Wall clock time and date at job start Tue Mar 31 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47234 * 2 1 4 4 H 1.09001 * 109.47002 * 55.00002 * 3 2 1 5 5 N 1.46504 * 109.46883 * 295.00505 * 3 2 1 6 6 C 1.34773 * 120.00111 * 84.99828 * 5 3 2 7 7 O 1.21585 * 120.00055 * 0.02562 * 6 5 3 8 8 N 1.34779 * 120.00093 * 179.97438 * 6 5 3 9 9 C 1.46499 * 120.00149 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.46697 * 180.02562 * 9 8 6 11 11 H 1.07993 * 120.00540 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99677 * 179.97438 * 10 9 8 13 13 N 1.31521 * 120.00084 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00240 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47375 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47499 * 119.99877 * 14 12 10 17 17 H 1.48503 * 109.47682 * 240.00094 * 14 12 10 18 18 C 1.52997 * 109.47164 * 175.00265 * 3 2 1 19 19 H 1.09000 * 109.47140 * 299.99948 * 18 3 2 20 20 O 1.42896 * 109.47412 * 60.00080 * 18 3 2 21 21 C 1.50696 * 109.46910 * 180.02562 * 18 3 2 22 22 C 1.38238 * 120.00044 * 279.72368 * 21 18 3 23 23 C 1.38234 * 120.00204 * 179.78931 * 22 21 18 24 24 C 1.38241 * 119.99541 * 0.44177 * 23 22 21 25 25 C 1.38226 * 120.00449 * 359.81257 * 24 23 22 26 26 C 1.38235 * 119.99934 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47389 * 299.99793 * 1 2 3 29 29 H 1.09003 * 109.47743 * 59.99455 * 1 2 3 30 30 H 1.09007 * 109.46945 * 240.00502 * 2 1 3 31 31 H 1.08995 * 109.47339 * 119.99800 * 2 1 3 32 32 H 0.97003 * 119.99624 * 264.99510 * 5 3 2 33 33 H 0.97003 * 119.99642 * 0.02562 * 8 6 5 34 34 H 1.08997 * 109.46625 * 299.99826 * 9 8 6 35 35 H 1.08993 * 109.47246 * 60.00477 * 9 8 6 36 36 H 0.96997 * 120.00001 * 180.02562 * 13 12 10 37 37 H 0.96698 * 113.99725 * 59.99520 * 20 18 3 38 38 H 1.08002 * 119.99613 * 0.02562 * 22 21 18 39 39 H 1.07996 * 120.00542 * 180.27612 * 23 22 21 40 40 H 1.08001 * 119.99602 * 179.83174 * 24 23 22 41 41 H 1.08003 * 120.00430 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.00409 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6523 2.0975 -1.2518 6 6 0.4350 2.6644 -1.3669 7 8 -0.3413 2.6326 -0.4316 8 7 0.0785 3.2674 -2.5183 9 6 -1.2444 3.8841 -2.6432 10 6 -1.3913 4.4837 -4.0180 11 1 -0.5802 4.4129 -4.7275 12 6 -2.5613 5.1227 -4.3699 13 7 -3.5493 5.2085 -3.5061 14 14 -2.7432 5.8666 -6.0736 15 1 -1.4980 5.6369 -6.8497 16 1 -3.8874 5.2286 -6.7728 17 1 -2.9885 7.3262 -5.9530 18 6 3.5648 1.4444 0.1257 19 1 3.8532 0.9570 1.0570 20 8 4.1346 0.7377 -0.9780 21 6 4.0670 2.8652 0.1263 22 6 4.2044 3.5503 -1.0665 23 6 4.6609 4.8550 -1.0656 24 6 4.9888 5.4717 0.1274 25 6 4.8565 4.7849 1.3197 26 6 4.3958 3.4816 1.3192 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.2718 2.1232 -1.9978 33 1 0.6980 3.2931 -3.2643 34 1 -2.0138 3.1267 -2.4934 35 1 -1.3532 4.6662 -1.8919 36 1 -4.3725 5.6577 -3.7538 37 1 3.9189 1.1166 -1.8411 38 1 3.9513 3.0673 -1.9988 39 1 4.7640 5.3918 -1.9971 40 1 5.3481 6.4902 0.1279 41 1 5.1131 5.2666 2.2517 42 1 4.2920 2.9451 2.2507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875541041.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:51 Heat of formation + Delta-G solvation = -87.618100 kcal Electronic energy + Delta-G solvation = -23797.080319 eV Core-core repulsion = 20354.699041 eV Total energy + Delta-G solvation = -3442.381278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = -0.46 seconds Orbital eigenvalues (eV) -41.54650 -40.22771 -38.39498 -36.29582 -35.52409 -34.44897 -33.04092 -32.52625 -31.70780 -29.46834 -28.50379 -25.21634 -24.55849 -23.54272 -22.33753 -22.00401 -21.45318 -19.97657 -18.69109 -18.02703 -17.70190 -16.83928 -16.74672 -16.58309 -16.16114 -16.08832 -15.43762 -15.04334 -14.82388 -14.74890 -14.58498 -14.23338 -14.00768 -13.83497 -13.76395 -13.40888 -12.91393 -12.86099 -12.75090 -12.67996 -12.44703 -12.20792 -12.07747 -11.91888 -11.70102 -11.42547 -11.12669 -11.03497 -10.79052 -10.11762 -9.80975 -9.66200 -9.52383 -8.27438 -6.43322 0.40121 0.50687 1.43643 1.44852 1.57891 1.88991 2.35696 2.39852 2.82399 3.07951 3.39140 3.46995 3.61189 3.82284 3.93446 4.12324 4.20074 4.24125 4.28650 4.44332 4.57477 4.61796 4.68699 4.82765 4.96415 5.05389 5.08394 5.09957 5.14034 5.25456 5.30418 5.48549 5.54357 5.55119 5.55916 5.62460 5.66652 5.72531 5.88493 6.10201 6.25619 6.59271 6.69264 7.26443 7.35180 7.81570 8.85105 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.004348 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.534465 B = 6438.204926 C = 7567.308709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.139 3.861 4 H 0.072 0.928 5 N -0.724 5.724 6 C 0.697 3.303 7 O -0.634 6.634 8 N -0.726 5.726 9 C 0.290 3.710 10 C -0.551 4.551 11 H 0.083 0.917 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.984 3.016 15 H -0.253 1.253 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.158 3.842 19 H 0.138 0.862 20 O -0.551 6.551 21 C -0.127 4.127 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.122 4.122 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.400 0.600 33 H 0.402 0.598 34 H -0.017 1.017 35 H -0.018 1.018 36 H 0.268 0.732 37 H 0.380 0.620 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.641 -5.997 5.449 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C 0.034 3.966 4 H 0.090 0.910 5 N -0.383 5.383 6 C 0.397 3.603 7 O -0.516 6.516 8 N -0.379 5.379 9 C 0.166 3.834 10 C -0.589 4.589 11 H 0.101 0.899 12 C -0.195 4.195 13 N -0.570 5.570 14 Si 0.807 3.193 15 H -0.176 1.176 16 H -0.205 1.205 17 H -0.206 1.206 18 C 0.098 3.902 19 H 0.156 0.844 20 O -0.357 6.357 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.148 4.148 26 C -0.140 4.140 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.237 0.763 33 H 0.236 0.764 34 H 0.001 0.999 35 H 0.000 1.000 36 H 0.077 0.923 37 H 0.229 0.771 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 19.993 -6.333 6.792 22.044 hybrid contribution -0.611 1.107 -1.566 2.013 sum 19.382 -5.226 5.226 20.743 Atomic orbital electron populations 1.21708 0.96968 1.00032 1.00985 1.21827 0.94713 0.95332 1.03837 1.21588 0.94798 0.93577 0.86672 0.90965 1.44882 1.14834 1.61158 1.17409 1.16160 0.82594 0.78438 0.83152 1.90859 1.53489 1.66710 1.40537 1.45281 1.18918 1.59467 1.14253 1.18325 0.78733 0.90406 0.95909 1.21626 1.01782 1.36997 0.98521 0.89910 1.26038 0.94950 0.96173 1.02370 1.70153 1.05920 1.43517 1.37428 0.85127 0.78785 0.77597 0.77784 1.17609 1.20526 1.20553 1.21113 0.88501 0.88223 0.92369 0.84439 1.86630 1.75868 1.56116 1.17096 1.20615 1.00402 0.97298 0.94386 1.21060 0.99467 0.95172 0.97829 1.21420 0.99087 0.95258 0.99148 1.21489 0.99942 1.00752 0.92815 1.21447 0.99509 0.94828 0.98990 1.21291 0.98893 0.95803 0.98045 0.92602 0.94398 0.95354 0.90486 0.89015 0.76332 0.76367 0.99864 1.00010 0.92332 0.77073 0.85221 0.84769 0.84603 0.84201 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 8.51 71.98 0.61 -3.72 16 2 C -0.12 -2.72 5.39 30.59 0.17 -2.55 16 3 C 0.14 3.34 2.08 44.99 0.09 3.43 16 4 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 5 N -0.72 -19.64 4.14 -457.80 -1.90 -21.53 16 6 C 0.70 27.96 7.13 179.05 1.28 29.24 16 7 O -0.63 -31.39 13.48 -3.98 -0.05 -31.45 16 8 N -0.73 -30.74 5.55 -482.31 -2.68 -33.42 16 9 C 0.29 16.03 5.43 85.63 0.46 16.50 16 10 C -0.55 -29.97 9.28 25.60 0.24 -29.73 16 11 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 12 C 0.00 0.23 5.46 84.65 0.46 0.69 16 13 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 14 Si 0.98 42.32 29.54 68.60 2.03 44.35 16 15 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 C 0.16 2.82 3.08 29.85 0.09 2.91 16 19 H 0.14 1.99 8.00 -2.39 -0.02 1.97 16 20 O -0.55 -9.29 12.61 -148.98 -1.88 -11.16 16 21 C -0.13 -2.55 4.88 -19.86 -0.10 -2.65 16 22 C -0.12 -2.35 8.32 22.27 0.19 -2.16 16 23 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 24 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 25 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 26 C -0.12 -2.38 9.67 22.27 0.22 -2.17 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.30 7.84 -2.38 -0.02 1.28 16 29 H 0.03 1.07 5.65 -2.39 -0.01 1.06 16 30 H 0.08 1.64 7.84 -2.38 -0.02 1.62 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.40 8.11 5.49 -92.71 -0.51 7.60 16 33 H 0.40 13.99 8.34 -92.71 -0.77 13.22 16 34 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 36 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.38 4.74 6.12 -74.06 -0.45 4.28 16 38 H 0.13 2.01 5.51 -2.91 -0.02 1.99 16 39 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.14 2.09 8.04 -2.91 -0.02 2.07 16 Total: -1.00 -74.86 342.33 -0.50 -75.35 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: -0.68 Total: 31.34 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 4.38 Total: 2.70 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.29 Total: -111.13 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.93 Total: -42.61 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -74.86 -0.50 -75.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875541041.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.265 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.46 seconds