Wall clock time and date at job start Tue Mar 31 2020 06:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 N 1.46498 * 109.46687 * 65.00113 * 3 2 1 6 6 C 1.34777 * 120.00199 * 274.99716 * 5 3 2 7 7 O 1.21583 * 119.99959 * 0.02562 * 6 5 3 8 8 N 1.34780 * 120.00208 * 179.97438 * 6 5 3 9 9 C 1.46494 * 120.00185 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47352 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99889 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00492 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99400 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00325 * 179.97438 * 12 10 9 15 15 H 1.48511 * 109.47031 * 59.99884 * 14 12 10 16 16 H 1.48506 * 109.47323 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47682 * 300.00023 * 14 12 10 18 18 C 1.52999 * 109.47054 * 185.00114 * 3 2 1 19 19 H 1.09000 * 109.46829 * 185.00206 * 18 3 2 20 20 O 1.42896 * 109.46982 * 304.99842 * 18 3 2 21 21 C 1.50694 * 109.47232 * 65.00372 * 18 3 2 22 22 C 1.38238 * 119.99851 * 279.72941 * 21 18 3 23 23 C 1.38237 * 119.99966 * 179.79085 * 22 21 18 24 24 C 1.38237 * 119.99919 * 0.43404 * 23 22 21 25 25 C 1.38239 * 119.99890 * 359.81583 * 24 23 22 26 26 C 1.38229 * 120.00022 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 30 30 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 31 31 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 32 32 H 0.96999 * 119.99886 * 95.00381 * 5 3 2 33 33 H 0.96999 * 119.99877 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.46851 * 300.00511 * 9 8 6 35 35 H 1.09001 * 109.46890 * 60.00286 * 9 8 6 36 36 H 0.97004 * 119.99736 * 180.02562 * 13 12 10 37 37 H 0.96701 * 114.00163 * 60.01005 * 20 18 3 38 38 H 1.08005 * 120.00182 * 359.97438 * 22 21 18 39 39 H 1.08002 * 120.00280 * 180.27301 * 23 22 21 40 40 H 1.08001 * 119.99760 * 179.84038 * 24 23 22 41 41 H 1.08001 * 119.99529 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.99826 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6524 2.0974 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3415 2.6319 0.4322 8 7 0.0783 3.2664 2.5189 9 6 -1.2450 3.8821 2.6443 10 6 -1.3918 4.4818 4.0190 11 1 -0.5806 4.4110 4.7285 12 6 -2.5621 5.1201 4.3714 13 7 -3.5501 5.2058 3.5076 14 14 -2.7443 5.8628 6.0756 15 1 -1.6968 6.8955 6.2801 16 1 -4.0858 6.4871 6.2027 17 1 -2.5949 4.7970 7.0988 18 6 3.5648 1.4444 -0.1258 19 1 3.9355 2.4655 -0.0366 20 8 4.1293 0.6405 0.9121 21 6 3.9589 0.8823 -1.4673 22 6 3.9842 -0.4859 -1.6629 23 6 4.3415 -1.0015 -2.8948 24 6 4.6822 -0.1490 -3.9283 25 6 4.6619 1.2191 -3.7311 26 6 4.3004 1.7347 -2.5006 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.2719 2.1231 1.9978 33 1 0.6978 3.2920 3.2649 34 1 -1.3543 4.6645 1.8933 35 1 -2.0140 3.1243 2.4941 36 1 -4.3733 5.6551 3.7554 37 1 3.8427 -0.2829 0.8942 38 1 3.7219 -1.1521 -0.8543 39 1 4.3570 -2.0703 -3.0490 40 1 4.9639 -0.5519 -4.8900 41 1 4.9277 1.8850 -4.5387 42 1 4.2850 2.8035 -2.3464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875541039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:29 Heat of formation + Delta-G solvation = -88.762535 kcal Electronic energy + Delta-G solvation = -23297.379123 eV Core-core repulsion = 19854.948219 eV Total energy + Delta-G solvation = -3442.430904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.11 seconds Orbital eigenvalues (eV) -41.49622 -40.39104 -38.38561 -36.29726 -35.53912 -34.44110 -33.10589 -32.47077 -31.69307 -29.55172 -28.31924 -25.37999 -24.65601 -23.49006 -22.62115 -21.73431 -21.39683 -19.79973 -18.72037 -18.07851 -17.46310 -16.98279 -16.79407 -16.54298 -16.34746 -16.06805 -15.50297 -15.13026 -14.96479 -14.69309 -14.51953 -14.18378 -13.99418 -13.86862 -13.72797 -13.40799 -13.08772 -12.91679 -12.67143 -12.58609 -12.47686 -12.21419 -11.99996 -11.86310 -11.73480 -11.48675 -11.20565 -11.01262 -10.77196 -10.15593 -9.79059 -9.69408 -9.49474 -8.27579 -6.43830 0.37651 0.50584 1.43249 1.47704 1.55645 1.90876 2.32555 2.40059 2.84392 3.07223 3.43288 3.50672 3.62319 3.78886 3.87991 4.07710 4.14953 4.16202 4.30216 4.42903 4.53331 4.62785 4.68489 4.79516 4.96228 5.00526 5.05963 5.08097 5.16014 5.18622 5.29603 5.44810 5.52441 5.55126 5.63145 5.63533 5.64000 5.72590 5.87829 6.10244 6.31107 6.65850 6.68220 7.25795 7.36736 7.80442 8.84536 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034097 B = 0.002911 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.986314 B = 9615.371245 C = 9693.198741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.140 3.860 4 H 0.067 0.933 5 N -0.725 5.725 6 C 0.693 3.307 7 O -0.636 6.636 8 N -0.727 5.727 9 C 0.290 3.710 10 C -0.556 4.556 11 H 0.082 0.918 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.985 3.015 15 H -0.263 1.263 16 H -0.285 1.285 17 H -0.262 1.262 18 C 0.157 3.843 19 H 0.111 0.889 20 O -0.554 6.554 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.124 4.124 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.409 0.591 33 H 0.402 0.598 34 H -0.016 1.016 35 H -0.016 1.016 36 H 0.269 0.731 37 H 0.386 0.614 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.314 -13.430 -10.148 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.173 4.173 3 C 0.034 3.966 4 H 0.085 0.915 5 N -0.382 5.382 6 C 0.393 3.607 7 O -0.518 6.518 8 N -0.381 5.381 9 C 0.166 3.834 10 C -0.594 4.594 11 H 0.100 0.900 12 C -0.196 4.196 13 N -0.569 5.569 14 Si 0.808 3.192 15 H -0.187 1.187 16 H -0.210 1.210 17 H -0.187 1.187 18 C 0.097 3.903 19 H 0.129 0.871 20 O -0.363 6.363 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.147 4.147 26 C -0.143 4.143 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.245 0.755 33 H 0.237 0.763 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.077 0.923 37 H 0.237 0.763 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 19.698 -12.825 -10.854 25.890 hybrid contribution -0.603 0.274 0.908 1.124 sum 19.095 -12.551 -9.945 24.921 Atomic orbital electron populations 1.21658 0.96700 1.00233 1.00883 1.22104 0.95641 0.95825 1.03761 1.21468 0.94822 0.93993 0.86301 0.91471 1.44887 1.14838 1.60803 1.17689 1.16239 0.82716 0.78575 0.83202 1.90854 1.53533 1.66852 1.40540 1.45327 1.18952 1.59519 1.14259 1.18335 0.78666 0.90451 0.95934 1.21583 1.01852 1.37320 0.98606 0.89998 1.26056 0.94885 0.96119 1.02501 1.70139 1.05887 1.43381 1.37531 0.85209 0.77456 0.78739 0.77808 1.18709 1.21041 1.18674 1.20865 0.89344 0.95762 0.84296 0.87139 1.86603 1.72080 1.25941 1.51632 1.20372 1.01462 0.94952 0.95769 1.21200 0.99435 0.94203 0.98580 1.21466 0.98806 1.01132 0.92883 1.21536 0.99154 0.93500 1.00090 1.21422 0.99723 0.96293 0.97230 1.21242 0.99290 1.00179 0.93545 0.94746 0.92183 0.95333 0.88578 0.89711 0.75452 0.76297 0.99849 0.99799 0.92261 0.76317 0.84049 0.83704 0.84029 0.84447 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 8.51 71.98 0.61 -3.65 16 2 C -0.14 -2.98 4.43 30.60 0.14 -2.84 16 3 C 0.14 3.52 2.12 44.99 0.10 3.61 16 4 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 5 N -0.73 -21.34 5.02 -457.81 -2.30 -23.63 16 6 C 0.69 28.92 7.13 179.05 1.28 30.20 16 7 O -0.64 -32.13 13.48 -3.98 -0.05 -32.18 16 8 N -0.73 -32.01 5.55 -482.31 -2.68 -34.68 16 9 C 0.29 16.32 5.43 85.63 0.46 16.79 16 10 C -0.56 -30.82 9.28 25.60 0.24 -30.58 16 11 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 12 C 0.00 0.22 5.46 84.66 0.46 0.68 16 13 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 14 Si 0.98 42.86 29.54 68.60 2.03 44.89 16 15 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 18 C 0.16 3.01 3.18 29.85 0.09 3.11 16 19 H 0.11 2.19 8.00 -2.39 -0.02 2.17 16 20 O -0.55 -9.51 12.82 -148.98 -1.91 -11.42 16 21 C -0.12 -2.23 4.82 -19.87 -0.10 -2.33 16 22 C -0.12 -1.70 7.28 22.27 0.16 -1.54 16 23 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 24 C -0.12 -1.70 10.05 22.27 0.22 -1.48 16 25 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 26 C -0.12 -2.25 9.67 22.27 0.22 -2.04 16 27 H 0.03 1.21 7.84 -2.38 -0.02 1.19 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.03 1.09 5.64 -2.39 -0.01 1.07 16 30 H 0.10 1.71 5.19 -2.39 -0.01 1.70 16 31 H 0.08 1.49 7.00 -2.39 -0.02 1.48 16 32 H 0.41 9.90 8.40 -92.71 -0.78 9.12 16 33 H 0.40 14.85 8.34 -92.71 -0.77 14.08 16 34 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.39 4.39 5.77 -74.06 -0.43 3.97 16 38 H 0.14 1.41 5.82 -2.91 -0.02 1.40 16 39 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 42 H 0.13 2.11 8.04 -2.91 -0.02 2.08 16 Total: -1.00 -75.03 340.57 -1.21 -76.25 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -0.92 Total: 30.70 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 4.33 Total: 6.73 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -4.69 Total: -114.96 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -1.96 Total: -43.61 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -75.03 -1.21 -76.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875541039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.517 kcal (2) G-P(sol) polarization free energy of solvation -75.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.11 seconds