Wall clock time and date at job start Tue Mar 31 2020 06:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47104 * 2 1 4 4 H 1.08998 * 109.46992 * 54.64661 * 3 2 1 5 5 C 1.50698 * 109.47307 * 174.64257 * 3 2 1 6 6 H 1.07996 * 120.00473 * 119.99930 * 5 3 2 7 7 C 1.37883 * 120.00036 * 300.00815 * 5 3 2 8 8 N 1.31515 * 119.99938 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 119.99906 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46900 * 90.00430 * 9 7 5 11 11 H 1.48497 * 109.47232 * 210.00634 * 9 7 5 12 12 H 1.48503 * 109.47232 * 330.00648 * 9 7 5 13 13 N 1.46896 * 109.47425 * 294.64486 * 3 2 1 14 14 C 1.46896 * 111.00379 * 154.81406 * 13 3 2 15 15 C 1.50695 * 109.47478 * 185.14940 * 14 13 3 16 16 C 1.38256 * 120.00286 * 92.67534 * 15 14 13 17 17 C 1.50696 * 120.00002 * 359.97438 * 16 15 14 18 18 C 1.38212 * 120.00243 * 179.97438 * 16 15 14 19 19 C 1.38256 * 120.00060 * 359.97438 * 18 16 15 20 20 C 1.38219 * 119.99836 * 0.27402 * 19 18 16 21 21 N 1.48022 * 119.99823 * 179.72586 * 20 19 18 22 22 O 1.21796 * 119.99964 * 38.13450 * 21 20 19 23 23 O 1.21793 * 119.99780 * 218.12416 * 21 20 19 24 24 C 1.38218 * 119.99838 * 272.65206 * 15 14 13 25 25 C 1.50702 * 120.00028 * 359.97438 * 24 15 14 26 26 H 1.09003 * 109.46807 * 305.17707 * 1 2 3 27 27 H 1.08994 * 109.47061 * 65.17462 * 1 2 3 28 28 H 1.08995 * 109.47115 * 185.17965 * 1 2 3 29 29 H 1.09000 * 109.46897 * 240.00427 * 2 1 3 30 30 H 1.08996 * 109.47443 * 120.00303 * 2 1 3 31 31 H 0.97000 * 119.99718 * 179.97438 * 8 7 5 32 32 H 1.00903 * 110.99885 * 278.76522 * 13 3 2 33 33 H 1.09004 * 109.47646 * 65.14547 * 14 13 3 34 34 H 1.08998 * 109.47025 * 305.14616 * 14 13 3 35 35 H 1.08994 * 109.47412 * 275.95268 * 17 16 15 36 36 H 1.09005 * 109.46843 * 35.95117 * 17 16 15 37 37 H 1.08998 * 109.47534 * 155.94622 * 17 16 15 38 38 H 1.08001 * 120.00546 * 179.97438 * 18 16 15 39 39 H 1.07997 * 120.00209 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.46948 * 95.39860 * 25 24 15 41 41 H 1.08996 * 109.46590 * 215.39751 * 25 24 15 42 42 H 1.08995 * 109.46883 * 335.39414 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9832 0.8382 5 6 3.5412 1.4446 0.1327 6 1 4.1510 1.8875 -0.6408 7 6 4.1361 0.8808 1.2415 8 7 5.4462 0.8822 1.3570 9 14 3.0813 0.1151 2.5795 10 1 2.8613 -1.3216 2.2749 11 1 3.7713 0.2437 3.8881 12 1 1.7726 0.8144 2.6391 13 7 1.6588 2.0967 -1.2588 14 6 1.5747 3.5535 -1.0906 15 6 1.0606 4.1773 -2.3624 16 6 -0.2938 4.4032 -2.5233 17 6 -1.2562 4.0252 -1.4270 18 6 -0.7653 4.9758 -3.6895 19 6 0.1177 5.3231 -4.6952 20 6 1.4712 5.0926 -4.5365 21 7 2.4159 5.4589 -5.6156 22 8 2.2421 6.4800 -6.2564 23 8 3.3670 4.7393 -5.8625 24 6 1.9433 4.5240 -3.3679 25 6 3.4198 4.2788 -3.1922 26 1 -0.3633 0.5921 0.8400 27 1 -0.3633 0.4314 -0.9327 28 1 -0.3633 -1.0234 0.0928 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8646 0.4860 2.1372 32 1 2.2988 1.8547 -2.0003 33 1 2.5643 3.9511 -0.8651 34 1 0.8945 3.7860 -0.2712 35 1 -1.5128 2.9697 -1.5168 36 1 -0.7913 4.2049 -0.4575 37 1 -2.1605 4.6276 -1.5135 38 1 -1.8233 5.1519 -3.8154 39 1 -0.2506 5.7709 -5.6063 40 1 3.6870 3.3267 -3.6506 41 1 3.9808 5.0821 -3.6696 42 1 3.6593 4.2502 -2.1292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877364111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:14 Heat of formation + Delta-G solvation = 13.891322 kcal Electronic energy + Delta-G solvation = -23934.120312 eV Core-core repulsion = 20496.140813 eV Total energy + Delta-G solvation = -3437.979499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.16100 -40.03528 -36.67341 -36.47194 -34.01097 -33.81154 -32.09450 -31.02204 -28.64829 -27.99216 -26.91865 -24.86397 -24.71805 -22.51097 -21.22724 -21.04885 -20.03807 -18.65534 -18.55818 -17.58498 -17.12445 -16.03083 -15.45874 -15.31473 -14.71550 -14.54973 -13.92030 -13.73337 -13.39057 -13.28242 -12.99721 -12.79299 -12.62957 -12.55400 -11.99921 -11.99674 -11.91886 -11.76594 -11.54284 -11.45450 -11.21002 -11.08902 -10.93725 -10.81697 -10.65860 -10.38474 -9.90410 -9.60473 -9.34012 -9.16424 -8.98306 -8.67596 -7.56636 -6.22501 -4.24937 0.06129 0.93259 1.23436 1.50007 3.17910 3.19734 3.27994 3.30265 4.27286 4.32741 4.35803 4.53199 4.75338 4.78956 5.04298 5.09945 5.25630 5.31938 5.35625 5.51018 5.58593 5.65314 5.68211 5.78990 5.86937 5.92738 5.94083 6.05254 6.06506 6.15046 6.20437 6.32079 6.44490 6.56983 6.61613 6.62845 6.82225 6.95879 7.12831 7.42191 7.71301 7.81713 8.17543 8.33726 8.78377 9.40039 10.90078 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.004652 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.866817 B = 6017.512240 C = 7051.020627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.185 3.815 4 H 0.033 0.967 5 C -0.551 4.551 6 H 0.074 0.926 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.265 1.265 13 N -0.672 5.672 14 C 0.095 3.905 15 C -0.068 4.068 16 C -0.016 4.016 17 C -0.121 4.121 18 C -0.128 4.128 19 C -0.061 4.061 20 C -0.051 4.051 21 N 0.029 4.971 22 O -0.172 6.172 23 O -0.149 6.149 24 C -0.008 4.008 25 C -0.133 4.133 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.265 0.735 32 H 0.337 0.663 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.483 7.044 -6.922 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.076 3.924 4 H 0.051 0.949 5 C -0.590 4.590 6 H 0.092 0.908 7 C -0.128 4.128 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.190 1.190 13 N -0.301 5.301 14 C -0.034 4.034 15 C -0.069 4.069 16 C -0.017 4.017 17 C -0.177 4.177 18 C -0.147 4.147 19 C -0.081 4.081 20 C -0.134 4.134 21 N 0.550 4.450 22 O -0.386 6.386 23 O -0.369 6.369 24 C -0.010 4.010 25 C -0.189 4.189 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.472 6.735 -6.172 17.114 hybrid contribution 0.859 -0.149 0.411 0.964 sum -13.613 6.586 -5.761 16.183 Atomic orbital electron populations 1.21724 0.97581 0.99259 1.01363 1.21820 0.93805 0.99227 1.00569 1.19604 0.94543 0.90646 0.87591 0.94903 1.21704 0.90386 1.39733 1.07178 0.90819 1.25001 0.94754 0.95157 0.97926 1.69910 1.09052 1.44653 1.29490 0.86827 0.80563 0.79924 0.80730 1.20427 1.22585 1.18991 1.60837 1.55543 1.04326 1.09443 1.20898 1.00261 0.90486 0.91794 1.19825 0.91969 0.98621 0.96533 1.20182 0.93984 0.92434 0.95066 1.20961 0.97102 1.02937 0.96672 1.20967 0.99871 1.01137 0.92730 1.20788 0.89804 0.97024 1.00469 1.20809 0.89806 1.12472 0.90286 1.43629 1.00983 0.99539 1.00848 1.94512 1.79842 1.14483 1.49764 1.94551 1.21413 1.49257 1.71637 1.19681 0.98334 0.92537 0.90469 1.21157 0.88963 1.03904 1.04911 0.94114 0.92172 0.94848 0.92332 0.93582 0.92520 0.84605 0.92848 0.90077 0.89310 0.90198 0.91482 0.84057 0.84085 0.88463 0.91368 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.74 37.16 0.36 -1.99 16 2 C -0.12 -2.33 5.11 -26.73 -0.14 -2.47 16 3 C 0.19 3.87 1.56 -68.87 -0.11 3.77 16 4 H 0.03 0.72 6.77 -51.93 -0.35 0.37 16 5 C -0.55 -14.05 9.02 -34.44 -0.31 -14.36 16 6 H 0.07 2.04 7.98 -52.49 -0.42 1.62 16 7 C 0.08 2.03 5.45 -17.82 -0.10 1.94 16 8 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 9 Si 0.89 20.85 24.41 -169.99 -4.15 16.70 16 10 H -0.28 -6.41 6.83 56.52 0.39 -6.03 16 11 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -5.89 6.53 56.52 0.37 -5.52 16 13 N -0.67 -11.75 5.77 -109.23 -0.63 -12.38 16 14 C 0.09 1.46 4.80 -4.98 -0.02 1.44 16 15 C -0.07 -0.93 5.44 -104.62 -0.57 -1.50 16 16 C -0.02 -0.18 5.88 -104.63 -0.62 -0.80 16 17 C -0.12 -1.14 9.48 36.00 0.34 -0.80 16 18 C -0.13 -1.28 9.68 -39.58 -0.38 -1.66 16 19 C -0.06 -0.70 9.67 -39.58 -0.38 -1.08 16 20 C -0.05 -0.72 6.47 -79.94 -0.52 -1.24 16 21 N 0.03 0.45 4.11 33.96 0.14 0.59 16 22 O -0.17 -2.71 18.96 -29.46 -0.56 -3.27 16 23 O -0.15 -2.45 16.86 -29.46 -0.50 -2.95 16 24 C -0.01 -0.12 5.87 -104.62 -0.61 -0.73 16 25 C -0.13 -1.96 8.32 36.01 0.30 -1.66 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.00 3.22 -51.93 -0.17 0.83 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.34 6.16 8.46 -39.29 -0.33 5.83 16 33 H 0.05 0.91 5.96 -51.93 -0.31 0.60 16 34 H 0.08 1.19 5.73 -51.93 -0.30 0.89 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.79 6.19 -51.93 -0.32 0.47 16 37 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.14 1.35 8.02 -52.49 -0.42 0.93 16 40 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.07 1.00 6.96 -51.93 -0.36 0.63 16 42 H 0.09 1.40 5.79 -51.93 -0.30 1.10 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -28.57 339.13 -8.39 -36.96 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.83 Total: 5.68 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -2.75 Total: -21.15 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.28 Total: -37.09 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -1.06 Total: -6.22 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.15 Total: 16.70 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.57 -8.39 -36.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877364111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.853 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds