Wall clock time and date at job start Tue Mar 31 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 N 1.46498 * 109.46687 * 65.00113 * 3 2 1 6 6 C 1.34777 * 120.00199 * 274.99716 * 5 3 2 7 7 O 1.21583 * 119.99959 * 0.02562 * 6 5 3 8 8 N 1.34780 * 120.00208 * 179.97438 * 6 5 3 9 9 C 1.46494 * 120.00185 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47352 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99889 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00492 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99400 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00325 * 179.97438 * 12 10 9 15 15 H 1.48511 * 109.47031 * 59.99884 * 14 12 10 16 16 H 1.48506 * 109.47323 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47682 * 300.00023 * 14 12 10 18 18 C 1.52999 * 109.47054 * 185.00114 * 3 2 1 19 19 H 1.09000 * 109.46829 * 185.00206 * 18 3 2 20 20 O 1.42896 * 109.46982 * 304.99842 * 18 3 2 21 21 C 1.50694 * 109.47232 * 65.00372 * 18 3 2 22 22 C 1.38238 * 119.99851 * 279.72941 * 21 18 3 23 23 C 1.38237 * 119.99966 * 179.79085 * 22 21 18 24 24 C 1.38237 * 119.99919 * 0.43404 * 23 22 21 25 25 C 1.38239 * 119.99890 * 359.81583 * 24 23 22 26 26 C 1.38229 * 120.00022 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 30 30 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 31 31 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 32 32 H 0.96999 * 119.99886 * 95.00381 * 5 3 2 33 33 H 0.96999 * 119.99877 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.46851 * 300.00511 * 9 8 6 35 35 H 1.09001 * 109.46890 * 60.00286 * 9 8 6 36 36 H 0.97004 * 119.99736 * 180.02562 * 13 12 10 37 37 H 0.96701 * 114.00163 * 60.01005 * 20 18 3 38 38 H 1.08005 * 120.00182 * 359.97438 * 22 21 18 39 39 H 1.08002 * 120.00280 * 180.27301 * 23 22 21 40 40 H 1.08001 * 119.99760 * 179.84038 * 24 23 22 41 41 H 1.08001 * 119.99529 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.99826 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6524 2.0974 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3415 2.6319 0.4322 8 7 0.0783 3.2664 2.5189 9 6 -1.2450 3.8821 2.6443 10 6 -1.3918 4.4818 4.0190 11 1 -0.5806 4.4110 4.7285 12 6 -2.5621 5.1201 4.3714 13 7 -3.5501 5.2058 3.5076 14 14 -2.7443 5.8628 6.0756 15 1 -1.6968 6.8955 6.2801 16 1 -4.0858 6.4871 6.2027 17 1 -2.5949 4.7970 7.0988 18 6 3.5648 1.4444 -0.1258 19 1 3.9355 2.4655 -0.0366 20 8 4.1293 0.6405 0.9121 21 6 3.9589 0.8823 -1.4673 22 6 3.9842 -0.4859 -1.6629 23 6 4.3415 -1.0015 -2.8948 24 6 4.6822 -0.1490 -3.9283 25 6 4.6619 1.2191 -3.7311 26 6 4.3004 1.7347 -2.5006 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.2719 2.1231 1.9978 33 1 0.6978 3.2920 3.2649 34 1 -1.3543 4.6645 1.8933 35 1 -2.0140 3.1243 2.4941 36 1 -4.3733 5.6551 3.7554 37 1 3.8427 -0.2829 0.8942 38 1 3.7219 -1.1521 -0.8543 39 1 4.3570 -2.0703 -3.0490 40 1 4.9639 -0.5519 -4.8900 41 1 4.9277 1.8850 -4.5387 42 1 4.2850 2.8035 -2.3464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875541039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:37 Heat of formation + Delta-G solvation = -63.854894 kcal Electronic energy + Delta-G solvation = -23296.299046 eV Core-core repulsion = 19854.948219 eV Total energy + Delta-G solvation = -3441.350828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 6.20 seconds Orbital eigenvalues (eV) -40.44857 -39.15124 -37.44401 -34.81926 -33.88359 -32.55845 -31.83261 -31.61913 -30.99019 -28.10166 -26.71640 -24.34232 -23.02262 -22.49670 -21.70824 -20.46672 -20.03154 -18.13498 -17.92617 -16.55487 -15.98124 -15.94420 -15.69603 -15.35920 -15.07139 -14.65970 -14.22583 -14.02931 -13.88207 -13.66020 -13.14177 -12.95130 -12.91233 -12.53764 -12.23070 -11.92222 -11.85219 -11.63347 -11.44085 -11.24352 -11.00518 -10.91768 -10.86104 -10.63224 -10.29495 -10.23395 -9.35518 -9.31894 -9.15254 -9.06354 -8.68676 -8.56037 -7.71482 -6.12893 -4.19210 1.03568 1.13329 3.26781 3.27603 3.32590 3.35341 3.56245 3.97849 4.22200 4.34235 4.45201 4.55853 4.61800 4.75328 4.83261 4.93443 5.16625 5.19373 5.22539 5.23170 5.28773 5.51052 5.58084 5.67806 5.75792 5.86762 6.00199 6.14885 6.17699 6.24369 6.31099 6.37670 6.70480 6.77282 6.93129 7.17202 7.32047 7.56329 7.59317 7.60449 7.95476 8.08887 8.79957 8.99800 9.38021 9.52407 10.97320 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034097 B = 0.002911 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.986314 B = 9615.371245 C = 9693.198741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.144 4.144 3 C 0.142 3.858 4 H 0.095 0.905 5 N -0.748 5.748 6 C 0.693 3.307 7 O -0.596 6.596 8 N -0.730 5.730 9 C 0.269 3.731 10 C -0.542 4.542 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.904 3.096 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.140 3.860 19 H 0.114 0.886 20 O -0.551 6.551 21 C -0.109 4.109 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.106 4.106 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.395 0.605 33 H 0.386 0.614 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.373 0.627 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.035 -12.125 -11.154 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C 0.035 3.965 4 H 0.113 0.887 5 N -0.406 5.406 6 C 0.393 3.607 7 O -0.475 6.475 8 N -0.382 5.382 9 C 0.148 3.852 10 C -0.580 4.580 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.524 5.524 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C 0.080 3.920 19 H 0.132 0.868 20 O -0.358 6.358 21 C -0.110 4.110 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.124 4.124 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.228 0.772 33 H 0.218 0.782 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.222 0.778 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 17.331 -11.478 -11.868 23.937 hybrid contribution 0.068 -0.058 1.352 1.355 sum 17.399 -11.537 -10.516 23.376 Atomic orbital electron populations 1.21734 0.93948 1.00009 1.04061 1.22143 0.98416 0.96300 1.01429 1.21299 0.92749 0.93893 0.88581 0.88703 1.45104 1.16815 1.62291 1.16347 1.16116 0.81581 0.78747 0.84255 1.90876 1.51808 1.65541 1.39277 1.45730 1.20324 1.59224 1.12970 1.18940 0.77042 0.92595 0.96657 1.21204 1.01001 1.37401 0.98423 0.92036 1.24940 0.95461 0.95874 0.97745 1.69971 1.05124 1.42395 1.34860 0.86480 0.77350 0.79355 0.83730 1.20104 1.21101 1.20102 1.21158 0.91914 0.95454 0.83464 0.86845 1.86610 1.72265 1.24991 1.51909 1.20393 1.00188 0.94180 0.96251 1.20934 0.99669 0.94516 0.97596 1.21120 0.99558 0.99835 0.93213 1.21186 0.99938 0.93664 0.99029 1.21159 0.99848 0.95458 0.97160 1.21046 0.98661 0.99818 0.92892 0.92202 0.94176 0.91523 0.90999 0.92145 0.77157 0.78218 0.95842 0.95832 0.92446 0.77758 0.85956 0.85949 0.86100 0.85897 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.51 37.16 0.32 -1.84 16 2 C -0.14 -1.70 4.43 -26.73 -0.12 -1.82 16 3 C 0.14 1.81 2.12 -67.93 -0.14 1.67 16 4 H 0.09 1.45 7.58 -51.93 -0.39 1.05 16 5 N -0.75 -11.12 5.02 -58.68 -0.29 -11.41 16 6 C 0.69 14.01 7.13 -86.91 -0.62 13.39 16 7 O -0.60 -14.22 13.48 5.29 0.07 -14.15 16 8 N -0.73 -15.67 5.55 -66.42 -0.37 -16.04 16 9 C 0.27 7.23 5.43 -5.20 -0.03 7.20 16 10 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 11 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 14 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 C 0.14 1.44 3.18 -27.89 -0.09 1.35 16 19 H 0.11 1.18 8.00 -51.93 -0.42 0.77 16 20 O -0.55 -5.48 12.82 -35.23 -0.45 -5.93 16 21 C -0.11 -1.06 4.82 -104.63 -0.50 -1.57 16 22 C -0.11 -0.94 7.28 -39.58 -0.29 -1.23 16 23 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 25 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 26 C -0.11 -1.00 9.67 -39.59 -0.38 -1.38 16 27 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.25 5.64 -51.93 -0.29 0.95 16 30 H 0.07 0.73 5.19 -51.93 -0.27 0.46 16 31 H 0.06 0.63 7.00 -51.93 -0.36 0.26 16 32 H 0.39 5.08 8.40 -40.82 -0.34 4.73 16 33 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 34 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.37 2.79 5.77 45.56 0.26 3.06 16 38 H 0.12 0.84 5.82 -52.48 -0.31 0.53 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 1.04 8.04 -52.49 -0.42 0.62 16 LS Contribution 340.57 15.07 5.13 5.13 Total: -1.00 -32.98 340.57 -9.02 -42.00 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.36 Total: 11.82 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.47 Total: -1.84 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.07 Total: -53.06 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.38 Total: -20.08 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.98 -9.02 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875541039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.857 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.20 seconds