Wall clock time and date at job start Tue Mar 31 2020 06:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 H 1.09004 * 109.46563 * 305.00153 * 3 2 1 5 5 C 1.50697 * 109.47311 * 185.00283 * 3 2 1 6 6 H 1.08001 * 119.99695 * 245.63274 * 5 3 2 7 7 C 1.37878 * 120.00393 * 65.62382 * 5 3 2 8 8 N 1.31513 * 119.99425 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00181 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46947 * 90.00573 * 9 7 5 11 11 H 1.48496 * 109.47028 * 210.00143 * 9 7 5 12 12 H 1.48501 * 109.47407 * 330.00397 * 9 7 5 13 13 O 1.45203 * 109.47056 * 64.99887 * 3 2 1 14 14 C 1.34812 * 116.99910 * 261.89989 * 13 3 2 15 15 O 1.21556 * 120.00133 * 354.59101 * 14 13 3 16 16 C 1.47004 * 120.00059 * 174.59577 * 14 13 3 17 17 C 1.38485 * 126.89687 * 185.81829 * 16 14 13 18 18 C 1.39644 * 105.35934 * 179.97438 * 17 16 14 19 19 N 1.30875 * 107.87440 * 0.02562 * 18 17 16 20 20 N 1.28440 * 110.94797 * 359.74768 * 19 18 17 21 21 C 1.46502 * 125.19674 * 180.24539 * 20 19 18 22 22 C 1.53001 * 109.47131 * 276.00750 * 21 20 19 23 23 C 1.53776 * 113.61351 * 271.26881 * 22 21 20 24 24 C 1.53782 * 87.08049 * 220.01977 * 23 22 21 25 25 C 1.53778 * 87.08225 * 25.43383 * 24 23 22 26 26 H 1.08997 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46572 * 59.99819 * 1 2 3 28 28 H 1.08999 * 109.46508 * 300.00531 * 1 2 3 29 29 H 1.09006 * 109.46607 * 119.99994 * 2 1 3 30 30 H 1.08999 * 109.46508 * 239.99469 * 2 1 3 31 31 H 0.97000 * 119.99775 * 179.97438 * 8 7 5 32 32 H 1.08004 * 127.32136 * 359.96892 * 17 16 14 33 33 H 1.07999 * 126.05943 * 179.97438 * 18 17 16 34 34 H 1.08999 * 109.47017 * 36.01015 * 21 20 19 35 35 H 1.09003 * 109.47139 * 156.01098 * 21 20 19 36 36 H 1.08998 * 112.85017 * 42.57816 * 22 21 20 37 37 H 1.09000 * 113.61818 * 334.56896 * 23 22 21 38 38 H 1.09005 * 113.61320 * 105.47229 * 23 22 21 39 39 H 1.09009 * 113.61245 * 270.88504 * 24 23 22 40 40 H 1.08996 * 113.61217 * 139.98561 * 24 23 22 41 41 H 1.08996 * 113.61321 * 220.02035 * 25 24 23 42 42 H 1.08999 * 113.68850 * 89.12361 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5420 1.4442 -0.1239 6 1 4.1506 1.8058 0.6917 7 6 4.1391 0.9841 -1.2783 8 7 3.3979 0.5440 -2.2716 9 14 6.0008 0.9856 -1.4316 10 1 6.5395 -0.3057 -0.9340 11 1 6.3800 1.1640 -2.8562 12 1 6.5629 2.0996 -0.6264 13 8 1.6560 2.0916 1.2407 14 6 0.5536 2.8671 1.2099 15 8 -0.0129 3.0764 0.1551 16 6 0.0368 3.4596 2.4521 17 6 -1.1363 4.1794 2.6045 18 6 -1.1856 4.5243 3.9568 19 7 -0.1172 4.0371 4.5348 20 7 0.6152 3.4063 3.6890 21 6 1.8792 2.7351 4.0019 22 6 3.0196 3.7546 3.9700 23 6 3.6568 3.9229 2.5806 24 6 5.0145 3.9968 3.2989 25 6 4.3700 3.1830 4.4334 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 3.8179 0.2207 -3.0839 32 1 -1.8595 4.4226 1.8401 33 1 -1.9663 5.0931 4.4398 34 1 1.8179 2.2894 4.9947 35 1 2.0687 1.9550 3.2645 36 1 2.7574 4.6980 4.4488 37 1 3.5482 3.0467 1.9414 38 1 3.3761 4.8501 2.0810 39 1 5.2984 5.0074 3.5932 40 1 5.8126 3.4662 2.7798 41 1 4.6651 3.5130 5.4295 42 1 4.4558 2.1044 4.3020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870309765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:33 Heat of formation + Delta-G solvation = -1.756013 kcal Electronic energy + Delta-G solvation = -24862.451041 eV Core-core repulsion = 21423.793023 eV Total energy + Delta-G solvation = -3438.658018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.34782 -39.38216 -38.61245 -35.92470 -33.67388 -32.99648 -31.56923 -30.67682 -28.09353 -27.39929 -25.36961 -24.15397 -23.36353 -22.70049 -21.26712 -20.26120 -19.58309 -19.20436 -17.76634 -16.77190 -16.14621 -16.01099 -15.43838 -15.08930 -14.92165 -14.57172 -14.09083 -13.76401 -13.58535 -13.18699 -12.88449 -12.84723 -12.47257 -12.20857 -11.95147 -11.53872 -11.48107 -11.30849 -11.25608 -11.01589 -10.74167 -10.68148 -10.56760 -10.35245 -10.14762 -10.01893 -9.97426 -9.85750 -9.51934 -9.02520 -8.87047 -8.82234 -8.53953 -6.26749 -4.33743 1.44897 2.62841 2.76338 3.18606 3.24683 3.27119 3.41570 3.54105 4.26086 4.54089 4.78952 4.80852 4.89112 5.07131 5.10145 5.14280 5.33198 5.45607 5.55240 5.64401 5.76409 5.83461 5.96357 6.05151 6.08162 6.10189 6.14852 6.17790 6.30493 6.34211 6.44893 6.63296 6.74365 6.79899 6.84772 6.92986 7.02565 7.07841 7.52424 7.61170 7.78345 8.01517 8.17758 8.49194 8.77266 9.32060 10.81304 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.006821 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.446623 B = 4104.089760 C = 5530.597130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.217 3.783 4 H 0.058 0.942 5 C -0.524 4.524 6 H 0.072 0.928 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.905 3.095 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.353 6.353 14 C 0.530 3.470 15 O -0.498 6.498 16 C -0.013 4.013 17 C -0.168 4.168 18 C -0.013 4.013 19 N -0.279 5.279 20 N -0.255 5.255 21 C 0.118 3.882 22 C -0.127 4.127 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.126 4.126 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.044 0.956 30 H 0.100 0.900 31 H 0.267 0.733 32 H 0.162 0.838 33 H 0.185 0.815 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 4.098 11.625 12.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.165 3.835 4 H 0.076 0.924 5 C -0.562 4.562 6 H 0.090 0.910 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.732 3.268 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 O -0.270 6.270 14 C 0.372 3.628 15 O -0.386 6.386 16 C -0.139 4.139 17 C -0.197 4.197 18 C -0.188 4.188 19 N -0.113 5.113 20 N -0.044 5.044 21 C -0.001 4.001 22 C -0.146 4.146 23 C -0.182 4.182 24 C -0.179 4.179 25 C -0.164 4.164 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.179 0.821 33 H 0.202 0.798 34 H 0.113 0.887 35 H 0.146 0.854 36 H 0.109 0.891 37 H 0.141 0.859 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.806 3.893 12.099 12.838 hybrid contribution 0.380 0.093 -1.032 1.104 sum -1.427 3.986 11.066 11.849 Atomic orbital electron populations 1.21838 0.98532 0.99613 1.00549 1.21939 0.92551 0.99199 1.02885 1.20805 0.95272 0.88498 0.78943 0.92425 1.21031 0.89347 1.43975 1.01817 0.91031 1.24870 0.98972 0.94778 0.95046 1.69922 1.35450 1.41259 1.05533 0.86376 0.84219 0.78662 0.77554 1.20368 1.20994 1.19523 1.86505 1.39741 1.56920 1.43814 1.19569 0.79804 0.77161 0.86298 1.90834 1.58160 1.59006 1.30559 1.21123 0.97829 1.08560 0.86344 1.22138 0.97499 1.02196 0.97825 1.23495 0.97756 1.05012 0.92578 1.73104 1.05093 1.11274 1.21822 1.46003 1.17651 1.36620 1.04136 1.22509 0.77627 0.95576 1.04380 1.22943 0.93106 0.98656 0.99871 1.23385 0.94699 1.04645 0.95517 1.22754 0.97847 0.99813 0.97510 1.22837 0.94451 1.00657 0.98422 0.94259 0.92866 0.95005 0.93706 0.88137 0.92320 0.82059 0.79815 0.88666 0.85439 0.89131 0.85942 0.92340 0.90883 0.91026 0.91583 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.08 37.16 0.34 -2.69 16 2 C -0.13 -2.91 5.53 -26.73 -0.15 -3.06 16 3 C 0.22 5.27 2.13 -27.89 -0.06 5.21 16 4 H 0.06 1.61 6.85 -51.93 -0.36 1.25 16 5 C -0.52 -13.28 8.58 -34.44 -0.30 -13.58 16 6 H 0.07 1.74 6.01 -52.49 -0.32 1.43 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.88 -23.91 11.73 55.43 0.65 -23.25 16 9 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 O -0.35 -7.49 4.97 -40.80 -0.20 -7.70 16 14 C 0.53 11.02 6.41 34.28 0.22 11.24 16 15 O -0.50 -11.60 15.55 -19.31 -0.30 -11.90 16 16 C -0.01 -0.22 6.96 -82.08 -0.57 -0.79 16 17 C -0.17 -2.59 10.85 -38.97 -0.42 -3.01 16 18 C -0.01 -0.18 12.03 -17.43 -0.21 -0.39 16 19 N -0.28 -4.28 11.90 30.58 0.36 -3.91 16 20 N -0.25 -4.09 3.35 -57.15 -0.19 -4.28 16 21 C 0.12 1.69 5.86 -4.04 -0.02 1.67 16 22 C -0.13 -1.72 3.96 -89.81 -0.36 -2.08 16 23 C -0.15 -2.32 7.40 -25.92 -0.19 -2.51 16 24 C -0.14 -1.90 8.08 -25.92 -0.21 -2.11 16 25 C -0.13 -1.50 7.64 -25.92 -0.20 -1.69 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.03 0.63 6.75 -51.93 -0.35 0.28 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 2.51 6.44 -51.93 -0.33 2.18 16 31 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.16 2.22 8.06 -52.48 -0.42 1.80 16 33 H 0.18 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.13 2.01 5.41 -51.93 -0.28 1.73 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.12 2.29 3.78 -51.93 -0.20 2.10 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -28.17 339.21 -7.85 -36.02 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.04 Total: 7.12 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.22 Total: -12.18 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.82 Total: -31.45 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.50 Total: -19.60 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.17 -7.85 -36.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870309765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.265 kcal (2) G-P(sol) polarization free energy of solvation -28.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds