Wall clock time and date at job start Tue Mar 31 2020 06:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34748 * 117.00365 * 89.99983 * 13 3 2 15 15 O 1.21528 * 120.00230 * 359.97438 * 14 13 3 16 16 C 1.47284 * 120.00147 * 180.02562 * 14 13 3 17 17 C 1.38128 * 126.42487 * 0.02562 * 16 14 13 18 18 N 1.34229 * 107.40690 * 179.97438 * 17 16 14 19 19 C 1.46495 * 125.74380 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46935 * 125.00185 * 19 18 17 21 21 N 1.39927 * 108.51328 * 0.02562 * 18 17 16 22 22 C 1.30435 * 108.92170 * 359.72960 * 21 18 17 23 23 C 1.50700 * 125.99778 * 180.24154 * 22 21 18 24 24 C 1.53000 * 117.49674 * 8.82115 * 23 22 21 25 25 C 1.52993 * 60.00011 * 252.51328 * 24 23 22 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 32 32 H 1.07996 * 126.30006 * 359.97438 * 17 16 14 33 33 H 1.08998 * 109.47831 * 245.00463 * 19 18 17 34 34 H 1.09006 * 109.47093 * 5.00827 * 19 18 17 35 35 H 1.08997 * 109.46968 * 180.02562 * 20 19 18 36 36 H 1.08993 * 109.47181 * 300.00012 * 20 19 18 37 37 H 1.09006 * 109.46706 * 60.00404 * 20 19 18 38 38 H 1.08992 * 115.54923 * 154.52865 * 23 22 21 39 39 H 1.08999 * 117.49829 * 0.02562 * 24 23 22 40 40 H 1.09001 * 117.49326 * 145.01557 * 24 23 22 41 41 H 1.09009 * 117.49947 * 252.51252 * 25 24 23 42 42 H 1.09000 * 117.52485 * 107.48612 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4681 2.7280 -1.2559 15 8 -0.2279 2.7396 -0.2597 16 6 0.0128 3.4084 -2.4802 17 6 0.6919 3.4774 -3.6811 18 7 -0.0677 4.1852 -4.5319 19 6 0.2719 4.5025 -5.9212 20 6 -0.8530 4.0264 -6.8426 21 7 -1.2379 4.5699 -3.8681 22 6 -1.2034 4.1088 -2.6485 23 6 -2.2712 4.2934 -1.6012 24 6 -3.5985 4.9102 -2.0468 25 6 -2.6232 5.7262 -1.1963 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0605 2.9501 32 1 1.6565 3.0420 -3.8960 33 1 0.3972 5.5800 -6.0277 34 1 1.2006 4.0001 -6.1921 35 1 -0.6002 4.2621 -7.8763 36 1 -0.9783 2.9489 -6.7362 37 1 -1.7817 4.5287 -6.5717 38 1 -2.3066 3.5281 -0.8259 39 1 -3.6996 5.1820 -3.0976 40 1 -4.5076 4.5505 -1.5648 41 1 -2.8905 5.9035 -0.1544 42 1 -2.0821 6.5353 -1.6869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870309812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:10 Heat of formation + Delta-G solvation = 2.379642 kcal Electronic energy + Delta-G solvation = -23686.856576 eV Core-core repulsion = 20248.377893 eV Total energy + Delta-G solvation = -3438.478683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34394 -39.03864 -37.10912 -35.50760 -34.27635 -33.39655 -31.33635 -30.40941 -29.67673 -27.17717 -24.73621 -23.83107 -22.79061 -22.28026 -21.81392 -20.55439 -19.36304 -18.93456 -17.39619 -16.47349 -16.34367 -15.85577 -15.27444 -15.10043 -14.90927 -14.60989 -14.41401 -13.98376 -13.21258 -12.86374 -12.78733 -12.76965 -12.38237 -11.93602 -11.83304 -11.71788 -11.45539 -11.38012 -11.24735 -11.11498 -10.92443 -10.86061 -10.72086 -10.58322 -10.26732 -10.22826 -9.70394 -9.42727 -9.26531 -9.10936 -8.72251 -8.50302 -8.38692 -6.14271 -4.20869 1.66175 2.22587 2.30348 3.26302 3.31894 3.35319 3.81008 3.89127 4.11763 4.24833 4.40500 4.58530 4.66994 4.77364 4.92554 5.01061 5.12564 5.17731 5.21623 5.31277 5.47371 5.66196 5.71989 5.73884 5.84009 5.92245 6.11072 6.21793 6.31670 6.36519 6.39257 6.51824 6.61184 6.87932 6.96978 7.06933 7.25813 7.36338 7.66902 7.68104 7.81527 8.04681 8.23118 8.75281 9.02029 9.44332 10.92527 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.004305 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.083411 B = 6502.336271 C = 7373.776806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.909 3.091 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.357 6.357 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.261 4.261 17 C 0.121 3.879 18 N -0.364 5.364 19 C 0.128 3.872 20 C -0.165 4.165 21 N -0.303 5.303 22 C 0.163 3.837 23 C -0.080 4.080 24 C -0.170 4.170 25 C -0.159 4.159 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.107 0.893 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.192 0.808 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.349 7.337 -14.492 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.736 3.264 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 O -0.274 6.274 14 C 0.375 3.625 15 O -0.409 6.409 16 C -0.274 4.274 17 C -0.030 4.030 18 N -0.143 5.143 19 C 0.007 3.993 20 C -0.223 4.223 21 N -0.124 5.124 22 C -0.004 4.004 23 C -0.100 4.100 24 C -0.207 4.207 25 C -0.197 4.197 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.125 0.875 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.208 0.792 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.158 0.842 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.104 7.905 -15.035 19.273 hybrid contribution 1.584 -0.614 0.733 1.850 sum -7.520 7.291 -14.303 17.728 Atomic orbital electron populations 1.21855 0.98334 0.98842 1.00931 1.22004 0.92698 0.99424 1.03151 1.20623 0.94772 0.88684 0.78820 0.93464 1.21042 0.89806 1.38765 1.06160 0.91469 1.24868 0.99061 0.94852 0.95135 1.69895 1.35279 1.37923 1.09426 0.86317 0.84129 0.77660 0.78269 1.20458 1.20993 1.19682 1.86505 1.34006 1.62847 1.44011 1.19802 0.80579 0.76037 0.86064 1.90731 1.55677 1.59534 1.34972 1.19606 0.98544 1.14481 0.94781 1.23327 0.97335 0.93078 0.89213 1.48437 1.14443 1.40464 1.10959 1.21784 0.99371 1.02291 0.75814 1.22053 0.99040 1.02432 0.98766 1.76989 1.03879 1.24847 1.06660 1.21398 0.93479 0.93738 0.91767 1.20536 0.92595 0.98833 0.97996 1.22983 0.93011 1.03855 1.00844 1.22938 1.02790 0.93275 1.00729 0.92767 0.95032 0.94765 0.87471 0.94158 0.92456 0.79156 0.89515 0.88184 0.90657 0.91907 0.91040 0.84205 0.88324 0.88432 0.88089 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.56 37.16 0.32 -2.87 16 2 C -0.13 -3.38 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.97 2.25 -27.88 -0.06 5.91 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.50 8.90 -34.44 -0.31 -14.81 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.08 11.29 55.43 0.63 -24.46 16 9 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 O -0.36 -8.56 9.63 -40.62 -0.39 -8.95 16 14 C 0.53 11.68 6.40 34.41 0.22 11.90 16 15 O -0.52 -12.26 12.18 -19.29 -0.24 -12.50 16 16 C -0.26 -4.75 6.13 -105.08 -0.64 -5.40 16 17 C 0.12 1.76 11.29 -16.54 -0.19 1.57 16 18 N -0.36 -4.69 3.65 -60.79 -0.22 -4.91 16 19 C 0.13 1.03 7.21 -4.04 -0.03 1.00 16 20 C -0.17 -1.21 10.09 37.16 0.37 -0.84 16 21 N -0.30 -4.58 11.91 33.90 0.40 -4.17 16 22 C 0.16 2.73 6.80 -82.00 -0.56 2.17 16 23 C -0.08 -1.22 5.65 -91.77 -0.52 -1.74 16 24 C -0.17 -2.05 10.14 -26.73 -0.27 -2.32 16 25 C -0.16 -2.05 10.23 -26.74 -0.27 -2.32 16 26 H 0.05 1.26 7.79 -51.93 -0.40 0.86 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.75 6.06 -51.93 -0.31 0.43 16 29 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.19 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.56 8.06 -51.93 -0.42 0.14 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.14 2.37 6.73 -51.93 -0.35 2.02 16 39 H 0.10 1.19 7.90 -51.93 -0.41 0.78 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -31.92 351.07 -8.08 -40.00 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.35 Total: 3.39 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.18 Total: -9.64 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.81 Total: -33.54 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.63 Total: -21.45 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.92 -8.08 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870309812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.377 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds