Wall clock time and date at job start Tue Mar 31 2020 07:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21296 * 120.00486 * 2 1 4 4 C 1.46776 * 119.99868 * 180.02562 * 2 1 3 5 5 N 1.32184 * 126.49837 * 5.33470 * 4 2 1 6 6 N 1.28458 * 110.16654 * 180.28057 * 5 4 2 7 7 C 1.46498 * 124.88326 * 179.68665 * 6 5 4 8 8 C 1.53005 * 109.47011 * 95.02587 * 7 6 5 9 9 C 1.52994 * 109.47456 * 215.02565 * 7 6 5 10 10 C 1.35861 * 110.23215 * 359.71306 * 6 5 4 11 11 C 1.35728 * 107.14763 * 359.97438 * 10 6 5 12 12 O 1.36061 * 127.27317 * 179.97438 * 11 10 6 13 13 C 1.42892 * 117.00161 * 5.05985 * 12 11 10 14 14 C 1.52996 * 109.47294 * 183.92659 * 13 12 11 15 15 C 1.50699 * 115.54990 * 271.70234 * 14 13 12 16 16 H 1.08010 * 119.99635 * 114.81456 * 15 14 13 17 17 C 1.37874 * 120.00308 * 294.81240 * 15 14 13 18 18 N 1.31516 * 119.99999 * 355.79368 * 17 15 14 19 19 Si 1.86796 * 120.00269 * 175.79220 * 17 15 14 20 20 H 1.48500 * 109.47271 * 90.00073 * 19 17 15 21 21 H 1.48499 * 109.47236 * 209.99954 * 19 17 15 22 22 H 1.48497 * 109.47060 * 330.00183 * 19 17 15 23 23 C 1.53008 * 117.49907 * 125.99249 * 14 13 12 24 24 C 1.52999 * 59.99814 * 252.51065 * 23 14 13 25 25 H 1.08993 * 109.47633 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47241 * 300.00040 * 1 2 3 27 27 H 1.09000 * 109.47256 * 59.99646 * 1 2 3 28 28 H 1.09000 * 109.47620 * 335.02674 * 7 6 5 29 29 H 1.09003 * 109.46955 * 300.00312 * 8 7 6 30 30 H 1.09000 * 109.46858 * 59.99619 * 8 7 6 31 31 H 1.08996 * 109.47179 * 179.97438 * 8 7 6 32 32 H 1.09001 * 109.47435 * 59.99873 * 9 7 6 33 33 H 1.08996 * 109.47554 * 180.02562 * 9 7 6 34 34 H 1.09009 * 109.47247 * 300.00238 * 9 7 6 35 35 H 1.08005 * 126.43053 * 180.02562 * 10 6 5 36 36 H 1.08998 * 109.47292 * 63.92537 * 13 12 11 37 37 H 1.09007 * 109.47195 * 303.92693 * 13 12 11 38 38 H 0.97001 * 120.00427 * 185.03286 * 18 17 15 39 39 H 1.09001 * 117.49841 * 0.02562 * 23 14 13 40 40 H 1.09004 * 117.49524 * 145.01902 * 23 14 13 41 41 H 1.08995 * 117.50103 * 252.50816 * 24 23 14 42 42 H 1.09006 * 117.51435 * 107.48162 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2408 -1.2711 -0.0006 5 7 1.7176 -2.4810 -0.0999 6 7 2.6450 -3.3690 -0.0608 7 6 2.4240 -4.8152 -0.1384 8 6 2.5883 -5.2792 -1.5872 9 6 3.4435 -5.5352 0.7464 10 6 3.8602 -2.7743 0.0634 11 6 3.6478 -1.4342 0.1011 12 8 4.5846 -0.4545 0.2188 13 6 5.9543 -0.8612 0.2023 14 6 6.8505 0.3552 0.4428 15 6 7.2499 1.1225 -0.7912 16 1 6.9100 2.1385 -0.9289 17 6 8.0489 0.5277 -1.7444 18 7 8.5307 -0.6787 -1.5389 19 14 8.4474 1.4351 -3.3278 20 1 9.6872 2.2315 -3.1434 21 1 8.6480 0.4536 -4.4239 22 1 7.3237 2.3419 -3.6748 23 6 7.8687 0.2685 1.5817 24 6 6.6288 1.1527 1.7296 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.4161 -5.0477 0.2054 29 1 1.8619 -4.7662 -2.2176 30 1 3.5961 -5.0466 -1.9310 31 1 2.4243 -6.3552 -1.6449 32 1 3.3265 -5.2047 1.7785 33 1 3.2793 -6.6111 0.6883 34 1 4.4514 -5.3027 0.4025 35 1 4.8160 -3.2740 0.1205 36 1 6.1911 -1.3011 -0.7665 37 1 6.1240 -1.5984 0.9872 38 1 9.1511 -1.0681 -2.1748 39 1 7.9002 -0.6553 2.1593 40 1 8.8277 0.7664 1.4383 41 1 6.7720 2.2322 1.6837 42 1 5.8441 0.8108 2.4046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902627121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:54 Heat of formation + Delta-G solvation = 7.000807 kcal Electronic energy + Delta-G solvation = -23799.037358 eV Core-core repulsion = 20360.759064 eV Total energy + Delta-G solvation = -3438.278294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.67967 -40.03943 -39.68077 -37.68924 -36.53982 -34.12653 -32.24653 -31.16545 -30.12134 -28.44713 -28.19807 -27.25683 -25.07113 -23.21593 -22.78963 -21.58935 -21.03093 -20.26606 -18.95135 -18.22864 -17.41091 -17.19638 -16.77378 -16.58191 -16.14076 -15.98361 -15.73037 -15.66219 -15.13941 -15.07001 -14.63564 -13.87233 -13.79161 -13.44002 -13.25245 -13.14116 -13.03763 -12.97680 -12.89407 -12.71624 -12.45917 -12.37947 -12.33729 -12.11678 -12.05322 -11.97714 -11.45339 -10.88623 -10.84728 -10.56345 -10.24350 -10.14253 -9.19415 -8.17630 -6.26994 0.18917 1.03153 1.36359 1.38339 1.38996 1.49376 2.07880 2.37346 2.39380 3.06233 3.08625 3.42371 3.56953 3.81781 3.84040 3.96097 4.06765 4.11124 4.26438 4.38767 4.42382 4.49174 4.62384 4.66108 4.68138 4.68767 4.77344 4.79580 4.83158 4.87125 4.92784 5.03396 5.13900 5.17606 5.20122 5.22600 5.49505 5.53690 5.73622 5.75852 6.33960 6.51822 6.61802 6.74041 6.88538 7.38870 8.90643 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.005131 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.163650 B = 5455.979168 C = 6157.557951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.429 3.571 3 O -0.494 6.494 4 C -0.103 4.103 5 N -0.212 5.212 6 N -0.246 5.246 7 C 0.135 3.865 8 C -0.163 4.163 9 C -0.163 4.163 10 C -0.105 4.105 11 C 0.034 3.966 12 O -0.300 6.300 13 C 0.126 3.874 14 C 0.010 3.990 15 C -0.510 4.510 16 H 0.043 0.957 17 C 0.030 3.970 18 N -0.904 5.904 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.279 1.279 23 C -0.153 4.153 24 C -0.182 4.182 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.133 0.867 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.061 0.939 35 H 0.191 0.809 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.388 -14.209 3.393 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.307 3.693 3 O -0.368 6.368 4 C -0.256 4.256 5 N -0.054 5.054 6 N -0.042 5.042 7 C 0.037 3.963 8 C -0.221 4.221 9 C -0.221 4.221 10 C -0.246 4.246 11 C -0.021 4.021 12 O -0.211 6.211 13 C 0.051 3.949 14 C 0.009 3.991 15 C -0.548 4.548 16 H 0.061 0.939 17 C -0.171 4.171 18 N -0.541 5.541 19 Si 0.773 3.227 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.204 1.204 23 C -0.190 4.190 24 C -0.219 4.219 25 H 0.119 0.881 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.150 0.850 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.207 0.793 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.001 -14.230 3.184 20.920 hybrid contribution 1.685 0.859 -0.830 2.066 sum -13.315 -13.371 2.354 19.016 Atomic orbital electron populations 1.22084 0.88755 1.06365 1.05843 1.22060 0.93208 0.84276 0.69724 1.90626 1.73506 1.34173 1.38486 1.22372 0.90320 0.94860 1.18078 1.73446 1.18784 0.96123 1.17046 1.45958 1.02331 1.08122 1.47790 1.22132 1.04123 0.70732 0.99296 1.22260 1.02527 1.04266 0.93053 1.22236 0.98148 1.02690 0.99011 1.22610 0.93067 0.91876 1.17079 1.19679 0.90555 0.88717 1.03146 1.86236 1.15875 1.31175 1.87851 1.22212 0.76584 0.96663 0.99446 1.18883 0.96351 0.94874 0.88970 1.20697 1.31547 0.98679 1.03836 0.93911 1.25586 0.95451 0.95597 1.00429 1.70004 1.30949 1.15502 1.37691 0.85708 0.78524 0.78634 0.79814 1.19400 1.20175 1.20424 1.22722 0.93322 1.00181 1.02821 1.22748 0.99740 0.97378 1.02042 0.88074 0.87259 0.87524 0.84966 0.92396 0.92859 0.86590 0.91765 0.86399 0.91957 0.79251 0.93434 0.93786 0.92634 0.89700 0.90748 0.90494 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 10.32 71.23 0.73 -3.15 16 2 C 0.43 15.45 7.24 27.92 0.20 15.65 16 3 O -0.49 -22.69 17.28 -1.03 -0.02 -22.71 16 4 C -0.10 -3.82 7.05 42.26 0.30 -3.53 16 5 N -0.21 -6.36 11.37 -48.35 -0.55 -6.90 16 6 N -0.25 -6.56 3.24 -326.41 -1.06 -7.62 16 7 C 0.14 2.11 3.80 44.99 0.17 2.28 16 8 C -0.16 -2.25 9.52 71.98 0.69 -1.57 16 9 C -0.16 -1.98 8.81 71.98 0.63 -1.35 16 10 C -0.10 -3.48 9.63 83.49 0.80 -2.68 16 11 C 0.03 1.41 7.04 22.62 0.16 1.57 16 12 O -0.30 -15.14 9.62 -92.20 -0.89 -16.02 16 13 C 0.13 6.25 5.10 71.98 0.37 6.62 16 14 C 0.01 0.51 1.59 -52.93 -0.08 0.43 16 15 C -0.51 -30.02 8.82 25.60 0.23 -29.80 16 16 H 0.04 2.60 7.82 -2.91 -0.02 2.58 16 17 C 0.03 1.69 5.25 84.65 0.44 2.14 16 18 N -0.90 -51.22 12.47 21.45 0.27 -50.95 16 19 Si 0.95 45.09 29.54 68.60 2.03 47.12 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 23 C -0.15 -7.22 9.88 30.60 0.30 -6.92 16 24 C -0.18 -8.64 9.81 30.59 0.30 -8.34 16 25 H 0.10 1.91 7.49 -2.39 -0.02 1.90 16 26 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.91 7.06 -2.38 -0.02 0.89 16 35 H 0.19 5.73 6.73 -2.91 -0.02 5.71 16 36 H 0.05 2.57 7.17 -2.39 -0.02 2.56 16 37 H 0.04 1.96 7.54 -2.38 -0.02 1.94 16 38 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 39 H 0.08 3.60 8.04 -2.39 -0.02 3.58 16 40 H 0.07 3.61 8.14 -2.38 -0.02 3.59 16 41 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 42 H 0.08 3.65 8.14 -2.38 -0.02 3.63 16 Total: -1.00 -75.02 358.42 6.03 -68.99 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.00 Total: 16.73 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 5.24 Total: -28.64 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -1.34 Total: -65.47 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.91 Total: -38.73 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -75.02 6.03 -68.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902627121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.994 kcal (2) G-P(sol) polarization free energy of solvation -75.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds