Wall clock time and date at job start Tue Mar 31 2020 06:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47104 * 2 1 4 4 H 1.08998 * 109.46992 * 54.64661 * 3 2 1 5 5 C 1.50698 * 109.47307 * 174.64257 * 3 2 1 6 6 H 1.07996 * 120.00473 * 119.99930 * 5 3 2 7 7 C 1.37883 * 120.00036 * 300.00815 * 5 3 2 8 8 N 1.31515 * 119.99938 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 119.99906 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46900 * 90.00430 * 9 7 5 11 11 H 1.48497 * 109.47232 * 210.00634 * 9 7 5 12 12 H 1.48503 * 109.47232 * 330.00648 * 9 7 5 13 13 N 1.46896 * 109.47425 * 294.64486 * 3 2 1 14 14 C 1.46896 * 111.00379 * 154.81406 * 13 3 2 15 15 C 1.50695 * 109.47478 * 185.14940 * 14 13 3 16 16 C 1.38256 * 120.00286 * 92.67534 * 15 14 13 17 17 C 1.50696 * 120.00002 * 359.97438 * 16 15 14 18 18 C 1.38212 * 120.00243 * 179.97438 * 16 15 14 19 19 C 1.38256 * 120.00060 * 359.97438 * 18 16 15 20 20 C 1.38219 * 119.99836 * 0.27402 * 19 18 16 21 21 N 1.48022 * 119.99823 * 179.72586 * 20 19 18 22 22 O 1.21796 * 119.99964 * 38.13450 * 21 20 19 23 23 O 1.21793 * 119.99780 * 218.12416 * 21 20 19 24 24 C 1.38218 * 119.99838 * 272.65206 * 15 14 13 25 25 C 1.50702 * 120.00028 * 359.97438 * 24 15 14 26 26 H 1.09003 * 109.46807 * 305.17707 * 1 2 3 27 27 H 1.08994 * 109.47061 * 65.17462 * 1 2 3 28 28 H 1.08995 * 109.47115 * 185.17965 * 1 2 3 29 29 H 1.09000 * 109.46897 * 240.00427 * 2 1 3 30 30 H 1.08996 * 109.47443 * 120.00303 * 2 1 3 31 31 H 0.97000 * 119.99718 * 179.97438 * 8 7 5 32 32 H 1.00903 * 110.99885 * 278.76522 * 13 3 2 33 33 H 1.09004 * 109.47646 * 65.14547 * 14 13 3 34 34 H 1.08998 * 109.47025 * 305.14616 * 14 13 3 35 35 H 1.08994 * 109.47412 * 275.95268 * 17 16 15 36 36 H 1.09005 * 109.46843 * 35.95117 * 17 16 15 37 37 H 1.08998 * 109.47534 * 155.94622 * 17 16 15 38 38 H 1.08001 * 120.00546 * 179.97438 * 18 16 15 39 39 H 1.07997 * 120.00209 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.46948 * 95.39860 * 25 24 15 41 41 H 1.08996 * 109.46590 * 215.39751 * 25 24 15 42 42 H 1.08995 * 109.46883 * 335.39414 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9832 0.8382 5 6 3.5412 1.4446 0.1327 6 1 4.1510 1.8875 -0.6408 7 6 4.1361 0.8808 1.2415 8 7 5.4462 0.8822 1.3570 9 14 3.0813 0.1151 2.5795 10 1 2.8613 -1.3216 2.2749 11 1 3.7713 0.2437 3.8881 12 1 1.7726 0.8144 2.6391 13 7 1.6588 2.0967 -1.2588 14 6 1.5747 3.5535 -1.0906 15 6 1.0606 4.1773 -2.3624 16 6 -0.2938 4.4032 -2.5233 17 6 -1.2562 4.0252 -1.4270 18 6 -0.7653 4.9758 -3.6895 19 6 0.1177 5.3231 -4.6952 20 6 1.4712 5.0926 -4.5365 21 7 2.4159 5.4589 -5.6156 22 8 2.2421 6.4800 -6.2564 23 8 3.3670 4.7393 -5.8625 24 6 1.9433 4.5240 -3.3679 25 6 3.4198 4.2788 -3.1922 26 1 -0.3633 0.5921 0.8400 27 1 -0.3633 0.4314 -0.9327 28 1 -0.3633 -1.0234 0.0928 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8646 0.4860 2.1372 32 1 2.2988 1.8547 -2.0003 33 1 2.5643 3.9511 -0.8651 34 1 0.8945 3.7860 -0.2712 35 1 -1.5128 2.9697 -1.5168 36 1 -0.7913 4.2049 -0.4575 37 1 -2.1605 4.6276 -1.5135 38 1 -1.8233 5.1519 -3.8154 39 1 -0.2506 5.7709 -5.6063 40 1 3.6870 3.3267 -3.6506 41 1 3.9808 5.0821 -3.6696 42 1 3.6593 4.2502 -2.1292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877364111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:13 Heat of formation + Delta-G solvation = -2.620150 kcal Electronic energy + Delta-G solvation = -23934.836303 eV Core-core repulsion = 20496.140813 eV Total energy + Delta-G solvation = -3438.695490 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.32851 -41.07375 -38.19246 -37.69936 -35.16306 -34.97346 -34.00287 -32.29560 -29.61875 -29.36739 -28.36805 -26.13021 -25.85470 -24.11568 -22.28909 -22.11490 -21.68769 -19.81223 -19.74106 -19.03132 -18.72463 -17.23991 -16.99871 -16.33350 -16.13454 -15.80591 -15.21237 -14.89917 -14.89331 -14.50831 -14.32216 -14.01016 -13.84372 -13.81711 -13.35850 -13.28074 -13.02310 -12.98915 -12.90525 -12.75401 -12.58461 -12.39262 -12.27699 -12.13469 -12.04682 -11.86823 -11.55927 -11.29471 -11.17349 -10.70863 -10.12072 -10.01723 -9.12677 -8.32359 -6.37848 -1.06925 -0.03193 0.14006 0.39440 1.31721 1.35477 1.46044 2.23289 2.30288 3.03836 3.28151 3.35629 3.61282 3.65476 3.82424 3.90229 4.12520 4.28550 4.36616 4.40771 4.46293 4.49321 4.55138 4.67544 4.71507 4.75252 4.81433 4.89755 4.94865 5.01326 5.05919 5.13398 5.20154 5.29836 5.30205 5.44841 5.46521 5.49857 5.63683 5.66274 6.06009 6.35946 6.46754 6.56444 6.75131 7.31303 8.83735 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.004652 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.866817 B = 6017.512240 C = 7051.020627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 C 0.192 3.808 4 H 0.035 0.965 5 C -0.546 4.546 6 H 0.034 0.966 7 C 0.015 3.985 8 N -0.948 5.948 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.305 1.305 12 H -0.239 1.239 13 N -0.656 5.656 14 C 0.098 3.902 15 C -0.081 4.081 16 C -0.007 4.007 17 C -0.121 4.121 18 C -0.110 4.110 19 C -0.054 4.054 20 C -0.070 4.070 21 N 0.031 4.969 22 O -0.163 6.163 23 O -0.190 6.190 24 C -0.024 4.024 25 C -0.125 4.125 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.330 0.670 33 H 0.027 0.973 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.188 0.812 39 H 0.165 0.835 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.296 7.438 -6.822 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.082 3.918 4 H 0.053 0.947 5 C -0.585 4.585 6 H 0.053 0.947 7 C -0.183 4.183 8 N -0.588 5.588 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.234 1.234 12 H -0.162 1.162 13 N -0.284 5.284 14 C -0.031 4.031 15 C -0.082 4.082 16 C -0.008 4.008 17 C -0.177 4.177 18 C -0.128 4.128 19 C -0.073 4.073 20 C -0.152 4.152 21 N 0.548 4.452 22 O -0.382 6.382 23 O -0.401 6.401 24 C -0.026 4.026 25 C -0.182 4.182 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.045 0.955 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.205 0.795 39 H 0.183 0.817 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.267 7.086 -6.090 21.413 hybrid contribution 2.309 -0.145 0.291 2.332 sum -16.957 6.941 -5.799 19.218 Atomic orbital electron populations 1.21632 0.94161 1.00802 1.02362 1.21761 0.96821 0.97570 0.99493 1.19467 0.91114 0.92100 0.89130 0.94746 1.22087 0.93001 1.37771 1.05592 0.94745 1.25864 0.95727 0.96068 1.00616 1.70075 1.11230 1.46922 1.30539 0.85844 0.79782 0.79539 0.77163 1.19650 1.23355 1.16224 1.60854 1.54336 1.05676 1.07550 1.20867 0.99437 0.89045 0.93723 1.19633 0.93237 0.99903 0.95443 1.20510 0.92962 0.91102 0.96257 1.21051 0.97713 1.03593 0.95334 1.21448 1.01676 0.98744 0.90969 1.21220 0.88438 0.95887 1.01780 1.20994 0.90571 1.14028 0.89618 1.43904 1.01024 0.99193 1.01041 1.94473 1.79513 1.14296 1.49913 1.94558 1.22774 1.49892 1.72878 1.19599 0.97626 0.93883 0.91454 1.20985 0.90457 1.03163 1.03548 0.93304 0.91004 0.93037 0.93151 0.95047 0.92730 0.85425 0.95516 0.88608 0.89139 0.90805 0.88146 0.79520 0.81740 0.89632 0.91907 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.74 71.98 0.70 -3.17 16 2 C -0.12 -4.54 5.11 30.59 0.16 -4.39 16 3 C 0.19 7.91 1.56 44.17 0.07 7.98 16 4 H 0.03 1.44 6.77 -2.39 -0.02 1.42 16 5 C -0.55 -28.81 9.02 25.60 0.23 -28.58 16 6 H 0.03 2.04 7.98 -2.91 -0.02 2.01 16 7 C 0.02 0.86 5.45 84.66 0.46 1.32 16 8 N -0.95 -57.79 13.96 21.45 0.30 -57.49 16 9 Si 0.95 43.00 24.41 68.60 1.67 44.67 16 10 H -0.27 -11.84 6.83 99.48 0.68 -11.16 16 11 H -0.31 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.24 -9.70 6.53 99.48 0.65 -9.05 16 13 N -0.66 -22.71 5.77 -499.50 -2.88 -25.59 16 14 C 0.10 3.01 4.80 85.56 0.41 3.42 16 15 C -0.08 -2.10 5.44 -19.87 -0.11 -2.21 16 16 C -0.01 -0.14 5.88 -19.87 -0.12 -0.26 16 17 C -0.12 -1.70 9.48 71.23 0.68 -1.02 16 18 C -0.11 -1.63 9.68 22.27 0.22 -1.41 16 19 C -0.05 -1.04 9.67 22.27 0.22 -0.83 16 20 C -0.07 -1.89 6.47 36.37 0.24 -1.66 16 21 N 0.03 0.97 4.11 -46.46 -0.19 0.78 16 22 O -0.16 -5.01 18.96 18.89 0.36 -4.65 16 23 O -0.19 -6.58 16.86 18.89 0.32 -6.26 16 24 C -0.02 -0.68 5.87 -19.86 -0.12 -0.80 16 25 C -0.13 -4.02 8.32 71.24 0.59 -3.43 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.93 7.91 -2.39 -0.02 1.91 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.03 1.30 3.22 -2.39 -0.01 1.29 16 31 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.33 12.43 8.46 -89.69 -0.76 11.67 16 33 H 0.03 0.97 5.96 -2.38 -0.01 0.95 16 34 H 0.10 2.64 5.73 -2.39 -0.01 2.63 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.17 6.19 -2.38 -0.01 1.15 16 37 H 0.10 0.79 8.05 -2.39 -0.02 0.77 16 38 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.17 2.42 8.02 -2.91 -0.02 2.40 16 40 H 0.09 2.85 8.14 -2.39 -0.02 2.84 16 41 H 0.06 2.02 6.96 -2.39 -0.02 2.00 16 42 H 0.08 2.62 5.79 -2.39 -0.01 2.60 16 Total: -1.00 -65.41 339.13 3.40 -62.01 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.20 Total: 21.57 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 3.62 Total: -35.04 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.77 Total: -82.30 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.68 Total: -10.91 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.67 Total: 44.67 kcal Total: -65.41 3.40 -62.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877364111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.387 kcal (2) G-P(sol) polarization free energy of solvation -65.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds