Wall clock time and date at job start Tue Mar 31 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47298 * 2 1 4 4 H 1.09002 * 109.46916 * 305.00751 * 3 2 1 5 5 N 1.46500 * 109.46837 * 65.00184 * 3 2 1 6 6 C 1.34773 * 120.00431 * 275.00470 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50701 * 109.46923 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00145 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00027 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00241 * 180.02562 * 12 10 9 14 14 Si 1.86809 * 119.99866 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.46710 * 90.00048 * 14 12 10 16 16 H 1.48500 * 109.46865 * 209.99357 * 14 12 10 17 17 H 1.48491 * 109.47392 * 329.99819 * 14 12 10 18 18 C 1.52995 * 109.47295 * 185.00367 * 3 2 1 19 19 H 1.09007 * 109.46938 * 65.00437 * 18 3 2 20 20 O 1.42897 * 109.47309 * 305.00101 * 18 3 2 21 21 C 1.50701 * 109.47091 * 184.99892 * 18 3 2 22 22 C 1.38233 * 119.99687 * 84.73133 * 21 18 3 23 23 C 1.38235 * 119.99919 * 179.81096 * 22 21 18 24 24 C 1.38233 * 120.00037 * 0.39397 * 23 22 21 25 25 C 1.38240 * 119.99887 * 359.85766 * 24 23 22 26 26 C 1.38232 * 119.99975 * 359.95594 * 25 24 23 27 27 H 1.09005 * 109.46888 * 299.99223 * 1 2 3 28 28 H 1.08998 * 109.47562 * 59.99306 * 1 2 3 29 29 H 1.08999 * 109.47396 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46888 * 240.00777 * 2 1 3 31 31 H 1.08993 * 109.47875 * 120.00371 * 2 1 3 32 32 H 0.97000 * 119.99456 * 95.00032 * 5 3 2 33 33 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 34 34 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 35 35 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 36 36 H 0.97003 * 119.99905 * 179.97438 * 13 12 10 37 37 H 0.96693 * 114.00253 * 300.00476 * 20 18 3 38 38 H 1.08006 * 120.00056 * 359.97438 * 22 21 18 39 39 H 1.08006 * 119.99885 * 180.22594 * 23 22 21 40 40 H 1.07995 * 120.00296 * 179.83249 * 24 23 22 41 41 H 1.08000 * 119.99820 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.00194 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6643 1.3672 7 8 -0.3413 2.6326 0.4320 8 7 0.0767 3.2620 2.5207 9 6 -1.2488 3.8729 2.6481 10 6 -1.3978 4.4673 4.0249 11 1 -0.5865 4.3967 4.7342 12 6 -2.5697 5.1012 4.3789 13 7 -2.6996 5.6204 5.5802 14 14 -3.9734 5.2227 3.1522 15 1 -4.8604 4.0404 3.2964 16 1 -4.7520 6.4602 3.4119 17 1 -3.4236 5.2639 1.7734 18 6 3.5648 1.4444 -0.1258 19 1 3.8498 1.0378 -1.0962 20 8 4.1294 0.6404 0.9119 21 6 4.0773 2.8562 -0.0026 22 6 4.3069 3.4016 1.2467 23 6 4.7807 4.6953 1.3596 24 6 5.0172 5.4464 0.2235 25 6 4.7827 4.9028 -1.0257 26 6 4.3125 3.6078 -1.1387 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8898 32 1 2.2721 2.1231 1.9978 33 1 0.6963 3.2876 3.2666 34 1 -1.3609 4.6570 1.8993 35 1 -2.0152 3.1130 2.4959 36 1 -3.5241 6.0667 5.8292 37 1 3.9164 0.9443 1.8048 38 1 4.1186 2.8160 2.1344 39 1 4.9635 5.1201 2.3356 40 1 5.3848 6.4580 0.3118 41 1 4.9671 5.4898 -1.9133 42 1 4.1289 3.1832 -2.1146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875541038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:24 Heat of formation + Delta-G solvation = -60.454140 kcal Electronic energy + Delta-G solvation = -23878.076434 eV Core-core repulsion = 20436.873074 eV Total energy + Delta-G solvation = -3441.203360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.49018 -39.10728 -37.46401 -34.95469 -34.01469 -32.58872 -31.82368 -31.65499 -30.93293 -28.31317 -27.30967 -24.13191 -22.84096 -22.30599 -21.34011 -20.79990 -20.19145 -18.56186 -17.73962 -16.70050 -16.43232 -15.95263 -15.42452 -15.31555 -15.07663 -14.59874 -14.22031 -14.00962 -13.82332 -13.50475 -13.41957 -13.09228 -12.97913 -12.50249 -12.34972 -12.15389 -11.99987 -11.70339 -11.48280 -11.24231 -11.13907 -10.91372 -10.77491 -10.63272 -10.24001 -9.95677 -9.54811 -9.43468 -9.07080 -8.88968 -8.76847 -8.71379 -8.00616 -6.20468 -4.22151 1.18071 1.26891 3.17775 3.28200 3.35421 3.43662 3.60300 3.82144 4.15424 4.32034 4.34675 4.64439 4.69358 4.81299 4.93664 4.96989 5.14655 5.15448 5.20335 5.27035 5.35498 5.49127 5.61567 5.79010 5.83326 5.87308 6.01600 6.14968 6.30161 6.34974 6.36715 6.38975 6.70371 6.74166 6.77237 6.83955 7.12796 7.24671 7.26037 7.42189 7.54853 8.28520 8.69319 8.82095 9.22959 9.41615 10.91546 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.004605 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.686332 B = 6078.727344 C = 7121.268142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.139 3.861 4 H 0.096 0.904 5 N -0.747 5.747 6 C 0.698 3.302 7 O -0.596 6.596 8 N -0.723 5.723 9 C 0.240 3.760 10 C -0.541 4.541 11 H 0.078 0.922 12 C 0.078 3.922 13 N -0.894 5.894 14 Si 0.876 3.124 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.260 1.260 18 C 0.141 3.859 19 H 0.119 0.881 20 O -0.548 6.548 21 C -0.110 4.110 22 C -0.107 4.107 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.111 4.111 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.384 0.616 33 H 0.390 0.610 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.267 0.733 37 H 0.371 0.629 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.678 -6.672 -11.241 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.032 3.968 4 H 0.114 0.886 5 N -0.406 5.406 6 C 0.398 3.602 7 O -0.475 6.475 8 N -0.375 5.375 9 C 0.117 3.883 10 C -0.579 4.579 11 H 0.096 0.904 12 C -0.126 4.126 13 N -0.531 5.531 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.185 1.185 18 C 0.081 3.919 19 H 0.137 0.863 20 O -0.354 6.354 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.135 4.135 26 C -0.129 4.129 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.218 0.782 33 H 0.223 0.777 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.219 0.781 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.010 -6.903 -12.480 21.441 hybrid contribution -0.487 0.650 0.725 1.088 sum 15.523 -6.254 -11.755 20.451 Atomic orbital electron populations 1.21793 0.94549 1.00037 1.03743 1.21844 0.97121 0.95316 1.02146 1.21479 0.92922 0.93954 0.88404 0.88604 1.45129 1.16665 1.62495 1.16267 1.16011 0.81567 0.78533 0.84049 1.90873 1.51812 1.65484 1.39303 1.45390 1.19512 1.59493 1.13136 1.19329 0.78842 0.92563 0.97533 1.21089 1.02556 1.37293 0.96993 0.90366 1.24772 0.98238 0.94334 0.95229 1.69880 1.27232 1.36983 1.19008 0.86823 0.82415 0.77985 0.82505 1.19864 1.20967 1.18468 1.21232 0.90931 0.86915 0.92809 0.86322 1.86629 1.76481 1.54935 1.17350 1.20420 0.99857 0.96787 0.93994 1.20772 0.99652 0.95721 0.96385 1.21137 0.98808 0.94223 0.98847 1.21177 1.00132 0.99813 0.92677 1.21127 0.99390 0.95359 0.97648 1.20932 0.99423 0.94632 0.97885 0.91763 0.92351 0.94104 0.91654 0.91527 0.78164 0.77696 0.96026 0.96444 0.92300 0.78066 0.86655 0.85796 0.86089 0.86060 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.51 37.16 0.32 -1.79 16 2 C -0.13 -1.48 5.33 -26.73 -0.14 -1.62 16 3 C 0.14 1.66 2.15 -67.93 -0.15 1.51 16 4 H 0.10 1.35 7.58 -51.93 -0.39 0.95 16 5 N -0.75 -10.04 4.22 -58.67 -0.25 -10.29 16 6 C 0.70 13.11 7.13 -86.92 -0.62 12.49 16 7 O -0.60 -13.25 13.48 5.28 0.07 -13.18 16 8 N -0.72 -14.55 5.55 -66.41 -0.37 -14.92 16 9 C 0.24 5.92 4.50 -5.19 -0.02 5.90 16 10 C -0.54 -14.82 9.83 -34.44 -0.34 -15.16 16 11 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 12 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 13 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 14 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 18 C 0.14 1.37 3.12 -27.88 -0.09 1.28 16 19 H 0.12 1.01 8.05 -51.92 -0.42 0.59 16 20 O -0.55 -5.26 12.36 -35.23 -0.44 -5.70 16 21 C -0.11 -1.16 4.78 -104.62 -0.50 -1.66 16 22 C -0.11 -1.11 8.17 -39.58 -0.32 -1.43 16 23 C -0.11 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 26 C -0.11 -1.14 9.68 -39.58 -0.38 -1.53 16 27 H 0.06 1.13 5.65 -51.93 -0.29 0.84 16 28 H 0.06 0.92 7.84 -51.93 -0.41 0.51 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 32 H 0.38 4.16 5.62 -40.82 -0.23 3.93 16 33 H 0.39 6.92 8.34 -40.82 -0.34 6.58 16 34 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 35 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.37 2.75 6.26 45.56 0.29 3.04 16 38 H 0.12 0.95 5.62 -52.48 -0.30 0.65 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -33.14 338.72 -8.68 -41.82 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.38 Total: 10.70 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -3.54 Total: -4.68 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.16 Total: -50.96 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.36 Total: -18.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.14 -8.68 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875541038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.634 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds