Wall clock time and date at job start Tue Mar 31 2020 07:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21296 * 120.00486 * 2 1 4 4 C 1.46776 * 119.99868 * 180.02562 * 2 1 3 5 5 N 1.32184 * 126.49837 * 5.33470 * 4 2 1 6 6 N 1.28458 * 110.16654 * 180.28057 * 5 4 2 7 7 C 1.46498 * 124.88326 * 179.68665 * 6 5 4 8 8 C 1.53005 * 109.47011 * 95.02587 * 7 6 5 9 9 C 1.52994 * 109.47456 * 215.02565 * 7 6 5 10 10 C 1.35861 * 110.23215 * 359.71306 * 6 5 4 11 11 C 1.35728 * 107.14763 * 359.97438 * 10 6 5 12 12 O 1.36061 * 127.27317 * 179.97438 * 11 10 6 13 13 C 1.42892 * 117.00161 * 5.05985 * 12 11 10 14 14 C 1.52996 * 109.47294 * 183.92659 * 13 12 11 15 15 C 1.50699 * 115.54990 * 271.70234 * 14 13 12 16 16 H 1.08010 * 119.99635 * 114.81456 * 15 14 13 17 17 C 1.37874 * 120.00308 * 294.81240 * 15 14 13 18 18 N 1.31516 * 119.99999 * 355.79368 * 17 15 14 19 19 Si 1.86796 * 120.00269 * 175.79220 * 17 15 14 20 20 H 1.48500 * 109.47271 * 90.00073 * 19 17 15 21 21 H 1.48499 * 109.47236 * 209.99954 * 19 17 15 22 22 H 1.48497 * 109.47060 * 330.00183 * 19 17 15 23 23 C 1.53008 * 117.49907 * 125.99249 * 14 13 12 24 24 C 1.52999 * 59.99814 * 252.51065 * 23 14 13 25 25 H 1.08993 * 109.47633 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47241 * 300.00040 * 1 2 3 27 27 H 1.09000 * 109.47256 * 59.99646 * 1 2 3 28 28 H 1.09000 * 109.47620 * 335.02674 * 7 6 5 29 29 H 1.09003 * 109.46955 * 300.00312 * 8 7 6 30 30 H 1.09000 * 109.46858 * 59.99619 * 8 7 6 31 31 H 1.08996 * 109.47179 * 179.97438 * 8 7 6 32 32 H 1.09001 * 109.47435 * 59.99873 * 9 7 6 33 33 H 1.08996 * 109.47554 * 180.02562 * 9 7 6 34 34 H 1.09009 * 109.47247 * 300.00238 * 9 7 6 35 35 H 1.08005 * 126.43053 * 180.02562 * 10 6 5 36 36 H 1.08998 * 109.47292 * 63.92537 * 13 12 11 37 37 H 1.09007 * 109.47195 * 303.92693 * 13 12 11 38 38 H 0.97001 * 120.00427 * 185.03286 * 18 17 15 39 39 H 1.09001 * 117.49841 * 0.02562 * 23 14 13 40 40 H 1.09004 * 117.49524 * 145.01902 * 23 14 13 41 41 H 1.08995 * 117.50103 * 252.50816 * 24 23 14 42 42 H 1.09006 * 117.51435 * 107.48162 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2408 -1.2711 -0.0006 5 7 1.7176 -2.4810 -0.0999 6 7 2.6450 -3.3690 -0.0608 7 6 2.4240 -4.8152 -0.1384 8 6 2.5883 -5.2792 -1.5872 9 6 3.4435 -5.5352 0.7464 10 6 3.8602 -2.7743 0.0634 11 6 3.6478 -1.4342 0.1011 12 8 4.5846 -0.4545 0.2188 13 6 5.9543 -0.8612 0.2023 14 6 6.8505 0.3552 0.4428 15 6 7.2499 1.1225 -0.7912 16 1 6.9100 2.1385 -0.9289 17 6 8.0489 0.5277 -1.7444 18 7 8.5307 -0.6787 -1.5389 19 14 8.4474 1.4351 -3.3278 20 1 9.6872 2.2315 -3.1434 21 1 8.6480 0.4536 -4.4239 22 1 7.3237 2.3419 -3.6748 23 6 7.8687 0.2685 1.5817 24 6 6.6288 1.1527 1.7296 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.4161 -5.0477 0.2054 29 1 1.8619 -4.7662 -2.2176 30 1 3.5961 -5.0466 -1.9310 31 1 2.4243 -6.3552 -1.6449 32 1 3.3265 -5.2047 1.7785 33 1 3.2793 -6.6111 0.6883 34 1 4.4514 -5.3027 0.4025 35 1 4.8160 -3.2740 0.1205 36 1 6.1911 -1.3011 -0.7665 37 1 6.1240 -1.5984 0.9872 38 1 9.1511 -1.0681 -2.1748 39 1 7.9002 -0.6553 2.1593 40 1 8.8277 0.7664 1.4383 41 1 6.7720 2.2322 1.6837 42 1 5.8441 0.8108 2.4046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902627121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:54 Heat of formation + Delta-G solvation = 27.014279 kcal Electronic energy + Delta-G solvation = -23798.169509 eV Core-core repulsion = 20360.759064 eV Total energy + Delta-G solvation = -3437.410445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.37851 -38.60817 -37.94705 -36.03501 -35.42983 -32.00646 -31.05246 -29.78010 -29.00805 -27.56820 -26.56382 -25.22230 -23.90104 -21.78676 -21.06074 -20.24773 -19.45770 -18.67391 -17.65468 -16.29477 -16.07089 -15.74376 -15.41018 -14.81416 -14.67774 -14.55399 -14.30925 -14.24276 -13.91963 -13.49762 -13.02187 -12.85315 -12.67507 -12.50329 -12.17286 -11.90652 -11.78694 -11.62417 -11.44769 -11.33689 -10.95281 -10.86404 -10.74496 -10.50165 -10.31190 -10.19895 -9.52101 -9.46543 -8.97203 -8.83732 -8.52828 -8.16692 -7.66817 -6.05828 -4.08842 1.52176 2.42121 2.49379 3.30613 3.37056 3.44360 3.48146 3.91792 4.26106 4.41517 4.42925 4.56489 4.73274 5.01261 5.09455 5.18229 5.19785 5.34725 5.40132 5.43569 5.51104 5.51543 5.58500 5.66339 5.77758 5.85620 5.88961 6.03154 6.23615 6.26157 6.37217 6.41439 6.69053 6.77828 6.82177 6.94949 7.04682 7.41606 7.47048 7.83668 7.89641 8.14569 8.32737 8.42940 8.91605 9.55100 11.03083 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.005131 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.163650 B = 5455.979168 C = 6157.557951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.434 3.566 3 O -0.437 6.437 4 C -0.076 4.076 5 N -0.233 5.233 6 N -0.262 5.262 7 C 0.148 3.852 8 C -0.167 4.167 9 C -0.166 4.166 10 C -0.121 4.121 11 C 0.087 3.913 12 O -0.270 6.270 13 C 0.107 3.893 14 C 0.046 3.954 15 C -0.482 4.482 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.888 5.888 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.167 4.167 24 C -0.194 4.194 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.178 0.822 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 -11.824 3.341 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.308 3.692 3 O -0.306 6.306 4 C -0.231 4.231 5 N -0.074 5.074 6 N -0.058 5.058 7 C 0.047 3.953 8 C -0.225 4.225 9 C -0.224 4.224 10 C -0.262 4.262 11 C 0.031 3.969 12 O -0.180 6.180 13 C 0.032 3.968 14 C 0.046 3.954 15 C -0.520 4.520 16 H 0.081 0.919 17 C -0.135 4.135 18 N -0.526 5.526 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.205 4.205 24 C -0.231 4.231 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.196 0.804 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.647 -11.803 3.125 18.312 hybrid contribution 1.355 0.288 -0.814 1.606 sum -12.293 -11.514 2.312 17.001 Atomic orbital electron populations 1.22091 0.93487 1.04735 1.04157 1.21163 0.90767 0.85384 0.71919 1.90652 1.71937 1.32582 1.35458 1.22073 0.90785 0.93492 1.16789 1.73451 1.19063 0.96859 1.18044 1.45266 1.03494 1.06468 1.50542 1.21513 1.02068 0.73756 0.97932 1.22247 1.03821 1.02084 0.94335 1.22195 0.99370 1.00847 0.99954 1.22493 0.91649 0.92907 1.19143 1.19198 0.90145 0.87711 0.99839 1.86316 1.15754 1.29227 1.86709 1.22626 0.76127 0.97440 1.00597 1.18713 0.94414 0.93430 0.88867 1.20533 1.30614 0.98993 1.01841 0.91856 1.24982 0.95697 0.94760 0.98037 1.69942 1.30899 1.14884 1.36873 0.86571 0.78812 0.79592 0.83073 1.20572 1.21184 1.19575 1.22773 0.94090 0.99512 1.04076 1.22777 0.99483 0.97573 1.03248 0.89710 0.89277 0.89243 0.87457 0.91411 0.91275 0.90198 0.91261 0.89824 0.90926 0.80442 0.90604 0.95451 0.92971 0.91815 0.89801 0.90248 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 10.32 36.00 0.37 -1.89 16 2 C 0.43 7.69 7.24 -30.86 -0.22 7.47 16 3 O -0.44 -9.58 17.28 3.40 0.06 -9.52 16 4 C -0.08 -1.41 7.05 -82.82 -0.58 -1.99 16 5 N -0.23 -3.67 11.37 33.37 0.38 -3.29 16 6 N -0.26 -3.71 3.24 -54.52 -0.18 -3.89 16 7 C 0.15 1.38 3.80 -67.93 -0.26 1.12 16 8 C -0.17 -1.39 9.52 37.16 0.35 -1.04 16 9 C -0.17 -1.27 8.81 37.15 0.33 -0.94 16 10 C -0.12 -2.04 9.63 -16.67 -0.16 -2.20 16 11 C 0.09 1.78 7.04 -39.04 -0.27 1.50 16 12 O -0.27 -6.53 9.62 -22.07 -0.21 -6.74 16 13 C 0.11 2.57 5.10 37.16 0.19 2.76 16 14 C 0.05 1.20 1.59 -155.66 -0.25 0.95 16 15 C -0.48 -13.72 8.82 -34.44 -0.30 -14.02 16 16 H 0.06 1.84 7.82 -52.48 -0.41 1.43 16 17 C 0.07 1.87 5.25 -17.82 -0.09 1.78 16 18 N -0.89 -24.92 12.47 55.43 0.69 -24.23 16 19 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 23 C -0.17 -3.93 9.88 -26.73 -0.26 -4.19 16 24 C -0.19 -4.53 9.81 -26.73 -0.26 -4.79 16 25 H 0.08 0.91 7.49 -51.93 -0.39 0.53 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.62 7.06 -51.92 -0.37 0.25 16 35 H 0.18 2.72 6.73 -52.48 -0.35 2.36 16 36 H 0.08 1.97 7.17 -51.93 -0.37 1.60 16 37 H 0.03 0.60 7.54 -51.92 -0.39 0.21 16 38 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 39 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 40 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 41 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 42 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -33.08 358.42 -6.80 -39.88 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.49 Total: 1.23 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -1.43 Total: -15.47 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.89 Total: -31.41 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.15 Total: -16.26 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.08 -6.80 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902627121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.894 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds