Wall clock time and date at job start Tue Mar 31 2020 06:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 H 1.09004 * 109.46563 * 305.00153 * 3 2 1 5 5 C 1.50697 * 109.47311 * 185.00283 * 3 2 1 6 6 H 1.08001 * 119.99695 * 245.63274 * 5 3 2 7 7 C 1.37878 * 120.00393 * 65.62382 * 5 3 2 8 8 N 1.31513 * 119.99425 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00181 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46947 * 90.00573 * 9 7 5 11 11 H 1.48496 * 109.47028 * 210.00143 * 9 7 5 12 12 H 1.48501 * 109.47407 * 330.00397 * 9 7 5 13 13 O 1.45203 * 109.47056 * 64.99887 * 3 2 1 14 14 C 1.34812 * 116.99910 * 261.89989 * 13 3 2 15 15 O 1.21556 * 120.00133 * 354.59101 * 14 13 3 16 16 C 1.47004 * 120.00059 * 174.59577 * 14 13 3 17 17 C 1.38485 * 126.89687 * 185.81829 * 16 14 13 18 18 C 1.39644 * 105.35934 * 179.97438 * 17 16 14 19 19 N 1.30875 * 107.87440 * 0.02562 * 18 17 16 20 20 N 1.28440 * 110.94797 * 359.74768 * 19 18 17 21 21 C 1.46502 * 125.19674 * 180.24539 * 20 19 18 22 22 C 1.53001 * 109.47131 * 276.00750 * 21 20 19 23 23 C 1.53776 * 113.61351 * 271.26881 * 22 21 20 24 24 C 1.53782 * 87.08049 * 220.01977 * 23 22 21 25 25 C 1.53778 * 87.08225 * 25.43383 * 24 23 22 26 26 H 1.08997 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46572 * 59.99819 * 1 2 3 28 28 H 1.08999 * 109.46508 * 300.00531 * 1 2 3 29 29 H 1.09006 * 109.46607 * 119.99994 * 2 1 3 30 30 H 1.08999 * 109.46508 * 239.99469 * 2 1 3 31 31 H 0.97000 * 119.99775 * 179.97438 * 8 7 5 32 32 H 1.08004 * 127.32136 * 359.96892 * 17 16 14 33 33 H 1.07999 * 126.05943 * 179.97438 * 18 17 16 34 34 H 1.08999 * 109.47017 * 36.01015 * 21 20 19 35 35 H 1.09003 * 109.47139 * 156.01098 * 21 20 19 36 36 H 1.08998 * 112.85017 * 42.57816 * 22 21 20 37 37 H 1.09000 * 113.61818 * 334.56896 * 23 22 21 38 38 H 1.09005 * 113.61320 * 105.47229 * 23 22 21 39 39 H 1.09009 * 113.61245 * 270.88504 * 24 23 22 40 40 H 1.08996 * 113.61217 * 139.98561 * 24 23 22 41 41 H 1.08996 * 113.61321 * 220.02035 * 25 24 23 42 42 H 1.08999 * 113.68850 * 89.12361 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5420 1.4442 -0.1239 6 1 4.1506 1.8058 0.6917 7 6 4.1391 0.9841 -1.2783 8 7 3.3979 0.5440 -2.2716 9 14 6.0008 0.9856 -1.4316 10 1 6.5395 -0.3057 -0.9340 11 1 6.3800 1.1640 -2.8562 12 1 6.5629 2.0996 -0.6264 13 8 1.6560 2.0916 1.2407 14 6 0.5536 2.8671 1.2099 15 8 -0.0129 3.0764 0.1551 16 6 0.0368 3.4596 2.4521 17 6 -1.1363 4.1794 2.6045 18 6 -1.1856 4.5243 3.9568 19 7 -0.1172 4.0371 4.5348 20 7 0.6152 3.4063 3.6890 21 6 1.8792 2.7351 4.0019 22 6 3.0196 3.7546 3.9700 23 6 3.6568 3.9229 2.5806 24 6 5.0145 3.9968 3.2989 25 6 4.3700 3.1830 4.4334 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 3.8179 0.2207 -3.0839 32 1 -1.8595 4.4226 1.8401 33 1 -1.9663 5.0931 4.4398 34 1 1.8179 2.2894 4.9947 35 1 2.0687 1.9550 3.2645 36 1 2.7574 4.6980 4.4488 37 1 3.5482 3.0467 1.9414 38 1 3.3761 4.8501 2.0810 39 1 5.2984 5.0074 3.5932 40 1 5.8126 3.4662 2.7798 41 1 4.6651 3.5130 5.4295 42 1 4.4558 2.1044 4.3020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870309765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:32 Heat of formation + Delta-G solvation = -15.446261 kcal Electronic energy + Delta-G solvation = -24863.044694 eV Core-core repulsion = 21423.793023 eV Total energy + Delta-G solvation = -3439.251672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.57580 -41.08990 -39.72931 -37.70228 -35.49664 -34.23982 -33.43084 -32.01489 -29.36168 -29.17038 -26.48887 -25.81829 -24.74530 -24.18480 -22.47240 -22.00532 -21.10420 -20.35334 -19.22182 -18.62558 -17.80766 -17.43858 -16.72949 -16.62971 -16.28872 -16.21541 -15.31955 -15.12255 -14.96858 -14.71412 -14.56541 -14.11491 -14.00979 -13.53082 -13.36650 -13.26967 -13.02235 -12.92767 -12.78353 -12.56619 -12.42129 -12.12849 -12.01355 -11.81673 -11.63549 -11.59219 -11.38344 -11.31709 -11.13190 -10.78163 -10.51255 -10.27118 -10.00006 -8.25446 -6.39086 0.04037 1.40055 1.42829 1.43919 1.53513 1.58795 1.84574 1.99925 2.41034 3.07182 3.38255 3.68490 3.71195 3.73837 3.82710 3.99607 4.21141 4.29066 4.35015 4.36096 4.38843 4.48999 4.53150 4.58483 4.83860 4.84185 4.87549 4.92028 4.97770 5.05116 5.10541 5.10948 5.18705 5.28213 5.31235 5.46704 5.53042 5.64718 5.73469 5.74165 5.88581 6.07329 6.62720 6.84657 7.04429 7.31039 8.82999 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.006821 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.446623 B = 4104.089760 C = 5530.597130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.223 3.777 4 H 0.013 0.987 5 C -0.536 4.536 6 H 0.077 0.923 7 C 0.020 3.980 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.263 1.263 13 O -0.343 6.343 14 C 0.528 3.472 15 O -0.534 6.534 16 C -0.047 4.047 17 C -0.162 4.162 18 C 0.001 3.999 19 N -0.280 5.280 20 N -0.255 5.255 21 C 0.115 3.885 22 C -0.115 4.115 23 C -0.160 4.160 24 C -0.138 4.138 25 C -0.111 4.111 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.268 0.732 32 H 0.174 0.826 33 H 0.229 0.771 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.038 0.962 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 4.551 14.446 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.170 3.830 4 H 0.031 0.969 5 C -0.573 4.573 6 H 0.095 0.905 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.188 1.188 13 O -0.259 6.259 14 C 0.373 3.627 15 O -0.423 6.423 16 C -0.173 4.173 17 C -0.190 4.190 18 C -0.174 4.174 19 N -0.114 5.114 20 N -0.045 5.045 21 C -0.004 4.004 22 C -0.134 4.134 23 C -0.198 4.198 24 C -0.175 4.175 25 C -0.149 4.149 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.191 0.809 33 H 0.246 0.754 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.057 0.943 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.564 4.343 14.948 15.644 hybrid contribution 0.208 0.038 -1.880 1.892 sum -1.356 4.381 13.068 13.849 Atomic orbital electron populations 1.21704 0.96735 1.01166 0.99717 1.21784 0.94122 0.97919 1.02125 1.20483 0.94861 0.88956 0.78710 0.96908 1.21342 0.90058 1.43742 1.02180 0.90482 1.25700 1.03342 0.94341 0.94651 1.70054 1.37244 1.42149 1.06025 0.85396 0.78910 0.79155 0.77341 1.19261 1.21137 1.18763 1.86530 1.40355 1.57075 1.41926 1.20078 0.78999 0.76439 0.87203 1.90809 1.59043 1.60306 1.32145 1.20947 0.99508 1.10828 0.85974 1.22498 0.96557 1.00746 0.99241 1.24190 0.97771 1.03900 0.91515 1.73131 1.05511 1.11102 1.21628 1.46133 1.18096 1.36852 1.03442 1.22604 0.77372 0.95341 1.05105 1.22869 0.93710 0.98832 0.98037 1.23325 0.97697 1.02236 0.96506 1.22778 0.96108 1.01075 0.97586 1.22792 0.92370 1.00535 0.99177 0.91400 0.94720 0.94742 0.92666 0.90455 0.92327 0.80872 0.75434 0.85958 0.87383 0.88707 0.89005 0.94302 0.89251 0.91760 0.88804 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 9.08 71.98 0.65 -5.01 16 2 C -0.12 -5.71 5.53 30.60 0.17 -5.54 16 3 C 0.22 11.35 2.13 29.85 0.06 11.41 16 4 H 0.01 0.78 6.85 -2.38 -0.02 0.76 16 5 C -0.54 -28.06 8.58 25.60 0.22 -27.84 16 6 H 0.08 3.86 6.01 -2.91 -0.02 3.85 16 7 C 0.02 1.03 5.30 84.66 0.45 1.48 16 8 N -0.92 -51.27 11.73 21.45 0.25 -51.02 16 9 Si 0.97 41.41 29.54 68.60 2.03 43.44 16 10 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 O -0.34 -15.15 4.97 -57.24 -0.28 -15.44 16 14 C 0.53 22.78 6.41 70.12 0.45 23.22 16 15 O -0.53 -26.09 15.55 19.65 0.31 -25.78 16 16 C -0.05 -1.67 6.96 40.75 0.28 -1.39 16 17 C -0.16 -4.71 10.85 22.67 0.25 -4.46 16 18 C 0.00 0.01 12.03 85.17 1.02 1.04 16 19 N -0.28 -7.78 11.90 -57.15 -0.68 -8.46 16 20 N -0.26 -7.84 3.35 -334.73 -1.12 -8.96 16 21 C 0.11 3.13 5.86 86.38 0.51 3.63 16 22 C -0.12 -2.97 3.96 -10.27 -0.04 -3.01 16 23 C -0.16 -5.16 7.40 31.12 0.23 -4.93 16 24 C -0.14 -3.51 8.08 31.12 0.25 -3.26 16 25 C -0.11 -2.36 7.64 31.12 0.24 -2.12 16 26 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.03 1.38 6.75 -2.39 -0.02 1.37 16 29 H 0.05 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.08 4.02 6.44 -2.39 -0.02 4.00 16 31 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.17 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.23 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.11 3.40 5.41 -2.39 -0.01 3.39 16 36 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.09 3.57 3.78 -2.39 -0.01 3.56 16 38 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.09 1.90 8.10 -2.39 -0.02 1.88 16 Total: -1.00 -63.49 339.21 6.26 -57.23 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 1.02 Total: 25.75 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 4.74 Total: -16.76 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -1.55 Total: -68.44 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: 0.02 Total: -41.22 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -63.49 6.26 -57.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870309765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.780 kcal (2) G-P(sol) polarization free energy of solvation -63.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds