Wall clock time and date at job start Tue Mar 31 2020 06:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 H 1.09007 * 109.46989 * 55.00174 * 3 2 1 5 5 C 1.50698 * 109.47174 * 174.99785 * 3 2 1 6 6 H 1.08006 * 120.00027 * 120.00495 * 5 3 2 7 7 C 1.37877 * 120.00381 * 300.00305 * 5 3 2 8 8 N 1.31515 * 120.00360 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99763 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47042 * 89.99831 * 9 7 5 11 11 H 1.48503 * 109.47239 * 209.99911 * 9 7 5 12 12 H 1.48495 * 109.47059 * 329.99935 * 9 7 5 13 13 N 1.46496 * 109.47404 * 295.00238 * 3 2 1 14 14 C 1.34771 * 120.00020 * 84.99764 * 13 3 2 15 15 O 1.21588 * 120.00368 * 0.02562 * 14 13 3 16 16 C 1.47525 * 120.00028 * 179.97438 * 14 13 3 17 17 C 1.39993 * 120.59803 * 0.02562 * 16 14 13 18 18 C 1.38336 * 118.34846 * 180.27287 * 17 16 14 19 19 C 1.38353 * 119.45920 * 359.49633 * 18 17 16 20 20 C 1.50703 * 119.40754 * 180.25214 * 19 18 17 21 21 C 1.53000 * 109.47273 * 275.25668 * 20 19 18 22 22 C 1.53002 * 109.46874 * 35.25656 * 20 19 18 23 23 N 1.31877 * 121.18723 * 0.51959 * 19 18 17 24 24 C 1.32239 * 121.79752 * 359.73448 * 23 19 18 25 25 O 1.35426 * 119.79867 * 180.02562 * 24 23 19 26 26 H 1.09005 * 109.47195 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47013 * 299.99577 * 1 2 3 28 28 H 1.09001 * 109.47183 * 59.99635 * 1 2 3 29 29 H 1.09005 * 109.47121 * 239.99891 * 2 1 3 30 30 H 1.09001 * 109.47183 * 120.00365 * 2 1 3 31 31 H 0.96996 * 120.00090 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00050 * 264.99407 * 13 3 2 33 33 H 1.08002 * 120.82032 * 359.97438 * 17 16 14 34 34 H 1.08006 * 120.26409 * 179.74482 * 18 17 16 35 35 H 1.09003 * 109.47222 * 155.25335 * 20 19 18 36 36 H 1.09001 * 109.46984 * 60.00409 * 21 20 19 37 37 H 1.09004 * 109.46770 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47148 * 299.99822 * 21 20 19 39 39 H 1.09008 * 109.47052 * 60.00017 * 22 20 19 40 40 H 1.08995 * 109.47134 * 179.97438 * 22 20 19 41 41 H 1.08999 * 109.47312 * 300.00171 * 22 20 19 42 42 H 0.96708 * 114.00145 * 269.97880 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7941 0.2357 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3668 15 8 -0.3412 2.6326 -0.4316 16 6 0.0451 3.3245 -2.6272 17 6 0.9293 3.3690 -3.7116 18 6 0.5177 4.0049 -4.8691 19 6 -0.7467 4.5639 -4.9256 20 6 -1.1960 5.2514 -6.1891 21 6 -0.7038 6.7000 -6.1843 22 6 -0.6164 4.5198 -7.4015 23 7 -1.5637 4.5105 -3.8918 24 6 -1.2183 3.9194 -2.7604 25 8 -2.0897 3.8878 -1.7242 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8770 0.4815 2.1128 32 1 2.2720 2.1232 -1.9977 33 1 1.9103 2.9221 -3.6445 34 1 1.1765 4.0610 -5.7232 35 1 -2.2847 5.2377 -6.2428 36 1 0.3848 6.7137 -6.1307 37 1 -1.0285 7.1971 -7.0984 38 1 -1.1167 7.2212 -5.3206 39 1 -0.9671 3.4877 -7.4050 40 1 -0.9418 5.0168 -8.3154 41 1 0.4722 4.5335 -7.3479 42 1 -2.0147 4.6424 -1.1241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:18 Heat of formation + Delta-G solvation = -48.263704 kcal Electronic energy + Delta-G solvation = -23676.861513 eV Core-core repulsion = 20236.186770 eV Total energy + Delta-G solvation = -3440.674743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.88352 -38.94765 -37.44558 -35.28969 -35.20614 -33.01438 -32.21880 -31.32698 -29.64915 -27.50981 -27.47065 -24.90548 -23.34930 -22.66906 -21.52952 -20.66253 -19.63609 -18.42882 -17.81847 -17.02203 -16.40415 -15.82824 -15.59112 -14.98888 -14.69583 -14.57706 -14.41395 -13.98670 -13.67051 -13.32256 -13.13330 -12.79464 -12.72907 -12.39026 -12.26207 -11.92679 -11.81299 -11.75484 -11.58003 -11.43216 -11.14027 -11.10345 -10.91649 -10.64526 -9.98202 -9.92327 -9.78985 -9.53395 -9.25604 -9.08417 -8.85313 -8.77796 -8.09735 -6.24429 -4.27354 0.61441 1.05705 3.09880 3.22075 3.33972 3.39054 3.45555 3.80165 3.94025 4.27894 4.29138 4.49895 4.77414 4.80210 4.88881 4.93453 5.09433 5.13016 5.29923 5.38479 5.43175 5.51151 5.59008 5.68523 5.77990 5.93853 5.94661 5.97329 6.02957 6.04974 6.18418 6.34607 6.65377 6.69715 6.82854 6.96619 7.21976 7.26626 7.47076 7.56896 7.82249 8.10330 8.46252 8.71367 8.86748 9.36231 10.87481 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.003884 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.678530 B = 7206.882550 C = 7775.901698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.244 3.756 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.695 5.695 14 C 0.549 3.451 15 O -0.528 6.528 16 C -0.198 4.198 17 C -0.028 4.028 18 C -0.190 4.190 19 C 0.174 3.826 20 C -0.049 4.049 21 C -0.141 4.141 22 C -0.148 4.148 23 N -0.510 5.510 24 C 0.368 3.632 25 O -0.459 6.459 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.392 0.608 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.048 8.117 -15.496 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.141 3.859 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.344 5.344 14 C 0.333 3.667 15 O -0.406 6.406 16 C -0.205 4.205 17 C -0.054 4.054 18 C -0.210 4.210 19 C 0.035 3.965 20 C -0.068 4.068 21 C -0.199 4.199 22 C -0.206 4.206 23 N -0.229 5.229 24 C 0.188 3.812 25 O -0.266 6.266 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -11.443 7.862 -14.891 20.359 hybrid contribution 0.896 -0.553 0.731 1.282 sum -10.546 7.309 -14.160 19.109 Atomic orbital electron populations 1.21876 0.96786 0.99103 1.02372 1.22291 0.94459 0.99842 1.01124 1.19176 0.95654 0.88541 0.82564 0.93137 1.21031 0.88529 1.39976 1.07929 0.90222 1.24824 0.94871 0.95070 0.97664 1.69862 1.08691 1.44421 1.29839 0.86904 0.80984 0.80014 0.80866 1.20197 1.22142 1.18394 1.46102 1.14455 1.55740 1.18065 1.17761 0.82889 0.79523 0.86495 1.90780 1.51074 1.59319 1.39436 1.21425 0.95336 1.06432 0.97309 1.21835 0.98972 0.93467 0.91175 1.21897 0.97923 1.01669 0.99488 1.21112 0.89557 0.92753 0.93071 1.20128 1.01906 0.94928 0.89885 1.21806 1.01517 0.94225 1.02360 1.21944 1.01403 1.00563 0.96684 1.67062 1.36389 1.18953 1.00465 1.19131 0.85050 0.90072 0.86968 1.84713 1.57257 1.48991 1.35634 0.94965 0.92786 0.92912 0.92318 0.92711 0.92239 0.77385 0.83659 0.83840 0.89048 0.92253 0.91740 0.92223 0.92198 0.91697 0.91866 0.73716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.21 16 3 C 0.24 5.69 1.83 -69.09 -0.13 5.57 16 4 H 0.05 1.30 6.63 -51.92 -0.34 0.96 16 5 C -0.54 -14.22 9.31 -34.44 -0.32 -14.54 16 6 H 0.08 2.21 7.98 -52.48 -0.42 1.79 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.05 13.96 55.43 0.77 -25.27 16 9 Si 0.88 21.56 24.41 -169.99 -4.15 17.41 16 10 H -0.28 -6.53 6.83 56.52 0.39 -6.15 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 13 N -0.69 -13.56 4.98 -55.98 -0.28 -13.83 16 14 C 0.55 10.43 6.34 -12.48 -0.08 10.35 16 15 O -0.53 -11.43 12.33 -16.48 -0.20 -11.63 16 16 C -0.20 -3.11 5.90 -104.69 -0.62 -3.73 16 17 C -0.03 -0.35 9.64 -38.89 -0.37 -0.73 16 18 C -0.19 -2.00 9.15 -39.50 -0.36 -2.36 16 19 C 0.17 2.00 5.79 -82.53 -0.48 1.52 16 20 C -0.05 -0.42 3.22 -91.77 -0.30 -0.71 16 21 C -0.14 -1.02 9.18 37.16 0.34 -0.68 16 22 C -0.15 -0.96 8.62 37.16 0.32 -0.64 16 23 N -0.51 -7.27 10.28 -9.21 -0.09 -7.37 16 24 C 0.37 5.76 7.77 -16.61 -0.13 5.63 16 25 O -0.46 -7.25 11.66 -39.74 -0.46 -7.72 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 28 H 0.05 1.09 5.65 -51.93 -0.29 0.80 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 1.28 3.22 -51.93 -0.17 1.11 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 32 H 0.39 6.66 6.64 -40.82 -0.27 6.39 16 33 H 0.15 1.53 6.52 -52.49 -0.34 1.19 16 34 H 0.14 1.08 6.29 -52.48 -0.33 0.75 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.36 6.47 -51.93 -0.34 0.02 16 42 H 0.40 4.76 9.06 45.56 0.41 5.17 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -32.58 333.64 -6.49 -39.07 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.06 Total: 8.39 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.04 Total: -4.07 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.40 Total: -46.47 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.67 Total: -19.35 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.15 Total: 17.41 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.58 -6.49 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.191 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds