Wall clock time and date at job start Tue Mar 31 2020 06:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46867 * 2 1 4 4 H 1.08996 * 109.47468 * 55.00044 * 3 2 1 5 5 N 1.46503 * 109.46802 * 294.99549 * 3 2 1 6 6 C 1.34772 * 119.99737 * 85.00894 * 5 3 2 7 7 O 1.21586 * 120.00552 * 359.97438 * 6 5 3 8 8 N 1.34780 * 119.99948 * 179.97438 * 6 5 3 9 9 C 1.46504 * 120.00250 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47019 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00361 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99740 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00073 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99847 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47244 * 60.00076 * 14 12 10 16 16 H 1.48501 * 109.46978 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46957 * 299.99676 * 14 12 10 18 18 C 1.53002 * 109.46954 * 175.00093 * 3 2 1 19 19 H 1.09002 * 109.47070 * 174.99771 * 18 3 2 20 20 O 1.42898 * 109.47113 * 54.99641 * 18 3 2 21 21 C 1.50703 * 109.46966 * 294.99681 * 18 3 2 22 22 C 1.38236 * 119.99787 * 84.72732 * 21 18 3 23 23 C 1.38241 * 119.99636 * 179.81278 * 22 21 18 24 24 C 1.38234 * 120.00115 * 0.39672 * 23 22 21 25 25 C 1.38240 * 119.99714 * 359.85290 * 24 23 22 26 26 C 1.38228 * 120.00011 * 265.00375 * 21 18 3 27 27 H 1.08997 * 109.47278 * 300.00309 * 1 2 3 28 28 H 1.09005 * 109.46697 * 60.00115 * 1 2 3 29 29 H 1.09000 * 109.46988 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47278 * 239.99691 * 2 1 3 31 31 H 1.09001 * 109.46965 * 119.99455 * 2 1 3 32 32 H 0.96999 * 119.99735 * 264.99721 * 5 3 2 33 33 H 0.97004 * 119.99621 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.46575 * 299.99954 * 9 8 6 35 35 H 1.08995 * 109.46652 * 59.99667 * 9 8 6 36 36 H 0.96998 * 119.99896 * 179.97438 * 13 12 10 37 37 H 0.96698 * 113.99898 * 299.99778 * 20 18 3 38 38 H 1.07996 * 120.00216 * 359.97438 * 22 21 18 39 39 H 1.08000 * 119.99857 * 180.22806 * 23 22 21 40 40 H 1.07998 * 120.00030 * 179.84064 * 24 23 22 41 41 H 1.08003 * 119.99655 * 179.97438 * 25 24 23 42 42 H 1.08004 * 120.00508 * 359.97379 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0974 -1.2519 6 6 0.4352 2.6644 -1.3670 7 8 -0.3416 2.6320 -0.4322 8 7 0.0788 3.2673 -2.5186 9 6 -1.2446 3.8831 -2.6440 10 6 -1.3913 4.4828 -4.0187 11 1 -0.5799 4.4127 -4.7279 12 6 -2.5613 5.1220 -4.3707 13 7 -3.5493 5.2078 -3.5069 14 14 -2.7429 5.8660 -6.0745 15 1 -2.5941 4.8007 -7.0982 16 1 -4.0844 6.4901 -6.2016 17 1 -1.6949 6.8981 -6.2781 18 6 3.5648 1.4444 0.1257 19 1 3.9355 2.4656 0.0365 20 8 4.1293 0.6404 -0.9121 21 6 3.9589 0.8823 1.4673 22 6 4.0736 -0.4848 1.6371 23 6 4.4389 -1.0003 2.8667 24 6 4.6814 -0.1491 3.9286 25 6 4.5617 1.2178 3.7600 26 6 4.2001 1.7334 2.5294 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.2720 2.1231 -1.9978 33 1 0.6983 3.2928 -3.2646 34 1 -2.0136 3.1252 -2.4946 35 1 -1.3542 4.6649 -1.8925 36 1 -4.3721 5.6578 -3.7544 37 1 3.8426 -0.2829 -0.8942 38 1 3.8804 -1.1500 0.8086 39 1 4.5321 -2.0681 2.9985 40 1 4.9643 -0.5519 4.8899 41 1 4.7508 1.8828 4.5897 42 1 4.1065 2.8013 2.3979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875541040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:46 Heat of formation + Delta-G solvation = -89.493739 kcal Electronic energy + Delta-G solvation = -23295.726289 eV Core-core repulsion = 19853.263678 eV Total energy + Delta-G solvation = -3442.462611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48881 -40.38825 -38.38743 -36.29904 -35.54232 -34.43914 -33.08809 -32.47212 -31.69346 -29.54997 -28.32402 -25.35836 -24.64145 -23.49634 -22.64802 -21.72824 -21.38178 -19.79742 -18.73755 -18.07720 -17.46986 -16.96980 -16.78710 -16.54349 -16.34264 -16.05748 -15.49869 -15.14918 -14.96020 -14.70564 -14.50059 -14.18049 -13.99405 -13.87354 -13.74252 -13.40479 -13.08000 -12.91636 -12.67179 -12.57851 -12.47820 -12.21379 -11.99722 -11.87019 -11.74887 -11.48675 -11.21309 -11.02205 -10.77155 -10.15812 -9.79351 -9.69033 -9.49163 -8.27532 -6.43806 0.37979 0.50751 1.43269 1.47743 1.55661 1.90863 2.32589 2.40071 2.84586 3.07239 3.41950 3.50632 3.62313 3.78860 3.89487 4.07240 4.14577 4.16591 4.30594 4.43262 4.52869 4.62829 4.68512 4.79228 4.96449 5.00435 5.05972 5.08058 5.15943 5.18573 5.29677 5.44681 5.52457 5.55370 5.63031 5.63728 5.64114 5.72597 5.87850 6.10344 6.31131 6.65730 6.68272 7.25832 7.36765 7.80466 8.84561 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034149 B = 0.002911 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.749356 B = 9615.957586 C = 9691.075419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.140 3.860 4 H 0.067 0.933 5 N -0.725 5.725 6 C 0.693 3.307 7 O -0.636 6.636 8 N -0.727 5.727 9 C 0.290 3.710 10 C -0.556 4.556 11 H 0.082 0.918 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.985 3.015 15 H -0.262 1.262 16 H -0.285 1.285 17 H -0.262 1.262 18 C 0.157 3.843 19 H 0.111 0.889 20 O -0.554 6.554 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.125 4.125 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.409 0.591 33 H 0.402 0.598 34 H -0.016 1.016 35 H -0.016 1.016 36 H 0.269 0.731 37 H 0.386 0.614 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.317 -13.439 10.115 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.034 3.966 4 H 0.086 0.914 5 N -0.382 5.382 6 C 0.393 3.607 7 O -0.518 6.518 8 N -0.381 5.381 9 C 0.166 3.834 10 C -0.594 4.594 11 H 0.100 0.900 12 C -0.196 4.196 13 N -0.569 5.569 14 Si 0.808 3.192 15 H -0.187 1.187 16 H -0.210 1.210 17 H -0.187 1.187 18 C 0.097 3.903 19 H 0.129 0.871 20 O -0.363 6.363 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.144 4.144 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.246 0.754 33 H 0.237 0.763 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.077 0.923 37 H 0.237 0.763 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 19.701 -12.835 10.821 25.883 hybrid contribution -0.606 0.277 -0.901 1.121 sum 19.094 -12.558 9.920 24.914 Atomic orbital electron populations 1.21658 0.96695 1.00227 1.00897 1.22043 0.95619 0.95784 1.03659 1.21475 0.94798 0.93979 0.86318 0.91431 1.44888 1.14838 1.60803 1.17691 1.16239 0.82715 0.78574 0.83205 1.90855 1.53525 1.66864 1.40535 1.45331 1.18965 1.59475 1.14288 1.18336 0.78663 0.90458 0.95927 1.21583 1.01856 1.37298 0.98620 0.89995 1.26057 0.94888 0.96121 1.02490 1.70138 1.05906 1.43367 1.37532 0.85209 0.77456 0.78739 0.77814 1.18685 1.21045 1.18700 1.20865 0.89335 0.95765 0.84306 0.87114 1.86603 1.72048 1.25954 1.51651 1.20370 1.01567 0.94967 0.95567 1.21168 0.99345 0.94125 0.98681 1.21462 0.98933 1.01117 0.92717 1.21532 0.99308 0.93483 0.99990 1.21418 0.99560 0.96315 0.97356 1.21225 0.99590 1.00190 0.93355 0.94737 0.95303 0.92207 0.89727 0.88811 0.75446 0.76296 0.99804 0.99836 0.92260 0.76304 0.84103 0.83692 0.84037 0.84500 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.51 71.98 0.61 -3.66 16 2 C -0.13 -2.94 4.55 30.60 0.14 -2.80 16 3 C 0.14 3.52 2.12 44.99 0.10 3.61 16 4 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 5 N -0.73 -21.31 5.02 -457.81 -2.30 -23.60 16 6 C 0.69 28.90 7.13 179.05 1.28 30.17 16 7 O -0.64 -32.10 13.48 -3.99 -0.05 -32.15 16 8 N -0.73 -31.98 5.55 -482.30 -2.68 -34.66 16 9 C 0.29 16.32 5.43 85.63 0.46 16.78 16 10 C -0.56 -30.80 9.28 25.60 0.24 -30.57 16 11 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 12 C 0.00 0.22 5.46 84.66 0.46 0.69 16 13 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 14 Si 0.98 42.86 29.54 68.60 2.03 44.88 16 15 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 18 C 0.16 3.00 3.16 29.85 0.09 3.10 16 19 H 0.11 2.20 8.05 -2.39 -0.02 2.18 16 20 O -0.55 -9.45 12.77 -148.98 -1.90 -11.36 16 21 C -0.12 -2.22 4.74 -19.87 -0.09 -2.31 16 22 C -0.12 -1.67 7.34 22.27 0.16 -1.51 16 23 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 24 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 25 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 26 C -0.13 -2.29 9.68 22.27 0.22 -2.08 16 27 H 0.03 1.21 7.84 -2.39 -0.02 1.19 16 28 H 0.03 1.10 5.64 -2.38 -0.01 1.09 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 1.50 7.00 -2.39 -0.02 1.48 16 31 H 0.09 1.69 5.52 -2.39 -0.01 1.68 16 32 H 0.41 9.89 8.40 -92.71 -0.78 9.11 16 33 H 0.40 14.84 8.34 -92.71 -0.77 14.07 16 34 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H -0.02 -1.04 8.14 -2.39 -0.02 -1.05 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.39 4.35 5.66 -74.06 -0.42 3.93 16 38 H 0.14 1.38 6.09 -2.91 -0.02 1.36 16 39 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 41 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -74.92 341.18 -1.19 -76.12 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.91 Total: 30.67 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 4.34 Total: 6.74 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -4.69 Total: -114.90 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -1.96 Total: -43.51 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -74.92 -1.19 -76.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875541040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.376 kcal (2) G-P(sol) polarization free energy of solvation -74.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds