493 2.6724 9.6876 40 1 1.4595 2.9688 10.9344 41 1 1.3302 1.1410 11.1430 42 1 2.3578 -1.1673 6.4391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870286989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:24 Heat of formation + Delta-G solvation = -7.696203 kcal Electronic energy + Delta-G solvation = -22783.993466 eV Core-core repulsion = 19345.077862 eV Total energy + Delta-G solvation = -3438.915604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.46106 -40.92003 -38.47718 -38.11509 -36.48998 -34.03212 -33.21374 -31.53243 -28.67314 -27.53116 -27.43469 -26.95442 -24.20823 -23.29638 -22.81420 -21.45245 -21.12258 -20.62148 -19.14210 -17.92252 -17.59659 -17.28613 -17.10356 -16.60826 -16.36661 -15.97028 -15.27145 -14.92225 -14.90078 -14.62689 -14.53023 -14.02791 -13.76898 -13.57445 -13.27084 -13.12642 -12.81114 -12.74003 -12.57399 -12.40106 -12.30068 -12.18419 -12.10272 -11.66720 -11.48683 -11.38101 -11.21821 -11.12650 -11.06382 -10.69135 -10.59860 -10.38115 -9.83773 -8.02002 -6.19835 0.33733 1.02340 1.25299 1.43650 1.46544 1.56685 1.99821 2.21021 2.48232 2.82503 3.21284 3.32231 3.72792 3.79498 3.93943 3.99438 4.01953 4.16563 4.24158 4.33106 4.34439 4.50899 4.59504 4.62808 4.70730 4.78385 4.91927 5.00065 5.09230 5.18349 5.23156 5.24593 5.27623 5.34686 5.42168 5.64121 5.67674 5.71804 5.80782 6.11402 6.21636 6.40362 6.44482 6.83237 6.93365 7.47962 8.97856 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.042785 B = 0.002697 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.279695 B =10378.072580 C =10609.390429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.061 3.939 3 C -0.119 4.119 4 C -0.531 4.531 5 H 0.049 0.951 6 C 0.026 3.974 7 N -0.900 5.900 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.099 3.901 13 O -0.348 6.348 14 C 0.535 3.465 15 O -0.558 6.558 16 C -0.305 4.305 17 C 0.101 3.899 18 N -0.314 5.314 19 N -0.348 5.348 20 C 0.155 3.845 21 C -0.188 4.188 22 C -0.179 4.179 23 C -0.155 4.155 24 C 0.152 3.848 25 H 0.033 0.967 26 H 0.063 0.937 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.262 0.738 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.203 0.797 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 0.987 25.606 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.061 3.939 3 C -0.177 4.177 4 C -0.569 4.569 5 H 0.068 0.932 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.026 3.974 13 O -0.264 6.264 14 C 0.382 3.618 15 O -0.452 6.452 16 C -0.318 4.318 17 C -0.086 4.086 18 N -0.134 5.134 19 N -0.125 5.125 20 C 0.036 3.964 21 C -0.207 4.207 22 C -0.216 4.216 23 C -0.192 4.192 24 C -0.002 4.002 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.220 0.780 35 H 0.126 0.874 36 H 0.152 0.848 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.136 0.864 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.056 1.615 26.470 26.519 hybrid contribution 0.778 -0.930 -1.976 2.318 sum 0.833 0.685 24.494 24.518 Atomic orbital electron populations 1.21624 0.97100 0.98596 1.00339 1.18265 0.93626 0.93249 0.88753 1.21622 0.97726 0.97984 1.00331 1.21235 1.32124 1.12393 0.91156 0.93229 1.25519 0.95037 0.95604 1.01186 1.69950 1.36820 1.23354 1.23724 0.85589 0.78133 0.78661 0.79717 1.19690 1.20594 1.20591 1.23232 0.97498 0.95169 0.81537 1.86540 1.69457 1.55656 1.14740 1.20505 0.76216 0.80906 0.84152 1.90759 1.38450 1.27309 1.88657 1.19414 1.16343 1.05244 0.90812 1.24409 0.94711 0.94516 0.94997 1.77167 1.19637 1.12995 1.03567 1.48835 1.36040 1.19673 1.07953 1.21844 1.05122 0.98348 0.71072 1.22442 1.03785 0.98223 0.96210 1.23230 0.90646 1.04317 1.03360 1.23085 1.00112 1.04477 0.91527 1.23328 0.93737 0.95106 0.87993 0.94799 0.91836 0.96168 0.96191 0.91838 0.94805 0.92886 0.93315 0.93284 0.78044 0.87402 0.84809 0.88906 0.86942 0.89117 0.88224 0.86421 0.76430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.11 71.98 0.58 -5.23 16 2 C 0.06 3.07 0.58 -52.93 -0.03 3.04 16 3 C -0.12 -5.82 8.11 71.98 0.58 -5.24 16 4 C -0.53 -28.93 8.01 25.60 0.21 -28.72 16 5 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 6 C 0.03 1.42 5.15 84.65 0.44 1.86 16 7 N -0.90 -49.58 9.35 21.44 0.20 -49.38 16 8 Si 0.95 43.12 29.54 68.60 2.03 45.14 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 C 0.10 4.54 4.27 71.98 0.31 4.85 16 13 O -0.35 -14.36 8.73 -56.61 -0.49 -14.85 16 14 C 0.53 20.00 7.95 70.20 0.56 20.56 16 15 O -0.56 -23.05 16.69 19.74 0.33 -22.72 16 16 C -0.31 -8.94 6.13 -20.16 -0.12 -9.06 16 17 C 0.10 2.77 11.87 85.67 1.02 3.79 16 18 N -0.31 -7.95 12.13 -56.25 -0.68 -8.63 16 19 N -0.35 -6.74 3.65 -346.26 -1.26 -8.00 16 20 C 0.15 1.63 6.77 86.38 0.58 2.21 16 21 C -0.19 -2.26 5.92 -10.79 -0.06 -2.32 16 22 C -0.18 -1.65 10.18 30.62 0.31 -1.33 16 23 C -0.15 -1.17 10.25 30.62 0.31 -0.85 16 24 C 0.15 3.24 11.25 84.30 0.95 4.19 16 25 H 0.03 1.49 7.68 -2.39 -0.02 1.48 16 26 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 27 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 30 H 0.03 1.49 7.68 -2.39 -0.02 1.48 16 31 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.20 5.13 8.06 -2.91 -0.02 5.10 16 35 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.13 0.54 7.79 -2.39 -0.02 0.52 16 37 H 0.09 1.66 7.89 -2.39 -0.02 1.64 16 38 H 0.11 0.70 8.03 -2.39 -0.02 0.68 16 39 H 0.09 0.95 8.14 -2.38 -0.02 0.94 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.22 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -66.67 354.47 6.75 -59.92 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.00 Total: 10.80 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 5.63 Total: -12.27 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -1.75 Total: -66.01 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.16 Total: -37.58 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -66.67 6.75 -59.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870286989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.220 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds