Wall clock time and date at job start Tue Mar 31 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46986 * 2 1 4 4 C 1.52992 * 109.47497 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47317 * 180.02562 * 4 3 2 6 6 C 1.42902 * 113.99940 * 184.90480 * 5 4 3 7 7 H 1.09000 * 109.47319 * 33.46281 * 6 5 4 8 8 C 1.53003 * 109.46806 * 273.46571 * 6 5 4 9 9 C 1.50698 * 109.47226 * 153.46836 * 6 5 4 10 10 O 1.21269 * 120.00035 * 8.77961 * 9 6 5 11 11 N 1.34781 * 119.99944 * 188.77781 * 9 6 5 12 12 C 1.37214 * 119.99846 * 4.87687 * 11 9 6 13 13 H 1.08002 * 120.00168 * 46.91224 * 12 11 9 14 14 C 1.38891 * 119.99619 * 226.90906 * 12 11 9 15 15 N 1.31419 * 119.99672 * 202.34046 * 14 12 11 16 16 Si 1.86798 * 120.00153 * 22.34125 * 14 12 11 17 17 H 1.48508 * 109.46860 * 87.63560 * 16 14 12 18 18 H 1.48496 * 109.47032 * 207.63232 * 16 14 12 19 19 H 1.48491 * 109.47181 * 327.63520 * 16 14 12 20 20 C 1.39429 * 119.99771 * 184.87455 * 11 9 6 21 21 C 1.39065 * 119.69284 * 185.02254 * 20 11 9 22 22 C 1.38379 * 119.09658 * 179.97438 * 21 20 11 23 23 C 1.38835 * 118.49103 * 359.75072 * 22 21 20 24 24 C 1.38148 * 119.31049 * 0.49818 * 23 22 21 25 25 N 1.31879 * 120.84832 * 359.48805 * 24 23 22 26 26 H 1.09001 * 109.47662 * 60.00053 * 1 2 3 27 27 H 1.09005 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47502 * 300.00021 * 1 2 3 29 29 H 1.08994 * 109.47205 * 240.00189 * 2 1 3 30 30 H 1.08998 * 109.47290 * 119.99599 * 2 1 3 31 31 H 1.09002 * 109.47017 * 59.99681 * 3 2 1 32 32 H 1.09001 * 109.46877 * 300.00428 * 3 2 1 33 33 H 1.09002 * 109.47305 * 59.99786 * 4 3 2 34 34 H 1.09007 * 109.46992 * 300.00328 * 4 3 2 35 35 H 1.08995 * 109.47440 * 184.67341 * 8 6 5 36 36 H 1.08999 * 109.47401 * 304.67135 * 8 6 5 37 37 H 1.09000 * 109.47389 * 64.67152 * 8 6 5 38 38 H 0.97000 * 119.99621 * 180.02562 * 15 14 12 39 39 H 1.07997 * 120.45503 * 359.95862 * 21 20 11 40 40 H 1.07999 * 120.75579 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.34073 * 180.26235 * 23 22 21 42 42 H 1.07996 * 119.57345 * 179.77518 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 8 4.0461 2.7900 0.0000 6 6 5.4661 2.9045 -0.1122 7 1 5.8478 2.0960 -0.7356 8 6 6.0963 2.8166 1.2793 9 6 5.8152 4.2298 -0.7389 10 8 4.9529 5.0647 -0.9119 11 7 7.0860 4.4872 -1.1072 12 6 8.0417 3.5081 -1.0043 13 1 7.8368 2.5128 -1.3702 14 6 9.2728 3.7970 -0.4298 15 7 10.3185 3.0506 -0.7066 16 14 9.4422 5.2464 0.7364 17 1 9.1222 4.8091 2.1191 18 1 10.8349 5.7595 0.6892 19 1 8.5040 6.3225 0.3280 20 6 7.4292 5.7484 -1.5926 21 6 8.7158 5.9765 -2.0686 22 6 9.0430 7.2327 -2.5481 23 6 8.0666 8.2198 -2.5397 24 6 6.8103 7.9241 -2.0472 25 7 6.5273 6.7174 -1.5966 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.9329 0.9290 -0.8908 34 1 3.9336 0.9287 0.8891 35 1 7.1702 2.9868 1.2032 36 1 5.6536 3.5733 1.9271 37 1 5.9140 1.8273 1.6989 38 1 11.1781 3.2522 -0.3051 39 1 9.4497 5.1843 -2.0640 40 1 10.0339 7.4394 -2.9244 41 1 8.2883 9.2095 -2.9108 42 1 6.0487 8.6897 -2.0353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892464578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:10 Heat of formation + Delta-G solvation = -45.898651 kcal Electronic energy + Delta-G solvation = -23954.842009 eV Core-core repulsion = 20514.269822 eV Total energy + Delta-G solvation = -3440.572186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.93279 -40.21997 -38.74617 -37.04011 -35.90196 -34.31368 -33.14490 -32.67554 -30.80815 -29.70790 -27.33985 -25.83634 -24.48486 -23.98918 -23.26825 -22.06083 -21.11026 -20.08712 -18.34303 -17.78047 -17.43679 -17.06192 -16.86935 -16.57079 -16.25325 -16.07461 -15.41230 -15.38879 -14.96060 -14.81271 -14.56424 -14.33817 -13.99450 -13.85070 -13.69878 -13.24555 -13.15086 -13.12546 -12.90771 -12.63018 -12.42180 -12.25472 -12.07150 -11.94351 -11.78746 -11.53635 -11.48193 -10.94747 -10.81452 -10.56859 -10.51920 -9.81183 -9.02757 -8.66521 -6.40823 0.24092 0.50850 1.18449 1.24525 1.37967 1.80241 1.93818 2.12921 2.63382 2.96557 3.18536 3.65310 3.93157 3.98044 4.07438 4.07840 4.14087 4.19489 4.23815 4.32834 4.42082 4.42431 4.45985 4.56429 4.69176 4.77702 4.81918 4.92001 4.96120 4.98532 5.05556 5.16903 5.24197 5.26232 5.32309 5.35830 5.44505 5.45770 5.83199 5.93556 6.15394 6.27214 6.75086 6.99042 7.30435 7.71193 8.42608 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.004708 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.994955 B = 5946.057551 C = 6889.198721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.114 4.114 4 C 0.051 3.949 5 O -0.391 6.391 6 C 0.100 3.900 7 H 0.092 0.908 8 C -0.158 4.158 9 C 0.481 3.519 10 O -0.535 6.535 11 N -0.414 5.414 12 C -0.369 4.369 13 H 0.099 0.901 14 C 0.080 3.920 15 N -0.862 5.862 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.262 1.262 19 H -0.272 1.272 20 C 0.341 3.659 21 C -0.225 4.225 22 C -0.060 4.060 23 C -0.212 4.212 24 C 0.104 3.896 25 N -0.533 5.533 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.288 0.712 39 H 0.139 0.861 40 H 0.164 0.836 41 H 0.172 0.828 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 -1.419 0.932 6.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.025 4.025 5 O -0.310 6.310 6 C 0.039 3.961 7 H 0.109 0.891 8 C -0.215 4.215 9 C 0.270 3.730 10 O -0.410 6.410 11 N -0.129 5.129 12 C -0.495 4.495 13 H 0.116 0.884 14 C -0.130 4.130 15 N -0.495 5.495 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.187 1.187 19 H -0.197 1.197 20 C 0.112 3.888 21 C -0.249 4.249 22 C -0.086 4.086 23 C -0.233 4.233 24 C -0.054 4.054 25 N -0.250 5.250 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.157 0.843 40 H 0.182 0.818 41 H 0.190 0.810 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.432 -1.202 1.239 7.630 hybrid contribution 1.394 0.455 0.192 1.478 sum -6.038 -0.748 1.432 6.251 Atomic orbital electron populations 1.21754 0.94715 1.02392 1.01935 1.21428 0.96767 0.94303 1.02913 1.21549 0.92396 0.98668 1.02605 1.22865 0.96014 0.82466 1.01122 1.87946 1.19961 1.28417 1.94661 1.21528 0.82006 0.94430 0.98119 0.89060 1.22096 1.01937 1.03286 0.94189 1.21396 0.82604 0.90034 0.78925 1.90627 1.48233 1.48814 1.53348 1.41600 1.08826 1.08958 1.53549 1.18787 0.94181 0.92478 1.44066 0.88388 1.25536 0.94522 0.97733 0.95206 1.69801 1.00469 1.40044 1.39177 0.86689 0.78837 0.82023 0.80829 1.19798 1.18679 1.19679 1.19272 0.90483 0.87092 0.91909 1.21929 0.97080 1.00320 1.05525 1.21796 1.00972 0.91201 0.94628 1.22282 0.93859 1.01982 1.05204 1.23143 0.96996 0.92259 0.92977 1.67627 1.35427 1.01778 1.20159 0.92969 0.91316 0.92572 0.91409 0.90807 0.91551 0.92464 0.92917 0.91625 0.90781 0.93134 0.89056 0.90155 0.84340 0.81805 0.81044 0.80790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.69 16 2 C -0.12 -2.13 5.93 30.60 0.18 -1.94 16 3 C -0.11 -2.84 5.58 30.59 0.17 -2.67 16 4 C 0.05 1.49 5.78 71.98 0.42 1.90 16 5 O -0.39 -15.58 9.55 -130.09 -1.24 -16.82 16 6 C 0.10 4.16 2.42 29.85 0.07 4.23 16 7 H 0.09 3.60 6.91 -2.39 -0.02 3.58 16 8 C -0.16 -5.94 9.34 71.98 0.67 -5.26 16 9 C 0.48 24.43 6.96 87.66 0.61 25.04 16 10 O -0.53 -30.18 14.82 15.89 0.24 -29.95 16 11 N -0.41 -21.11 2.24 -464.38 -1.04 -22.15 16 12 C -0.37 -18.53 6.61 84.01 0.55 -17.97 16 13 H 0.10 5.08 7.36 -2.91 -0.02 5.06 16 14 C 0.08 3.93 3.41 84.91 0.29 4.22 16 15 N -0.86 -43.16 13.96 21.65 0.30 -42.85 16 16 Si 0.89 40.80 25.31 68.60 1.74 42.53 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.27 -13.47 5.24 99.48 0.52 -12.95 16 20 C 0.34 17.04 4.98 132.91 0.66 17.70 16 21 C -0.23 -10.00 6.37 22.50 0.14 -9.86 16 22 C -0.06 -2.10 10.17 22.45 0.23 -1.87 16 23 C -0.21 -6.65 10.11 22.39 0.23 -6.42 16 24 C 0.10 3.94 11.18 84.66 0.95 4.88 16 25 N -0.53 -26.16 7.92 -192.96 -1.53 -27.69 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.45 7.97 -2.39 -0.02 1.43 16 34 H 0.07 1.64 7.84 -2.38 -0.02 1.62 16 35 H 0.07 3.08 6.02 -2.39 -0.01 3.07 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.09 2.75 7.84 -2.39 -0.02 2.73 16 38 H 0.29 13.38 8.31 -92.71 -0.77 12.61 16 39 H 0.14 6.52 5.29 -2.91 -0.02 6.50 16 40 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.17 3.65 8.06 -2.91 -0.02 3.62 16 42 H 0.18 5.28 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -67.17 338.83 5.16 -62.01 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.81 Total: 24.63 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 5.89 Total: 10.29 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -2.27 Total: -92.69 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -1.01 Total: -46.77 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.74 Total: 42.53 kcal Total: -67.17 5.16 -62.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.111 kcal (2) G-P(sol) polarization free energy of solvation -67.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds