Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47298 * 2 1 4 4 H 1.09002 * 109.46916 * 305.00751 * 3 2 1 5 5 N 1.46500 * 109.46837 * 65.00184 * 3 2 1 6 6 C 1.34773 * 120.00431 * 275.00470 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50701 * 109.46923 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00145 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00027 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00241 * 180.02562 * 12 10 9 14 14 Si 1.86809 * 119.99866 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.46710 * 90.00048 * 14 12 10 16 16 H 1.48500 * 109.46865 * 209.99357 * 14 12 10 17 17 H 1.48491 * 109.47392 * 329.99819 * 14 12 10 18 18 C 1.52995 * 109.47295 * 185.00367 * 3 2 1 19 19 H 1.09007 * 109.46938 * 65.00437 * 18 3 2 20 20 O 1.42897 * 109.47309 * 305.00101 * 18 3 2 21 21 C 1.50701 * 109.47091 * 184.99892 * 18 3 2 22 22 C 1.38233 * 119.99687 * 84.73133 * 21 18 3 23 23 C 1.38235 * 119.99919 * 179.81096 * 22 21 18 24 24 C 1.38233 * 120.00037 * 0.39397 * 23 22 21 25 25 C 1.38240 * 119.99887 * 359.85766 * 24 23 22 26 26 C 1.38232 * 119.99975 * 359.95594 * 25 24 23 27 27 H 1.09005 * 109.46888 * 299.99223 * 1 2 3 28 28 H 1.08998 * 109.47562 * 59.99306 * 1 2 3 29 29 H 1.08999 * 109.47396 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46888 * 240.00777 * 2 1 3 31 31 H 1.08993 * 109.47875 * 120.00371 * 2 1 3 32 32 H 0.97000 * 119.99456 * 95.00032 * 5 3 2 33 33 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 34 34 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 35 35 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 36 36 H 0.97003 * 119.99905 * 179.97438 * 13 12 10 37 37 H 0.96693 * 114.00253 * 300.00476 * 20 18 3 38 38 H 1.08006 * 120.00056 * 359.97438 * 22 21 18 39 39 H 1.08006 * 119.99885 * 180.22594 * 23 22 21 40 40 H 1.07995 * 120.00296 * 179.83249 * 24 23 22 41 41 H 1.08000 * 119.99820 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.00194 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6643 1.3672 7 8 -0.3413 2.6326 0.4320 8 7 0.0767 3.2620 2.5207 9 6 -1.2488 3.8729 2.6481 10 6 -1.3978 4.4673 4.0249 11 1 -0.5865 4.3967 4.7342 12 6 -2.5697 5.1012 4.3789 13 7 -2.6996 5.6204 5.5802 14 14 -3.9734 5.2227 3.1522 15 1 -4.8604 4.0404 3.2964 16 1 -4.7520 6.4602 3.4119 17 1 -3.4236 5.2639 1.7734 18 6 3.5648 1.4444 -0.1258 19 1 3.8498 1.0378 -1.0962 20 8 4.1294 0.6404 0.9119 21 6 4.0773 2.8562 -0.0026 22 6 4.3069 3.4016 1.2467 23 6 4.7807 4.6953 1.3596 24 6 5.0172 5.4464 0.2235 25 6 4.7827 4.9028 -1.0257 26 6 4.3125 3.6078 -1.1387 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8898 32 1 2.2721 2.1231 1.9978 33 1 0.6963 3.2876 3.2666 34 1 -1.3609 4.6570 1.8993 35 1 -2.0152 3.1130 2.4959 36 1 -3.5241 6.0667 5.8292 37 1 3.9164 0.9443 1.8048 38 1 4.1186 2.8160 2.1344 39 1 4.9635 5.1201 2.3356 40 1 5.3848 6.4580 0.3118 41 1 4.9671 5.4898 -1.9133 42 1 4.1289 3.1832 -2.1146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875541038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = -84.661880 kcal Electronic energy + Delta-G solvation = -23879.126160 eV Core-core repulsion = 20436.873074 eV Total energy + Delta-G solvation = -3442.253086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56441 -40.25480 -38.40243 -36.32560 -35.53119 -34.48144 -33.12159 -32.52653 -31.70846 -29.87399 -28.65222 -25.13157 -24.22035 -23.51762 -22.32495 -22.02073 -21.43528 -20.08067 -18.71798 -18.27181 -17.76554 -16.83234 -16.76188 -16.56037 -16.15801 -16.07627 -15.52879 -15.05093 -14.92558 -14.82327 -14.61164 -14.34823 -14.22420 -13.89567 -13.84229 -13.39965 -13.03241 -12.90352 -12.70998 -12.64283 -12.43132 -12.07575 -11.92887 -11.91457 -11.71392 -11.63440 -11.15165 -11.05487 -10.90526 -10.14773 -9.82114 -9.67061 -9.58317 -8.39123 -6.45270 0.40390 0.50327 1.32863 1.34999 1.48081 1.86612 2.28761 2.31210 2.82330 2.96930 3.37732 3.45293 3.57860 3.82307 3.93483 4.12093 4.20041 4.24845 4.28855 4.44304 4.57010 4.61932 4.68564 4.76730 4.86192 4.97253 5.06937 5.07744 5.09163 5.13470 5.24513 5.27994 5.49965 5.54558 5.55528 5.62720 5.63144 5.66596 5.98115 6.10043 6.28706 6.56861 6.60223 7.16089 7.29245 7.74905 8.75634 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.004605 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.686332 B = 6078.727344 C = 7121.268142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.139 3.861 4 H 0.077 0.923 5 N -0.725 5.725 6 C 0.699 3.301 7 O -0.630 6.630 8 N -0.724 5.724 9 C 0.255 3.745 10 C -0.543 4.543 11 H 0.059 0.941 12 C 0.028 3.972 13 N -0.931 5.931 14 Si 0.935 3.065 15 H -0.265 1.265 16 H -0.273 1.273 17 H -0.262 1.262 18 C 0.156 3.844 19 H 0.138 0.862 20 O -0.551 6.551 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.133 4.133 25 C -0.129 4.129 26 C -0.123 4.123 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.400 0.600 33 H 0.402 0.598 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.272 0.728 37 H 0.380 0.620 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.708 -7.619 -12.342 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.034 3.966 4 H 0.095 0.905 5 N -0.383 5.383 6 C 0.399 3.601 7 O -0.512 6.512 8 N -0.378 5.378 9 C 0.131 3.869 10 C -0.581 4.581 11 H 0.077 0.923 12 C -0.172 4.172 13 N -0.570 5.570 14 Si 0.759 3.241 15 H -0.190 1.190 16 H -0.199 1.199 17 H -0.186 1.186 18 C 0.097 3.903 19 H 0.155 0.845 20 O -0.358 6.358 21 C -0.124 4.124 22 C -0.138 4.138 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.147 4.147 26 C -0.141 4.141 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.236 0.764 33 H 0.237 0.763 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 17.105 -7.876 -13.564 23.208 hybrid contribution -0.713 0.930 1.083 1.596 sum 16.392 -6.945 -12.481 21.742 Atomic orbital electron populations 1.21719 0.96764 1.00106 1.01163 1.21813 0.94899 0.95242 1.03793 1.21616 0.94696 0.93654 0.86652 0.90506 1.44915 1.14914 1.60979 1.17531 1.16079 0.82674 0.78352 0.82951 1.90852 1.53342 1.66688 1.40302 1.45099 1.18391 1.59944 1.14355 1.18873 0.80899 0.91808 0.95342 1.21275 1.02032 1.37021 0.97766 0.92272 1.25543 1.00751 0.94111 0.96790 1.69977 1.28267 1.38076 1.20702 0.85890 0.79597 0.78556 0.80028 1.19021 1.19852 1.18638 1.21120 0.88661 0.86774 0.93780 0.84475 1.86628 1.76317 1.54901 1.17960 1.20593 1.00297 0.97245 0.94231 1.21059 0.99583 0.95984 0.97141 1.21414 0.99147 0.94644 0.99554 1.21480 1.00100 1.00632 0.92876 1.21435 0.99229 0.95693 0.98340 1.21260 0.99194 0.94875 0.98767 0.95092 0.94098 0.92702 0.89147 0.90620 0.76352 0.76348 0.97557 0.97501 0.91891 0.77005 0.84972 0.84818 0.84745 0.84354 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.51 71.98 0.61 -3.36 16 2 C -0.12 -2.51 5.33 30.60 0.16 -2.35 16 3 C 0.14 3.08 2.15 44.99 0.10 3.17 16 4 H 0.08 2.07 7.58 -2.39 -0.02 2.05 16 5 N -0.73 -18.49 4.22 -457.80 -1.93 -20.42 16 6 C 0.70 25.97 7.13 179.06 1.28 27.25 16 7 O -0.63 -28.16 13.48 -4.01 -0.05 -28.22 16 8 N -0.72 -29.04 5.55 -482.29 -2.68 -31.71 16 9 C 0.26 12.65 4.50 85.63 0.38 13.04 16 10 C -0.54 -30.02 9.83 25.60 0.25 -29.76 16 11 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 12 C 0.03 1.61 5.47 84.65 0.46 2.07 16 13 N -0.93 -55.64 13.96 21.44 0.30 -55.34 16 14 Si 0.94 44.47 27.47 68.60 1.88 46.35 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.26 -12.45 6.54 99.48 0.65 -11.80 16 18 C 0.16 2.62 3.12 29.85 0.09 2.71 16 19 H 0.14 1.85 8.05 -2.38 -0.02 1.84 16 20 O -0.55 -8.84 12.36 -148.98 -1.84 -10.68 16 21 C -0.12 -2.36 4.78 -19.87 -0.09 -2.45 16 22 C -0.12 -2.27 8.17 22.27 0.18 -2.09 16 23 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 24 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 25 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 26 C -0.12 -2.33 9.68 22.27 0.22 -2.11 16 27 H 0.03 1.07 5.65 -2.38 -0.01 1.06 16 28 H 0.04 1.27 7.84 -2.39 -0.02 1.26 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.08 1.50 7.73 -2.39 -0.02 1.48 16 32 H 0.40 7.87 5.62 -92.71 -0.52 7.35 16 33 H 0.40 14.07 8.34 -92.71 -0.77 13.30 16 34 H 0.01 0.34 7.20 -2.39 -0.02 0.33 16 35 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.38 4.47 6.26 -74.06 -0.46 4.01 16 38 H 0.13 1.88 5.62 -2.91 -0.02 1.87 16 39 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -71.32 338.72 -0.76 -72.09 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.76 Total: 28.74 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 4.32 Total: -0.80 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -4.31 Total: -107.48 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -1.90 Total: -38.90 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -71.32 -0.76 -72.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875541038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.574 kcal (2) G-P(sol) polarization free energy of solvation -71.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds