Wall clock time and date at job start Tue Mar 31 2020 06:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46867 * 2 1 4 4 H 1.08996 * 109.47468 * 55.00044 * 3 2 1 5 5 N 1.46503 * 109.46802 * 294.99549 * 3 2 1 6 6 C 1.34772 * 119.99737 * 85.00894 * 5 3 2 7 7 O 1.21586 * 120.00552 * 359.97438 * 6 5 3 8 8 N 1.34780 * 119.99948 * 179.97438 * 6 5 3 9 9 C 1.46504 * 120.00250 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47019 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00361 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99740 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00073 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99847 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47244 * 60.00076 * 14 12 10 16 16 H 1.48501 * 109.46978 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46957 * 299.99676 * 14 12 10 18 18 C 1.53002 * 109.46954 * 175.00093 * 3 2 1 19 19 H 1.09002 * 109.47070 * 174.99771 * 18 3 2 20 20 O 1.42898 * 109.47113 * 54.99641 * 18 3 2 21 21 C 1.50703 * 109.46966 * 294.99681 * 18 3 2 22 22 C 1.38236 * 119.99787 * 84.72732 * 21 18 3 23 23 C 1.38241 * 119.99636 * 179.81278 * 22 21 18 24 24 C 1.38234 * 120.00115 * 0.39672 * 23 22 21 25 25 C 1.38240 * 119.99714 * 359.85290 * 24 23 22 26 26 C 1.38228 * 120.00011 * 265.00375 * 21 18 3 27 27 H 1.08997 * 109.47278 * 300.00309 * 1 2 3 28 28 H 1.09005 * 109.46697 * 60.00115 * 1 2 3 29 29 H 1.09000 * 109.46988 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47278 * 239.99691 * 2 1 3 31 31 H 1.09001 * 109.46965 * 119.99455 * 2 1 3 32 32 H 0.96999 * 119.99735 * 264.99721 * 5 3 2 33 33 H 0.97004 * 119.99621 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.46575 * 299.99954 * 9 8 6 35 35 H 1.08995 * 109.46652 * 59.99667 * 9 8 6 36 36 H 0.96998 * 119.99896 * 179.97438 * 13 12 10 37 37 H 0.96698 * 113.99898 * 299.99778 * 20 18 3 38 38 H 1.07996 * 120.00216 * 359.97438 * 22 21 18 39 39 H 1.08000 * 119.99857 * 180.22806 * 23 22 21 40 40 H 1.07998 * 120.00030 * 179.84064 * 24 23 22 41 41 H 1.08003 * 119.99655 * 179.97438 * 25 24 23 42 42 H 1.08004 * 120.00508 * 359.97379 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0974 -1.2519 6 6 0.4352 2.6644 -1.3670 7 8 -0.3416 2.6320 -0.4322 8 7 0.0788 3.2673 -2.5186 9 6 -1.2446 3.8831 -2.6440 10 6 -1.3913 4.4828 -4.0187 11 1 -0.5799 4.4127 -4.7279 12 6 -2.5613 5.1220 -4.3707 13 7 -3.5493 5.2078 -3.5069 14 14 -2.7429 5.8660 -6.0745 15 1 -2.5941 4.8007 -7.0982 16 1 -4.0844 6.4901 -6.2016 17 1 -1.6949 6.8981 -6.2781 18 6 3.5648 1.4444 0.1257 19 1 3.9355 2.4656 0.0365 20 8 4.1293 0.6404 -0.9121 21 6 3.9589 0.8823 1.4673 22 6 4.0736 -0.4848 1.6371 23 6 4.4389 -1.0003 2.8667 24 6 4.6814 -0.1491 3.9286 25 6 4.5617 1.2178 3.7600 26 6 4.2001 1.7334 2.5294 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.2720 2.1231 -1.9978 33 1 0.6983 3.2928 -3.2646 34 1 -2.0136 3.1252 -2.4946 35 1 -1.3542 4.6649 -1.8925 36 1 -4.3721 5.6578 -3.7544 37 1 3.8426 -0.2829 -0.8942 38 1 3.8804 -1.1500 0.8086 39 1 4.5321 -2.0681 2.9985 40 1 4.9643 -0.5519 4.8899 41 1 4.7508 1.8828 4.5897 42 1 4.1065 2.8013 2.3979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875541040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:47 Heat of formation + Delta-G solvation = -64.676908 kcal Electronic energy + Delta-G solvation = -23294.650150 eV Core-core repulsion = 19853.263678 eV Total energy + Delta-G solvation = -3441.386473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43853 -39.15257 -37.44588 -34.82441 -33.88415 -32.55236 -31.83122 -31.59233 -31.00536 -28.10225 -26.72032 -24.30890 -23.00722 -22.52072 -21.72571 -20.44599 -20.03252 -18.13407 -17.94641 -16.55638 -15.97740 -15.93059 -15.68611 -15.34747 -15.08007 -14.66067 -14.26130 -14.00873 -13.87141 -13.65052 -13.15684 -12.95916 -12.91497 -12.53471 -12.20985 -11.92267 -11.85969 -11.63475 -11.41395 -11.26794 -11.00947 -10.92003 -10.86225 -10.63461 -10.30547 -10.24337 -9.35591 -9.31938 -9.15658 -9.05686 -8.68692 -8.56025 -7.71556 -6.12906 -4.19257 1.03993 1.13582 3.26855 3.27613 3.32590 3.35387 3.56241 3.97764 4.20526 4.34199 4.45261 4.56719 4.61837 4.75574 4.83885 4.93620 5.16800 5.19330 5.22892 5.23160 5.28789 5.51183 5.58141 5.68119 5.76050 5.86633 6.00066 6.15049 6.17957 6.24694 6.31095 6.37718 6.70692 6.77262 6.92952 7.17144 7.31743 7.56264 7.59265 7.60418 7.95418 8.08820 8.79926 8.99715 9.37958 9.52342 10.97289 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034149 B = 0.002911 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.749356 B = 9615.957586 C = 9691.075419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.142 4.142 3 C 0.142 3.858 4 H 0.095 0.905 5 N -0.748 5.748 6 C 0.693 3.307 7 O -0.596 6.596 8 N -0.731 5.731 9 C 0.269 3.731 10 C -0.542 4.542 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.904 3.096 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.140 3.860 19 H 0.114 0.886 20 O -0.551 6.551 21 C -0.109 4.109 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.107 4.107 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.395 0.605 33 H 0.386 0.614 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.373 0.627 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.013 -12.109 11.147 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.181 4.181 3 C 0.035 3.965 4 H 0.113 0.887 5 N -0.406 5.406 6 C 0.393 3.607 7 O -0.475 6.475 8 N -0.383 5.383 9 C 0.148 3.852 10 C -0.580 4.580 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.524 5.524 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C 0.080 3.920 19 H 0.132 0.868 20 O -0.358 6.358 21 C -0.110 4.110 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.136 4.136 26 C -0.125 4.125 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.228 0.772 33 H 0.218 0.782 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.223 0.777 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 17.309 -11.463 11.861 23.910 hybrid contribution 0.073 -0.063 -1.352 1.356 sum 17.382 -11.525 10.508 23.354 Atomic orbital electron populations 1.21735 0.93949 1.00014 1.04058 1.22088 0.98388 0.96235 1.01367 1.21307 0.92717 0.93905 0.88584 0.88697 1.45106 1.16815 1.62293 1.16351 1.16116 0.81580 0.78745 0.84259 1.90877 1.51801 1.65556 1.39274 1.45734 1.20339 1.59178 1.12999 1.18942 0.77038 0.92600 0.96651 1.21204 1.01007 1.37381 0.98437 0.92033 1.24941 0.95463 0.95870 0.97739 1.69970 1.05143 1.42380 1.34862 0.86480 0.77349 0.79360 0.83732 1.20107 1.21102 1.20099 1.21162 0.91906 0.95460 0.83474 0.86801 1.86610 1.72241 1.25005 1.51943 1.20396 1.00272 0.94192 0.96098 1.20893 0.99686 0.94451 0.97640 1.21115 0.99708 0.99821 0.93053 1.21183 1.00121 0.93673 0.98890 1.21160 0.99674 0.95466 0.97272 1.21038 0.98916 0.99872 0.92671 0.92202 0.91517 0.94175 0.92158 0.91167 0.77153 0.78218 0.95836 0.95834 0.92444 0.77746 0.86074 0.85966 0.86106 0.85893 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.51 37.16 0.32 -1.84 16 2 C -0.14 -1.68 4.55 -26.73 -0.12 -1.80 16 3 C 0.14 1.81 2.12 -67.93 -0.14 1.67 16 4 H 0.10 1.44 7.58 -51.93 -0.39 1.05 16 5 N -0.75 -11.10 5.02 -58.67 -0.29 -11.40 16 6 C 0.69 14.00 7.13 -86.92 -0.62 13.38 16 7 O -0.60 -14.21 13.48 5.29 0.07 -14.14 16 8 N -0.73 -15.66 5.55 -66.42 -0.37 -16.03 16 9 C 0.27 7.22 5.43 -5.19 -0.03 7.19 16 10 C -0.54 -14.87 9.28 -34.44 -0.32 -15.18 16 11 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 14 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 C 0.14 1.44 3.16 -27.88 -0.09 1.35 16 19 H 0.11 1.19 8.05 -51.93 -0.42 0.77 16 20 O -0.55 -5.46 12.77 -35.23 -0.45 -5.91 16 21 C -0.11 -1.06 4.74 -104.62 -0.50 -1.55 16 22 C -0.11 -0.93 7.34 -39.58 -0.29 -1.23 16 23 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 26 C -0.11 -1.01 9.68 -39.59 -0.38 -1.40 16 27 H 0.06 1.01 7.84 -51.93 -0.41 0.61 16 28 H 0.07 1.25 5.64 -51.93 -0.29 0.96 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.63 7.00 -51.93 -0.36 0.27 16 31 H 0.07 0.72 5.52 -51.93 -0.29 0.43 16 32 H 0.39 5.07 8.40 -40.82 -0.34 4.73 16 33 H 0.39 7.19 8.34 -40.82 -0.34 6.85 16 34 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.37 2.78 5.66 45.56 0.26 3.04 16 38 H 0.12 0.82 6.09 -52.49 -0.32 0.50 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -32.94 341.18 -9.05 -41.99 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.40 Total: 11.77 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -3.46 Total: -1.84 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.07 Total: -53.03 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.38 Total: -20.05 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.94 -9.05 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875541040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.691 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds