Wall clock time and date at job start Tue Mar 31 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47083 * 2 1 4 4 H 1.09002 * 109.47511 * 53.07079 * 3 2 1 5 5 C 1.53003 * 109.47248 * 293.06925 * 3 2 1 6 6 C 1.53002 * 109.47380 * 173.06827 * 3 2 1 7 7 H 1.08999 * 109.46826 * 65.61900 * 6 3 2 8 8 O 1.42898 * 109.47020 * 305.62478 * 6 3 2 9 9 C 1.42900 * 114.00327 * 150.40854 * 8 6 3 10 10 C 1.50694 * 109.47561 * 185.62085 * 6 3 2 11 11 O 1.21271 * 119.99707 * 97.08866 * 10 6 3 12 12 N 1.34774 * 120.00015 * 277.09108 * 10 6 3 13 13 C 1.37207 * 120.00210 * 3.18745 * 12 10 6 14 14 H 1.07991 * 120.00079 * 111.15739 * 13 12 10 15 15 C 1.38893 * 119.99962 * 291.15642 * 13 12 10 16 16 N 1.31412 * 119.99959 * 170.19365 * 15 13 12 17 17 Si 1.86803 * 120.00024 * 349.92341 * 15 13 12 18 18 H 1.48491 * 109.47427 * 96.01673 * 17 15 13 19 19 H 1.48500 * 109.46855 * 216.01903 * 17 15 13 20 20 H 1.48506 * 109.47055 * 336.01495 * 17 15 13 21 21 C 1.39427 * 119.99608 * 183.18632 * 12 10 6 22 22 C 1.39071 * 119.69436 * 184.72070 * 21 12 10 23 23 C 1.38386 * 119.09952 * 179.77279 * 22 21 12 24 24 C 1.38824 * 118.48614 * 0.49654 * 23 22 21 25 25 C 1.38147 * 119.31941 * 359.75013 * 24 23 22 26 26 N 1.31886 * 120.84760 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46850 * 300.00180 * 1 2 3 29 29 H 1.08996 * 109.47108 * 60.00017 * 1 2 3 30 30 H 1.09000 * 109.46850 * 239.99820 * 2 1 3 31 31 H 1.09005 * 109.46988 * 120.00180 * 2 1 3 32 32 H 1.09000 * 109.46879 * 186.81423 * 5 3 2 33 33 H 1.08999 * 109.46764 * 306.81536 * 5 3 2 34 34 H 1.09000 * 109.46802 * 66.81172 * 5 3 2 35 35 H 1.09002 * 109.47655 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47114 * 299.99998 * 9 8 6 37 37 H 1.08998 * 109.46948 * 59.99885 * 9 8 6 38 38 H 0.97000 * 119.99666 * 184.73403 * 16 15 13 39 39 H 1.08005 * 120.45173 * 0.02562 * 22 21 12 40 40 H 1.07993 * 120.75454 * 180.26948 * 23 22 21 41 41 H 1.08011 * 120.33967 * 179.72427 * 24 23 22 42 42 H 1.07997 * 119.57768 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5790 1.9909 0.8215 5 6 1.6771 2.1117 -1.3272 6 6 3.5601 1.4460 0.1741 7 1 4.0265 0.9854 -0.6967 8 8 3.9069 0.7071 1.3470 9 6 5.1883 0.0782 1.2800 10 6 4.0466 2.8656 0.3125 11 8 4.2458 3.3336 1.4134 12 7 4.2602 3.6150 -0.7871 13 6 3.9726 3.1081 -2.0293 14 1 3.1515 3.5140 -2.6013 15 6 4.7377 2.0729 -2.5510 16 7 4.3516 1.4581 -3.6464 17 14 6.3192 1.5595 -1.6998 18 1 6.0480 0.4056 -0.8053 19 1 7.3260 1.1695 -2.7194 20 1 6.8411 2.6954 -0.8980 21 6 4.7733 4.9054 -0.6624 22 6 4.8989 5.7088 -1.7905 23 6 5.4053 6.9892 -1.6519 24 6 5.7797 7.4197 -0.3863 25 6 5.6320 6.5661 0.6898 26 7 5.1412 5.3527 0.5281 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.1430 3.0958 -1.3771 33 1 2.0352 1.4977 -2.1535 34 1 0.5945 2.2183 -1.3962 35 1 5.3771 -0.4617 2.2080 36 1 5.2073 -0.6197 0.4430 37 1 5.9583 0.8366 1.1383 38 1 4.8480 0.6912 -3.9728 39 1 4.6015 5.3400 -2.7611 40 1 5.5103 7.6374 -2.5092 41 1 6.1826 8.4118 -0.2445 42 1 5.9223 6.8965 1.6761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892470120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:21 Heat of formation + Delta-G solvation = -29.687981 kcal Electronic energy + Delta-G solvation = -25420.337384 eV Core-core repulsion = 21980.468145 eV Total energy + Delta-G solvation = -3439.869239 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.06064 -40.43385 -38.53434 -37.31470 -36.31639 -34.23252 -33.17676 -31.80705 -30.52104 -28.79103 -27.31735 -26.74069 -25.33369 -24.21100 -23.49853 -21.43489 -20.90823 -19.90505 -18.65410 -18.08803 -17.46221 -17.00925 -16.61416 -16.44550 -16.16441 -16.01721 -15.56530 -15.23796 -15.17111 -14.67610 -14.49726 -14.25379 -14.09949 -13.80274 -13.64645 -13.58621 -13.18914 -13.04901 -12.64402 -12.61164 -12.42120 -12.22353 -12.01363 -11.73153 -11.41921 -11.38623 -11.20162 -11.11241 -10.76332 -10.59777 -10.53908 -9.74720 -8.88397 -8.51987 -6.51392 0.29087 0.55723 1.02236 1.17201 1.28298 1.77941 2.03004 2.17790 2.68802 2.79128 3.15496 3.60404 3.87639 3.98266 4.04871 4.11888 4.23348 4.26777 4.32097 4.36620 4.40658 4.44216 4.57815 4.60452 4.72535 4.74384 4.80810 4.98405 5.01753 5.15885 5.23182 5.25337 5.35818 5.38691 5.41853 5.58100 5.60714 5.72012 5.88850 5.92803 6.09393 6.29847 6.85447 6.93633 7.28323 7.74999 8.50913 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.007294 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.373047 B = 3837.641749 C = 4057.809307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.065 4.065 4 H 0.057 0.943 5 C -0.141 4.141 6 C 0.086 3.914 7 H 0.088 0.912 8 O -0.374 6.374 9 C 0.022 3.978 10 C 0.472 3.528 11 O -0.536 6.536 12 N -0.421 5.421 13 C -0.341 4.341 14 H 0.104 0.896 15 C 0.074 3.926 16 N -0.863 5.863 17 Si 0.855 3.145 18 H -0.222 1.222 19 H -0.272 1.272 20 H -0.298 1.298 21 C 0.319 3.681 22 C -0.202 4.202 23 C -0.055 4.055 24 C -0.208 4.208 25 C 0.098 3.902 26 N -0.536 5.536 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.119 0.881 36 H 0.057 0.943 37 H 0.012 0.988 38 H 0.285 0.715 39 H 0.140 0.860 40 H 0.170 0.830 41 H 0.170 0.830 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 1.294 1.777 2.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.084 4.084 4 H 0.075 0.925 5 C -0.198 4.198 6 C 0.025 3.975 7 H 0.105 0.895 8 O -0.292 6.292 9 C -0.074 4.074 10 C 0.261 3.739 11 O -0.412 6.412 12 N -0.139 5.139 13 C -0.468 4.468 14 H 0.121 0.879 15 C -0.135 4.135 16 N -0.497 5.497 17 Si 0.681 3.319 18 H -0.146 1.146 19 H -0.197 1.197 20 H -0.225 1.225 21 C 0.091 3.909 22 C -0.226 4.226 23 C -0.081 4.081 24 C -0.229 4.229 25 C -0.060 4.060 26 N -0.252 5.252 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.096 0.904 39 H 0.158 0.842 40 H 0.187 0.813 41 H 0.188 0.812 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.023 0.696 3.045 3.287 hybrid contribution 1.461 0.301 -0.684 1.641 sum 0.438 0.997 2.361 2.600 Atomic orbital electron populations 1.21741 0.93994 1.02354 1.01954 1.21464 0.97271 0.93985 1.01967 1.21029 0.89252 0.98930 0.99169 0.92469 1.22269 0.99836 1.02514 0.95151 1.22173 0.99059 0.87726 0.88521 0.89452 1.87857 1.35434 1.66805 1.39078 1.23252 0.84092 0.95974 1.04098 1.22270 0.77549 0.90021 0.84046 1.90612 1.50058 1.73683 1.26804 1.41780 1.54752 1.09935 1.07397 1.18705 1.15711 1.19587 0.92839 0.87881 1.25652 0.96958 0.96293 0.94580 1.69590 1.40112 1.19528 1.20512 0.87307 0.83647 0.80745 0.80240 1.14571 1.19706 1.22491 1.19890 0.92424 0.88458 0.90092 1.21805 1.06043 0.95677 0.99046 1.21815 0.93336 0.93894 0.99021 1.22306 1.05026 1.02677 0.92855 1.23109 0.94043 0.88102 1.00768 1.67645 1.14709 1.17862 1.24952 0.91189 0.92808 0.92332 0.92225 0.91595 0.91366 0.91888 0.92481 0.86295 0.92464 0.96897 0.90405 0.84243 0.81281 0.81223 0.81324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.70 71.98 0.70 -3.03 16 2 C -0.11 -3.52 5.29 30.59 0.16 -3.36 16 3 C -0.06 -2.53 2.13 -10.79 -0.02 -2.56 16 4 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 5 C -0.14 -5.55 7.07 71.98 0.51 -5.04 16 6 C 0.09 3.83 1.32 29.85 0.04 3.87 16 7 H 0.09 3.99 3.63 -2.39 -0.01 3.98 16 8 O -0.37 -15.94 8.96 -131.02 -1.17 -17.11 16 9 C 0.02 0.80 9.36 113.37 1.06 1.86 16 10 C 0.47 24.03 5.18 87.66 0.45 24.49 16 11 O -0.54 -30.26 14.93 14.96 0.22 -30.04 16 12 N -0.42 -21.00 1.52 -464.39 -0.71 -21.70 16 13 C -0.34 -16.51 3.74 84.01 0.31 -16.19 16 14 H 0.10 5.18 6.74 -2.92 -0.02 5.16 16 15 C 0.07 3.58 4.11 84.91 0.35 3.93 16 16 N -0.86 -42.01 13.95 21.65 0.30 -41.71 16 17 Si 0.86 39.41 24.09 68.60 1.65 41.06 16 18 H -0.22 -9.20 3.59 99.48 0.36 -8.84 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.30 -15.79 7.11 99.48 0.71 -15.08 16 21 C 0.32 15.38 7.28 132.91 0.97 16.35 16 22 C -0.20 -8.20 9.34 22.51 0.21 -7.99 16 23 C -0.05 -1.69 10.17 22.45 0.23 -1.46 16 24 C -0.21 -5.99 10.11 22.39 0.23 -5.77 16 25 C 0.10 3.56 11.18 84.66 0.95 4.50 16 26 N -0.54 -25.63 7.91 -192.95 -1.53 -27.16 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.50 6.79 -2.39 -0.02 1.49 16 30 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 31 H 0.07 2.11 7.32 -2.38 -0.02 2.09 16 32 H 0.07 3.03 4.00 -2.39 -0.01 3.02 16 33 H 0.06 2.65 7.51 -2.39 -0.02 2.63 16 34 H 0.06 1.93 6.96 -2.39 -0.02 1.92 16 35 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.06 1.92 6.87 -2.39 -0.02 1.91 16 37 H 0.01 0.51 6.74 -2.39 -0.02 0.49 16 38 H 0.28 13.06 8.32 -92.71 -0.77 12.29 16 39 H 0.14 5.67 7.00 -2.91 -0.02 5.65 16 40 H 0.17 3.68 8.06 -2.91 -0.02 3.65 16 41 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 42 H 0.17 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -65.06 321.88 5.59 -59.47 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.67 Total: 27.58 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.14 Total: 9.60 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -1.93 Total: -90.57 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -0.95 Total: -47.15 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.65 Total: 41.06 kcal Total: -65.06 5.59 -59.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.782 kcal (2) G-P(sol) polarization free energy of solvation -65.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds