Wall clock time and date at job start Tue Mar 31 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46986 * 2 1 4 4 C 1.52992 * 109.47497 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47317 * 180.02562 * 4 3 2 6 6 C 1.42902 * 113.99940 * 184.90480 * 5 4 3 7 7 H 1.09000 * 109.47319 * 33.46281 * 6 5 4 8 8 C 1.53003 * 109.46806 * 273.46571 * 6 5 4 9 9 C 1.50698 * 109.47226 * 153.46836 * 6 5 4 10 10 O 1.21269 * 120.00035 * 8.77961 * 9 6 5 11 11 N 1.34781 * 119.99944 * 188.77781 * 9 6 5 12 12 C 1.37214 * 119.99846 * 4.87687 * 11 9 6 13 13 H 1.08002 * 120.00168 * 46.91224 * 12 11 9 14 14 C 1.38891 * 119.99619 * 226.90906 * 12 11 9 15 15 N 1.31419 * 119.99672 * 202.34046 * 14 12 11 16 16 Si 1.86798 * 120.00153 * 22.34125 * 14 12 11 17 17 H 1.48508 * 109.46860 * 87.63560 * 16 14 12 18 18 H 1.48496 * 109.47032 * 207.63232 * 16 14 12 19 19 H 1.48491 * 109.47181 * 327.63520 * 16 14 12 20 20 C 1.39429 * 119.99771 * 184.87455 * 11 9 6 21 21 C 1.39065 * 119.69284 * 185.02254 * 20 11 9 22 22 C 1.38379 * 119.09658 * 179.97438 * 21 20 11 23 23 C 1.38835 * 118.49103 * 359.75072 * 22 21 20 24 24 C 1.38148 * 119.31049 * 0.49818 * 23 22 21 25 25 N 1.31879 * 120.84832 * 359.48805 * 24 23 22 26 26 H 1.09001 * 109.47662 * 60.00053 * 1 2 3 27 27 H 1.09005 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47502 * 300.00021 * 1 2 3 29 29 H 1.08994 * 109.47205 * 240.00189 * 2 1 3 30 30 H 1.08998 * 109.47290 * 119.99599 * 2 1 3 31 31 H 1.09002 * 109.47017 * 59.99681 * 3 2 1 32 32 H 1.09001 * 109.46877 * 300.00428 * 3 2 1 33 33 H 1.09002 * 109.47305 * 59.99786 * 4 3 2 34 34 H 1.09007 * 109.46992 * 300.00328 * 4 3 2 35 35 H 1.08995 * 109.47440 * 184.67341 * 8 6 5 36 36 H 1.08999 * 109.47401 * 304.67135 * 8 6 5 37 37 H 1.09000 * 109.47389 * 64.67152 * 8 6 5 38 38 H 0.97000 * 119.99621 * 180.02562 * 15 14 12 39 39 H 1.07997 * 120.45503 * 359.95862 * 21 20 11 40 40 H 1.07999 * 120.75579 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.34073 * 180.26235 * 23 22 21 42 42 H 1.07996 * 119.57345 * 179.77518 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 8 4.0461 2.7900 0.0000 6 6 5.4661 2.9045 -0.1122 7 1 5.8478 2.0960 -0.7356 8 6 6.0963 2.8166 1.2793 9 6 5.8152 4.2298 -0.7389 10 8 4.9529 5.0647 -0.9119 11 7 7.0860 4.4872 -1.1072 12 6 8.0417 3.5081 -1.0043 13 1 7.8368 2.5128 -1.3702 14 6 9.2728 3.7970 -0.4298 15 7 10.3185 3.0506 -0.7066 16 14 9.4422 5.2464 0.7364 17 1 9.1222 4.8091 2.1191 18 1 10.8349 5.7595 0.6892 19 1 8.5040 6.3225 0.3280 20 6 7.4292 5.7484 -1.5926 21 6 8.7158 5.9765 -2.0686 22 6 9.0430 7.2327 -2.5481 23 6 8.0666 8.2198 -2.5397 24 6 6.8103 7.9241 -2.0472 25 7 6.5273 6.7174 -1.5966 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.9329 0.9290 -0.8908 34 1 3.9336 0.9287 0.8891 35 1 7.1702 2.9868 1.2032 36 1 5.6536 3.5733 1.9271 37 1 5.9140 1.8273 1.6989 38 1 11.1781 3.2522 -0.3051 39 1 9.4497 5.1843 -2.0640 40 1 10.0339 7.4394 -2.9244 41 1 8.2883 9.2095 -2.9108 42 1 6.0487 8.6897 -2.0353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:13 Heat of formation + Delta-G solvation = -29.064679 kcal Electronic energy + Delta-G solvation = -23954.112033 eV Core-core repulsion = 20514.269822 eV Total energy + Delta-G solvation = -3439.842211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.20869 -38.61645 -37.24966 -35.22777 -34.86700 -32.46634 -31.51151 -31.17321 -29.31176 -28.56234 -25.48874 -24.28271 -23.25201 -22.48374 -21.70503 -21.11456 -19.33473 -18.37667 -16.65801 -16.06905 -15.97456 -15.73981 -15.36895 -14.97147 -14.57717 -14.52130 -14.04860 -13.76461 -13.69462 -13.18180 -13.09895 -12.93444 -12.50908 -12.35170 -12.19797 -12.02124 -11.66738 -11.60034 -11.41077 -11.13564 -11.09475 -11.00825 -10.74839 -10.59706 -10.50755 -10.22198 -9.73082 -9.33531 -9.12627 -9.01533 -8.73171 -8.09257 -7.29203 -6.77276 -4.50372 1.87089 2.09015 3.03281 3.10485 3.24212 3.50149 3.61174 3.96575 4.31421 4.55166 4.86595 4.90281 5.03930 5.09686 5.27928 5.32046 5.47110 5.49484 5.57557 5.64052 5.71452 5.73670 5.77056 5.80330 5.83310 5.86538 5.98548 6.04412 6.10490 6.24120 6.25478 6.32922 6.37373 6.56177 6.73602 6.80494 6.92740 7.12460 7.43681 7.60603 7.83453 8.04133 8.56506 8.76796 9.10297 9.49551 10.28562 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.004708 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.994955 B = 5946.057551 C = 6889.198721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.060 3.940 5 O -0.367 6.367 6 C 0.092 3.908 7 H 0.085 0.915 8 C -0.166 4.166 9 C 0.495 3.505 10 O -0.495 6.495 11 N -0.405 5.405 12 C -0.373 4.373 13 H 0.112 0.888 14 C 0.090 3.910 15 N -0.839 5.839 16 Si 0.854 3.146 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.250 1.250 20 C 0.375 3.625 21 C -0.207 4.207 22 C -0.064 4.064 23 C -0.238 4.238 24 C 0.121 3.879 25 N -0.494 5.494 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.281 0.719 39 H 0.154 0.846 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 -2.112 0.971 6.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.156 4.156 4 C -0.017 4.017 5 O -0.285 6.285 6 C 0.031 3.969 7 H 0.103 0.897 8 C -0.224 4.224 9 C 0.283 3.717 10 O -0.367 6.367 11 N -0.120 5.120 12 C -0.499 4.499 13 H 0.130 0.870 14 C -0.121 4.121 15 N -0.470 5.470 16 Si 0.678 3.322 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.174 1.174 20 C 0.145 3.855 21 C -0.230 4.230 22 C -0.090 4.090 23 C -0.260 4.260 24 C -0.038 4.038 25 N -0.210 5.210 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.868 -1.893 1.284 8.194 hybrid contribution 1.549 0.544 0.285 1.667 sum -6.318 -1.349 1.569 6.649 Atomic orbital electron populations 1.21752 0.95650 1.01420 1.02007 1.21444 0.96001 0.96367 1.02133 1.21533 0.93865 0.96769 1.03420 1.22534 0.94756 0.84419 0.99943 1.87967 1.20667 1.25355 1.94522 1.21636 0.81103 0.96531 0.97589 0.89731 1.22177 1.03588 1.01515 0.95099 1.20629 0.82908 0.88840 0.79323 1.90682 1.47397 1.47204 1.51424 1.41493 1.08787 1.08532 1.53150 1.18947 0.93996 0.92792 1.44124 0.87028 1.25378 0.94845 0.96910 0.94982 1.69793 0.99980 1.38994 1.38260 0.87241 0.79054 0.83910 0.82025 1.19627 1.20031 1.17385 1.19011 0.89416 0.87012 0.90067 1.21919 0.98138 0.98884 1.04074 1.21263 0.98857 0.92584 0.96270 1.21765 0.95613 1.00295 1.08367 1.22455 0.94854 0.92995 0.93482 1.67685 1.34295 1.00200 1.18851 0.92639 0.92827 0.92678 0.91880 0.91914 0.91200 0.91132 0.93530 0.93517 0.88877 0.92482 0.92466 0.90818 0.82826 0.85752 0.86149 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.21 5.93 -26.73 -0.16 -1.36 16 3 C -0.12 -1.49 5.58 -26.73 -0.15 -1.64 16 4 C 0.06 0.89 5.78 37.15 0.21 1.11 16 5 O -0.37 -7.20 9.55 -54.99 -0.52 -7.73 16 6 C 0.09 1.88 2.42 -27.88 -0.07 1.81 16 7 H 0.08 1.63 6.91 -51.93 -0.36 1.27 16 8 C -0.17 -3.13 9.34 37.16 0.35 -2.78 16 9 C 0.50 12.13 6.96 -10.98 -0.08 12.06 16 10 O -0.49 -13.41 14.82 -14.19 -0.21 -13.62 16 11 N -0.40 -10.02 2.24 -60.71 -0.14 -10.16 16 12 C -0.37 -9.11 6.61 -14.90 -0.10 -9.21 16 13 H 0.11 2.79 7.36 -52.49 -0.39 2.40 16 14 C 0.09 2.20 3.41 -17.49 -0.06 2.14 16 15 N -0.84 -20.97 13.96 55.49 0.77 -20.19 16 16 Si 0.85 19.75 25.31 -169.99 -4.30 15.45 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.25 -6.17 5.24 56.52 0.30 -5.88 16 20 C 0.38 9.24 4.98 -154.64 -0.77 8.47 16 21 C -0.21 -4.64 6.37 -39.22 -0.25 -4.89 16 22 C -0.06 -1.21 10.17 -39.31 -0.40 -1.61 16 23 C -0.24 -4.20 10.11 -39.39 -0.40 -4.60 16 24 C 0.12 2.40 11.18 -17.56 -0.20 2.20 16 25 N -0.49 -12.04 7.92 -12.34 -0.10 -12.14 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.65 7.97 -51.93 -0.41 0.24 16 34 H 0.05 0.62 7.84 -51.92 -0.41 0.22 16 35 H 0.09 1.91 6.02 -51.93 -0.31 1.60 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.90 7.84 -51.93 -0.41 0.49 16 38 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 39 H 0.15 3.60 5.29 -52.49 -0.28 3.32 16 40 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.14 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -29.94 338.83 -7.54 -37.48 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.45 Total: 5.06 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.69 Total: 0.74 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.54 Total: -42.49 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.74 Total: -21.35 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.30 Total: 15.45 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.94 -7.54 -37.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.414 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds