Wall clock time and date at job start Tue Mar 31 2020 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47083 * 2 1 4 4 H 1.09002 * 109.47511 * 53.07079 * 3 2 1 5 5 C 1.53003 * 109.47248 * 293.06925 * 3 2 1 6 6 C 1.53002 * 109.47380 * 173.06827 * 3 2 1 7 7 H 1.08999 * 109.46826 * 65.61900 * 6 3 2 8 8 O 1.42898 * 109.47020 * 305.62478 * 6 3 2 9 9 C 1.42900 * 114.00327 * 150.40854 * 8 6 3 10 10 C 1.50694 * 109.47561 * 185.62085 * 6 3 2 11 11 O 1.21271 * 119.99707 * 97.08866 * 10 6 3 12 12 N 1.34774 * 120.00015 * 277.09108 * 10 6 3 13 13 C 1.37207 * 120.00210 * 3.18745 * 12 10 6 14 14 H 1.07991 * 120.00079 * 111.15739 * 13 12 10 15 15 C 1.38893 * 119.99962 * 291.15642 * 13 12 10 16 16 N 1.31412 * 119.99959 * 170.19365 * 15 13 12 17 17 Si 1.86803 * 120.00024 * 349.92341 * 15 13 12 18 18 H 1.48491 * 109.47427 * 96.01673 * 17 15 13 19 19 H 1.48500 * 109.46855 * 216.01903 * 17 15 13 20 20 H 1.48506 * 109.47055 * 336.01495 * 17 15 13 21 21 C 1.39427 * 119.99608 * 183.18632 * 12 10 6 22 22 C 1.39071 * 119.69436 * 184.72070 * 21 12 10 23 23 C 1.38386 * 119.09952 * 179.77279 * 22 21 12 24 24 C 1.38824 * 118.48614 * 0.49654 * 23 22 21 25 25 C 1.38147 * 119.31941 * 359.75013 * 24 23 22 26 26 N 1.31886 * 120.84760 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46850 * 300.00180 * 1 2 3 29 29 H 1.08996 * 109.47108 * 60.00017 * 1 2 3 30 30 H 1.09000 * 109.46850 * 239.99820 * 2 1 3 31 31 H 1.09005 * 109.46988 * 120.00180 * 2 1 3 32 32 H 1.09000 * 109.46879 * 186.81423 * 5 3 2 33 33 H 1.08999 * 109.46764 * 306.81536 * 5 3 2 34 34 H 1.09000 * 109.46802 * 66.81172 * 5 3 2 35 35 H 1.09002 * 109.47655 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47114 * 299.99998 * 9 8 6 37 37 H 1.08998 * 109.46948 * 59.99885 * 9 8 6 38 38 H 0.97000 * 119.99666 * 184.73403 * 16 15 13 39 39 H 1.08005 * 120.45173 * 0.02562 * 22 21 12 40 40 H 1.07993 * 120.75454 * 180.26948 * 23 22 21 41 41 H 1.08011 * 120.33967 * 179.72427 * 24 23 22 42 42 H 1.07997 * 119.57768 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5790 1.9909 0.8215 5 6 1.6771 2.1117 -1.3272 6 6 3.5601 1.4460 0.1741 7 1 4.0265 0.9854 -0.6967 8 8 3.9069 0.7071 1.3470 9 6 5.1883 0.0782 1.2800 10 6 4.0466 2.8656 0.3125 11 8 4.2458 3.3336 1.4134 12 7 4.2602 3.6150 -0.7871 13 6 3.9726 3.1081 -2.0293 14 1 3.1515 3.5140 -2.6013 15 6 4.7377 2.0729 -2.5510 16 7 4.3516 1.4581 -3.6464 17 14 6.3192 1.5595 -1.6998 18 1 6.0480 0.4056 -0.8053 19 1 7.3260 1.1695 -2.7194 20 1 6.8411 2.6954 -0.8980 21 6 4.7733 4.9054 -0.6624 22 6 4.8989 5.7088 -1.7905 23 6 5.4053 6.9892 -1.6519 24 6 5.7797 7.4197 -0.3863 25 6 5.6320 6.5661 0.6898 26 7 5.1412 5.3527 0.5281 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.1430 3.0958 -1.3771 33 1 2.0352 1.4977 -2.1535 34 1 0.5945 2.2183 -1.3962 35 1 5.3771 -0.4617 2.2080 36 1 5.2073 -0.6197 0.4430 37 1 5.9583 0.8366 1.1383 38 1 4.8480 0.6912 -3.9728 39 1 4.6015 5.3400 -2.7611 40 1 5.5103 7.6374 -2.5092 41 1 6.1826 8.4118 -0.2445 42 1 5.9223 6.8965 1.6761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892470120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:23 Heat of formation + Delta-G solvation = -13.777143 kcal Electronic energy + Delta-G solvation = -25419.647438 eV Core-core repulsion = 21980.468145 eV Total energy + Delta-G solvation = -3439.179293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.35293 -38.84952 -36.87330 -35.57745 -34.72832 -32.43577 -31.63998 -30.31847 -29.04739 -27.19972 -25.63766 -25.03794 -23.88054 -22.70712 -21.95824 -19.85076 -19.24700 -18.18307 -16.94465 -16.34902 -15.88587 -15.43830 -14.96918 -14.90091 -14.42597 -14.37328 -14.10581 -13.67533 -13.55359 -13.14495 -12.91914 -12.64368 -12.43856 -12.39157 -12.03463 -11.89764 -11.65088 -11.42657 -11.20699 -11.07497 -10.95253 -10.54013 -10.37494 -10.09169 -9.94551 -9.81862 -9.56735 -9.44719 -9.13936 -8.91045 -8.88004 -8.05647 -7.18948 -6.66449 -4.66225 1.83881 2.02458 2.85444 3.04564 3.16526 3.55605 3.79842 3.91881 4.36995 4.53548 4.74486 5.16687 5.35836 5.39758 5.47729 5.53567 5.67641 5.69798 5.72596 5.81144 5.90523 5.92823 6.00215 6.06118 6.11138 6.14633 6.26916 6.30218 6.45711 6.47705 6.64015 6.68633 6.72203 6.79893 6.86139 7.10120 7.18996 7.40801 7.54595 7.56312 7.80331 8.14351 8.55167 8.75048 9.03051 9.49937 10.34558 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.007294 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.373047 B = 3837.641749 C = 4057.809307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.066 4.066 4 H 0.066 0.934 5 C -0.154 4.154 6 C 0.083 3.917 7 H 0.096 0.904 8 O -0.365 6.365 9 C 0.029 3.971 10 C 0.480 3.520 11 O -0.497 6.497 12 N -0.414 5.414 13 C -0.358 4.358 14 H 0.116 0.884 15 C 0.087 3.913 16 N -0.846 5.846 17 Si 0.831 3.169 18 H -0.247 1.247 19 H -0.276 1.276 20 H -0.259 1.259 21 C 0.362 3.638 22 C -0.189 4.189 23 C -0.064 4.064 24 C -0.234 4.234 25 C 0.117 3.883 26 N -0.493 5.493 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.280 0.720 39 H 0.146 0.854 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 0.624 1.926 2.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.085 4.085 4 H 0.084 0.916 5 C -0.211 4.211 6 C 0.022 3.978 7 H 0.113 0.887 8 O -0.282 6.282 9 C -0.068 4.068 10 C 0.268 3.732 11 O -0.369 6.369 12 N -0.132 5.132 13 C -0.485 4.485 14 H 0.133 0.867 15 C -0.123 4.123 16 N -0.479 5.479 17 Si 0.655 3.345 18 H -0.172 1.172 19 H -0.202 1.202 20 H -0.183 1.183 21 C 0.133 3.867 22 C -0.213 4.213 23 C -0.090 4.090 24 C -0.256 4.256 25 C -0.042 4.042 26 N -0.208 5.208 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.163 0.837 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.026 0.029 3.222 3.381 hybrid contribution 1.384 0.292 -0.771 1.611 sum 0.359 0.320 2.451 2.498 Atomic orbital electron populations 1.21773 0.96246 1.00783 1.01718 1.21508 0.95351 0.96368 1.02062 1.20988 0.90741 0.96958 0.99801 0.91564 1.22477 0.98665 1.04300 0.95611 1.22159 0.97736 0.89244 0.88674 0.88687 1.87874 1.34292 1.66849 1.39196 1.23042 0.85794 0.96408 1.01558 1.21738 0.78093 0.88979 0.84341 1.90664 1.47956 1.72589 1.25688 1.41750 1.54524 1.09236 1.07643 1.18939 1.16364 1.19898 0.93256 0.86651 1.25518 0.96321 0.96124 0.94348 1.69581 1.39426 1.18880 1.19973 0.87612 0.84730 0.81401 0.80738 1.17162 1.20177 1.18277 1.19620 0.90045 0.88237 0.88820 1.21681 1.05148 0.94191 1.00252 1.21287 0.95565 0.95106 0.97062 1.21801 1.08085 1.01455 0.94257 1.22498 0.94342 0.88907 0.98408 1.67755 1.13381 1.15387 1.24299 0.93397 0.93178 0.92439 0.92033 0.91666 0.88949 0.90451 0.94785 0.89899 0.93685 0.94631 0.90902 0.83660 0.85695 0.86160 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.70 37.16 0.36 -1.72 16 2 C -0.12 -1.92 5.29 -26.73 -0.14 -2.06 16 3 C -0.07 -1.28 2.13 -90.62 -0.19 -1.47 16 4 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 5 C -0.15 -3.00 7.07 37.16 0.26 -2.73 16 6 C 0.08 1.80 1.32 -27.88 -0.04 1.77 16 7 H 0.10 2.14 3.63 -51.93 -0.19 1.95 16 8 O -0.36 -7.75 8.96 -54.01 -0.48 -8.23 16 9 C 0.03 0.53 9.36 101.05 0.95 1.48 16 10 C 0.48 11.80 5.18 -10.99 -0.06 11.74 16 11 O -0.50 -13.45 14.93 -13.22 -0.20 -13.64 16 12 N -0.41 -9.96 1.52 -60.71 -0.09 -10.05 16 13 C -0.36 -8.38 3.74 -14.90 -0.06 -8.44 16 14 H 0.12 2.78 6.74 -52.49 -0.35 2.43 16 15 C 0.09 2.08 4.11 -17.49 -0.07 2.00 16 16 N -0.85 -20.46 13.95 55.49 0.77 -19.68 16 17 Si 0.83 18.92 24.09 -169.99 -4.09 14.82 16 18 H -0.25 -5.15 3.59 56.52 0.20 -4.95 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.26 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.36 8.50 7.28 -154.64 -1.13 7.37 16 22 C -0.19 -3.84 9.34 -39.22 -0.37 -4.21 16 23 C -0.06 -1.08 10.17 -39.31 -0.40 -1.48 16 24 C -0.23 -3.80 10.11 -39.40 -0.40 -4.20 16 25 C 0.12 2.21 11.18 -17.56 -0.20 2.02 16 26 N -0.49 -11.57 7.91 -12.34 -0.10 -11.67 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.80 6.79 -51.93 -0.35 0.44 16 30 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 31 H 0.06 1.08 7.32 -51.93 -0.38 0.70 16 32 H 0.09 1.99 4.00 -51.93 -0.21 1.78 16 33 H 0.08 1.62 7.51 -51.93 -0.39 1.23 16 34 H 0.03 0.58 6.96 -51.93 -0.36 0.22 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.04 0.78 6.87 -51.93 -0.36 0.43 16 37 H 0.04 0.71 6.74 -51.93 -0.35 0.36 16 38 H 0.28 6.43 8.32 -40.82 -0.34 6.09 16 39 H 0.15 2.91 7.00 -52.48 -0.37 2.54 16 40 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 42 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -28.52 321.88 -6.84 -35.35 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.02 Total: 8.17 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.47 Total: 0.07 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.58 Total: -41.40 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.68 Total: -21.87 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.09 Total: 14.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.52 -6.84 -35.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.577 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds