Wall clock time and date at job start Tue Mar 31 2020 06:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 H 1.09007 * 109.46989 * 55.00174 * 3 2 1 5 5 C 1.50698 * 109.47174 * 174.99785 * 3 2 1 6 6 H 1.08006 * 120.00027 * 120.00495 * 5 3 2 7 7 C 1.37877 * 120.00381 * 300.00305 * 5 3 2 8 8 N 1.31515 * 120.00360 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99763 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47042 * 89.99831 * 9 7 5 11 11 H 1.48503 * 109.47239 * 209.99911 * 9 7 5 12 12 H 1.48495 * 109.47059 * 329.99935 * 9 7 5 13 13 N 1.46496 * 109.47404 * 295.00238 * 3 2 1 14 14 C 1.34771 * 120.00020 * 84.99764 * 13 3 2 15 15 O 1.21588 * 120.00368 * 0.02562 * 14 13 3 16 16 C 1.47525 * 120.00028 * 179.97438 * 14 13 3 17 17 C 1.39993 * 120.59803 * 0.02562 * 16 14 13 18 18 C 1.38336 * 118.34846 * 180.27287 * 17 16 14 19 19 C 1.38353 * 119.45920 * 359.49633 * 18 17 16 20 20 C 1.50703 * 119.40754 * 180.25214 * 19 18 17 21 21 C 1.53000 * 109.47273 * 275.25668 * 20 19 18 22 22 C 1.53002 * 109.46874 * 35.25656 * 20 19 18 23 23 N 1.31877 * 121.18723 * 0.51959 * 19 18 17 24 24 C 1.32239 * 121.79752 * 359.73448 * 23 19 18 25 25 O 1.35426 * 119.79867 * 180.02562 * 24 23 19 26 26 H 1.09005 * 109.47195 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47013 * 299.99577 * 1 2 3 28 28 H 1.09001 * 109.47183 * 59.99635 * 1 2 3 29 29 H 1.09005 * 109.47121 * 239.99891 * 2 1 3 30 30 H 1.09001 * 109.47183 * 120.00365 * 2 1 3 31 31 H 0.96996 * 120.00090 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00050 * 264.99407 * 13 3 2 33 33 H 1.08002 * 120.82032 * 359.97438 * 17 16 14 34 34 H 1.08006 * 120.26409 * 179.74482 * 18 17 16 35 35 H 1.09003 * 109.47222 * 155.25335 * 20 19 18 36 36 H 1.09001 * 109.46984 * 60.00409 * 21 20 19 37 37 H 1.09004 * 109.46770 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47148 * 299.99822 * 21 20 19 39 39 H 1.09008 * 109.47052 * 60.00017 * 22 20 19 40 40 H 1.08995 * 109.47134 * 179.97438 * 22 20 19 41 41 H 1.08999 * 109.47312 * 300.00171 * 22 20 19 42 42 H 0.96708 * 114.00145 * 269.97880 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7941 0.2357 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3668 15 8 -0.3412 2.6326 -0.4316 16 6 0.0451 3.3245 -2.6272 17 6 0.9293 3.3690 -3.7116 18 6 0.5177 4.0049 -4.8691 19 6 -0.7467 4.5639 -4.9256 20 6 -1.1960 5.2514 -6.1891 21 6 -0.7038 6.7000 -6.1843 22 6 -0.6164 4.5198 -7.4015 23 7 -1.5637 4.5105 -3.8918 24 6 -1.2183 3.9194 -2.7604 25 8 -2.0897 3.8878 -1.7242 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8770 0.4815 2.1128 32 1 2.2720 2.1232 -1.9977 33 1 1.9103 2.9221 -3.6445 34 1 1.1765 4.0610 -5.7232 35 1 -2.2847 5.2377 -6.2428 36 1 0.3848 6.7137 -6.1307 37 1 -1.0285 7.1971 -7.0984 38 1 -1.1167 7.2212 -5.3206 39 1 -0.9671 3.4877 -7.4050 40 1 -0.9418 5.0168 -8.3154 41 1 0.4722 4.5335 -7.3479 42 1 -2.0147 4.6424 -1.1241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:17 Heat of formation + Delta-G solvation = -73.182920 kcal Electronic energy + Delta-G solvation = -23677.942091 eV Core-core repulsion = 20236.186770 eV Total energy + Delta-G solvation = -3441.755321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.99398 -40.38650 -38.53921 -37.01735 -36.06105 -34.49675 -33.95392 -32.80203 -30.72700 -29.35771 -27.99150 -26.00081 -24.67450 -24.22203 -22.86582 -21.81283 -21.17853 -19.73769 -19.20002 -18.18337 -18.03202 -17.26855 -16.95695 -16.33798 -16.08803 -15.88246 -15.39608 -15.23270 -14.97809 -14.65835 -14.31644 -14.03976 -13.93221 -13.73405 -13.66199 -13.40631 -12.98424 -12.83927 -12.78180 -12.77227 -12.42926 -12.35411 -12.03586 -11.87491 -11.79054 -11.40971 -11.25875 -10.99865 -10.97160 -10.86462 -10.38662 -9.95880 -9.71800 -8.38616 -6.44030 -0.46465 0.06593 1.27019 1.35442 1.44985 1.88059 2.25364 2.27048 2.48693 2.74658 2.97505 3.39291 3.64206 3.74794 3.94386 4.12833 4.14915 4.21782 4.28104 4.30300 4.44400 4.45562 4.62728 4.81658 4.82543 4.85910 4.91495 4.98108 4.99209 5.05988 5.09877 5.21072 5.23023 5.37906 5.39131 5.44518 5.47046 5.50028 5.61717 6.12926 6.52788 6.57185 6.78643 6.84962 7.18392 7.39489 8.76243 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.003884 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.678530 B = 7206.882550 C = 7775.901698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.252 3.748 4 H 0.024 0.976 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.933 3.067 10 H -0.260 1.260 11 H -0.293 1.293 12 H -0.261 1.261 13 N -0.694 5.694 14 C 0.551 3.449 15 O -0.560 6.560 16 C -0.222 4.222 17 C -0.024 4.024 18 C -0.177 4.177 19 C 0.174 3.826 20 C -0.049 4.049 21 C -0.139 4.139 22 C -0.146 4.146 23 N -0.527 5.527 24 C 0.355 3.645 25 O -0.478 6.478 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.270 0.730 32 H 0.404 0.596 33 H 0.164 0.836 34 H 0.183 0.817 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.469 8.169 -17.860 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.042 0.958 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.760 3.240 10 H -0.186 1.186 11 H -0.221 1.221 12 H -0.186 1.186 13 N -0.344 5.344 14 C 0.338 3.662 15 O -0.440 6.440 16 C -0.229 4.229 17 C -0.049 4.049 18 C -0.196 4.196 19 C 0.035 3.965 20 C -0.068 4.068 21 C -0.196 4.196 22 C -0.203 4.203 23 N -0.247 5.247 24 C 0.175 3.825 25 O -0.287 6.287 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.240 0.760 33 H 0.182 0.818 34 H 0.200 0.800 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -11.869 7.925 -17.286 22.416 hybrid contribution 1.011 -0.444 1.315 1.717 sum -10.858 7.482 -15.971 20.711 Atomic orbital electron populations 1.21748 0.95443 1.00431 1.01428 1.22217 0.95566 0.98601 1.01157 1.18805 0.93386 0.89538 0.83557 0.95771 1.21257 0.90107 1.38655 1.07081 0.92192 1.25491 0.95673 0.95825 0.99728 1.69960 1.10159 1.46061 1.30836 0.86090 0.79379 0.80003 0.78507 1.18609 1.22068 1.18552 1.45877 1.15249 1.56005 1.17240 1.18176 0.81997 0.78717 0.87335 1.90754 1.51850 1.60446 1.40957 1.21139 0.96452 1.08393 0.96872 1.22095 0.99053 0.93065 0.90715 1.22285 0.97840 0.99712 0.99767 1.21839 0.89704 0.91675 0.93232 1.20259 1.01731 0.95660 0.89144 1.21804 1.01913 0.93180 1.02725 1.21955 1.02153 1.00048 0.96155 1.67141 1.37350 1.19500 1.00711 1.19256 0.85105 0.90717 0.87380 1.84656 1.57672 1.50057 1.36303 0.92401 0.94334 0.93279 0.91213 0.93633 0.92050 0.75953 0.81821 0.79980 0.89777 0.91468 0.89722 0.93799 0.92782 0.89964 0.90472 0.72458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.51 71.98 0.61 -4.72 16 2 C -0.14 -5.94 5.11 30.59 0.16 -5.78 16 3 C 0.25 11.77 1.83 44.24 0.08 11.85 16 4 H 0.02 1.27 6.63 -2.38 -0.02 1.26 16 5 C -0.53 -28.47 9.31 25.60 0.24 -28.24 16 6 H 0.06 3.37 7.98 -2.91 -0.02 3.35 16 7 C 0.03 1.83 5.45 84.65 0.46 2.29 16 8 N -0.93 -55.05 13.96 21.45 0.30 -54.75 16 9 Si 0.93 44.48 24.41 68.60 1.67 46.15 16 10 H -0.26 -11.72 6.83 99.48 0.68 -11.04 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 12 H -0.26 -12.41 6.53 99.48 0.65 -11.76 16 13 N -0.69 -26.91 4.98 -449.30 -2.24 -29.14 16 14 C 0.55 20.98 6.34 86.69 0.55 21.53 16 15 O -0.56 -24.68 12.33 16.82 0.21 -24.47 16 16 C -0.22 -6.83 5.90 -19.91 -0.12 -6.95 16 17 C -0.02 -0.53 9.64 22.72 0.22 -0.31 16 18 C -0.18 -3.15 9.15 22.32 0.20 -2.95 16 19 C 0.17 3.63 5.79 42.58 0.25 3.87 16 20 C -0.05 -0.69 3.22 -11.54 -0.04 -0.73 16 21 C -0.14 -1.61 9.18 71.98 0.66 -0.95 16 22 C -0.15 -1.32 8.62 71.98 0.62 -0.70 16 23 N -0.53 -14.64 10.28 -296.06 -3.04 -17.68 16 24 C 0.35 11.09 7.77 85.13 0.66 11.75 16 25 O -0.48 -15.50 11.66 -66.39 -0.77 -16.27 16 26 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.04 1.64 7.84 -2.39 -0.02 1.62 16 28 H 0.05 1.99 5.65 -2.39 -0.01 1.98 16 29 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 30 H 0.05 2.06 3.22 -2.39 -0.01 2.05 16 31 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.40 13.43 6.64 -92.71 -0.62 12.82 16 33 H 0.16 3.02 6.52 -2.91 -0.02 3.00 16 34 H 0.18 1.82 6.29 -2.91 -0.02 1.80 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.08 0.50 6.47 -2.39 -0.02 0.48 16 42 H 0.41 10.31 9.06 -74.05 -0.67 9.63 16 Total: -1.00 -71.18 333.64 0.38 -70.80 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.31 Total: 25.40 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 4.56 Total: -0.03 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -4.98 Total: -101.57 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -0.57 Total: -40.74 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.67 Total: 46.15 kcal Total: -71.18 0.38 -70.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.384 kcal (2) G-P(sol) polarization free energy of solvation -71.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds