Wall clock time and date at job start Tue Mar 31 2020 06:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34748 * 117.00365 * 89.99983 * 13 3 2 15 15 O 1.21528 * 120.00230 * 359.97438 * 14 13 3 16 16 C 1.47284 * 120.00147 * 180.02562 * 14 13 3 17 17 C 1.38128 * 126.42487 * 0.02562 * 16 14 13 18 18 N 1.34229 * 107.40690 * 179.97438 * 17 16 14 19 19 C 1.46495 * 125.74380 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46935 * 125.00185 * 19 18 17 21 21 N 1.39927 * 108.51328 * 0.02562 * 18 17 16 22 22 C 1.30435 * 108.92170 * 359.72960 * 21 18 17 23 23 C 1.50700 * 125.99778 * 180.24154 * 22 21 18 24 24 C 1.53000 * 117.49674 * 8.82115 * 23 22 21 25 25 C 1.52993 * 60.00011 * 252.51328 * 24 23 22 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 32 32 H 1.07996 * 126.30006 * 359.97438 * 17 16 14 33 33 H 1.08998 * 109.47831 * 245.00463 * 19 18 17 34 34 H 1.09006 * 109.47093 * 5.00827 * 19 18 17 35 35 H 1.08997 * 109.46968 * 180.02562 * 20 19 18 36 36 H 1.08993 * 109.47181 * 300.00012 * 20 19 18 37 37 H 1.09006 * 109.46706 * 60.00404 * 20 19 18 38 38 H 1.08992 * 115.54923 * 154.52865 * 23 22 21 39 39 H 1.08999 * 117.49829 * 0.02562 * 24 23 22 40 40 H 1.09001 * 117.49326 * 145.01557 * 24 23 22 41 41 H 1.09009 * 117.49947 * 252.51252 * 25 24 23 42 42 H 1.09000 * 117.52485 * 107.48612 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4681 2.7280 -1.2559 15 8 -0.2279 2.7396 -0.2597 16 6 0.0128 3.4084 -2.4802 17 6 0.6919 3.4774 -3.6811 18 7 -0.0677 4.1852 -4.5319 19 6 0.2719 4.5025 -5.9212 20 6 -0.8530 4.0264 -6.8426 21 7 -1.2379 4.5699 -3.8681 22 6 -1.2034 4.1088 -2.6485 23 6 -2.2712 4.2934 -1.6012 24 6 -3.5985 4.9102 -2.0468 25 6 -2.6232 5.7262 -1.1963 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0605 2.9501 32 1 1.6565 3.0420 -3.8960 33 1 0.3972 5.5800 -6.0277 34 1 1.2006 4.0001 -6.1921 35 1 -0.6002 4.2621 -7.8763 36 1 -0.9783 2.9489 -6.7362 37 1 -1.7817 4.5287 -6.5717 38 1 -2.3066 3.5281 -0.8259 39 1 -3.6996 5.1820 -3.0976 40 1 -4.5076 4.5505 -1.5648 41 1 -2.8905 5.9035 -0.1544 42 1 -2.0821 6.5353 -1.6869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870309812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:09 Heat of formation + Delta-G solvation = -14.995558 kcal Electronic energy + Delta-G solvation = -23687.610021 eV Core-core repulsion = 20248.377893 eV Total energy + Delta-G solvation = -3439.232128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.54001 -40.81396 -38.19712 -37.34071 -35.42646 -35.12784 -33.33165 -31.61516 -30.74500 -29.19984 -25.67258 -25.56235 -24.48086 -23.28125 -22.78591 -22.21362 -21.13552 -20.15460 -18.97249 -18.29469 -17.87653 -17.09123 -16.92425 -16.53913 -16.18641 -16.05920 -15.67969 -14.99187 -14.79166 -14.64852 -14.19215 -13.94187 -13.43663 -13.32823 -13.25441 -13.10598 -13.05400 -12.82821 -12.75898 -12.58219 -12.46925 -12.41205 -12.10556 -11.89398 -11.74696 -11.71059 -11.49686 -11.32494 -11.00542 -10.75078 -10.48541 -10.23482 -9.72407 -8.23274 -6.39741 0.40882 0.92636 1.31725 1.44048 1.45675 1.57148 2.17688 2.26273 2.49557 3.00536 3.06527 3.24826 3.51796 3.88039 3.96254 4.07960 4.10236 4.16100 4.32885 4.37739 4.42318 4.44050 4.45728 4.57424 4.70481 4.73849 4.80746 4.86081 4.90523 4.95065 5.12886 5.17742 5.21583 5.25290 5.27238 5.35921 5.47323 5.56760 5.72227 5.86706 6.03906 6.20211 6.48338 6.66493 7.14486 7.33776 8.83700 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.004305 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.083411 B = 6502.336271 C = 7373.776806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.228 3.772 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.261 1.261 13 O -0.361 6.361 14 C 0.527 3.473 15 O -0.546 6.546 16 C -0.306 4.306 17 C 0.141 3.859 18 N -0.350 5.350 19 C 0.114 3.886 20 C -0.160 4.160 21 N -0.306 5.306 22 C 0.156 3.844 23 C -0.113 4.113 24 C -0.143 4.143 25 C -0.153 4.153 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.033 0.967 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.269 0.731 32 H 0.218 0.782 33 H 0.104 0.896 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 7.917 -16.913 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.175 3.825 4 H 0.022 0.978 5 C -0.585 4.585 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.185 1.185 13 O -0.278 6.278 14 C 0.373 3.627 15 O -0.438 6.438 16 C -0.319 4.319 17 C -0.012 4.012 18 N -0.127 5.127 19 C -0.004 4.004 20 C -0.218 4.218 21 N -0.127 5.127 22 C -0.010 4.010 23 C -0.133 4.133 24 C -0.180 4.180 25 C -0.191 4.191 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.235 0.765 33 H 0.122 0.878 34 H 0.151 0.849 35 H 0.124 0.876 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.448 8.509 -17.503 21.216 hybrid contribution 1.318 -0.729 1.379 2.042 sum -7.129 7.780 -16.124 19.270 Atomic orbital electron populations 1.21693 0.96494 1.00317 1.00037 1.21849 0.94272 0.98222 1.02235 1.20324 0.94435 0.89114 0.78649 0.97770 1.21334 0.90459 1.39764 1.06909 0.91454 1.25792 1.04128 0.93937 0.94389 1.70026 1.37398 1.38057 1.09836 0.85224 0.77832 0.77872 0.78728 1.19986 1.20161 1.18520 1.86479 1.35417 1.63417 1.42440 1.20435 0.79513 0.75491 0.87234 1.90707 1.56101 1.60603 1.36409 1.19527 1.00513 1.17160 0.94693 1.23632 0.97682 0.91758 0.88118 1.48928 1.13128 1.38488 1.12196 1.22363 1.01039 1.03950 0.73036 1.22029 0.98008 1.01449 1.00285 1.76956 1.04980 1.24893 1.05908 1.21552 0.93316 0.93660 0.92487 1.20484 0.94819 0.99730 0.98315 1.23044 0.92261 1.01609 1.01058 1.23010 1.02672 0.91786 1.01623 0.94555 0.92203 0.94744 0.89591 0.93577 0.92130 0.76515 0.87814 0.84899 0.87595 0.92940 0.92727 0.86746 0.87927 0.86447 0.87058 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.56 71.98 0.62 -5.27 16 2 C -0.13 -6.59 5.49 30.59 0.17 -6.42 16 3 C 0.23 12.69 2.25 29.85 0.07 12.75 16 4 H 0.00 0.28 7.16 -2.38 -0.02 0.27 16 5 C -0.55 -31.18 8.90 25.60 0.23 -30.95 16 6 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.92 -52.84 11.29 21.45 0.24 -52.60 16 9 Si 0.98 42.87 29.54 68.60 2.03 44.89 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 O -0.36 -17.85 9.63 -56.58 -0.55 -18.40 16 14 C 0.53 24.15 6.40 70.20 0.45 24.59 16 15 O -0.55 -27.45 12.18 19.75 0.24 -27.21 16 16 C -0.31 -11.27 6.13 -20.16 -0.12 -11.40 16 17 C 0.14 3.91 11.29 84.30 0.95 4.86 16 18 N -0.35 -8.25 3.65 -346.25 -1.26 -9.52 16 19 C 0.11 1.44 7.21 86.38 0.62 2.06 16 20 C -0.16 -1.88 10.09 71.98 0.73 -1.15 16 21 N -0.31 -8.91 11.91 -46.65 -0.56 -9.46 16 22 C 0.16 5.27 6.80 43.53 0.30 5.56 16 23 C -0.11 -3.56 5.65 -11.54 -0.07 -3.63 16 24 C -0.14 -3.31 10.14 30.59 0.31 -3.00 16 25 C -0.15 -3.89 10.23 30.59 0.31 -3.57 16 26 H 0.04 1.76 7.79 -2.39 -0.02 1.74 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.03 1.55 6.06 -2.38 -0.01 1.53 16 29 H 0.09 4.81 5.95 -2.39 -0.01 4.80 16 30 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 32 H 0.22 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.13 0.87 8.06 -2.38 -0.02 0.85 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.11 4.15 6.73 -2.39 -0.02 4.14 16 39 H 0.10 2.31 7.90 -2.39 -0.02 2.30 16 40 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 42 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -72.22 351.07 6.16 -66.06 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 1.01 Total: 20.40 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 5.01 Total: -14.16 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -1.58 Total: -71.58 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.30 Total: -45.60 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -72.22 6.16 -66.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870309812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.063 kcal (2) G-P(sol) polarization free energy of solvation -72.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds