Wall clock time and date at job start Tue Mar 31 2020 06:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 H 1.08997 * 109.49787 * 304.93699 * 3 2 1 5 5 C 1.53195 * 109.49747 * 65.00133 * 3 2 1 6 6 N 1.46926 * 108.77637 * 174.58816 * 5 3 2 7 7 C 1.34780 * 120.62825 * 126.11758 * 6 5 3 8 8 O 1.21614 * 120.00321 * 353.78583 * 7 6 5 9 9 C 1.47375 * 119.99676 * 173.78267 * 7 6 5 10 10 C 1.47024 * 127.19241 * 150.56289 * 9 7 6 11 11 C 1.34174 * 105.95922 * 180.02562 * 10 9 7 12 12 O 1.34222 * 109.11933 * 0.02562 * 11 10 9 13 13 C 1.33649 * 110.90976 * 359.73043 * 12 11 10 14 14 C 1.46924 * 118.73826 * 306.38810 * 6 5 3 15 15 C 1.53192 * 108.77307 * 53.60767 * 14 6 5 16 16 C 1.53034 * 109.49928 * 184.83624 * 3 2 1 17 17 H 1.09003 * 109.46092 * 58.68252 * 16 3 2 18 18 N 1.46502 * 109.46207 * 298.70629 * 16 3 2 19 19 C 1.36942 * 119.99855 * 154.99786 * 18 16 3 20 20 H 1.07999 * 120.00242 * 0.02562 * 19 18 16 21 21 C 1.38808 * 119.99816 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99938 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99870 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47233 * 60.00225 * 23 21 19 25 25 H 1.48500 * 109.46987 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47224 * 299.99864 * 23 21 19 27 27 H 1.09001 * 109.47333 * 299.99739 * 1 2 3 28 28 H 1.08999 * 109.47258 * 59.99768 * 1 2 3 29 29 H 1.09000 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47333 * 240.00261 * 2 1 3 31 31 H 1.08999 * 109.47258 * 120.00231 * 2 1 3 32 32 H 1.08998 * 109.58640 * 54.79396 * 5 3 2 33 33 H 1.09000 * 109.70412 * 294.44580 * 5 3 2 34 34 H 1.07999 * 127.01831 * 359.97438 * 10 9 7 35 35 H 1.07991 * 125.44260 * 180.02562 * 11 10 9 36 36 H 1.07998 * 125.80179 * 180.28955 * 13 12 11 37 37 H 1.08992 * 109.58517 * 173.39649 * 14 6 5 38 38 H 1.09002 * 109.58650 * 293.82429 * 14 6 5 39 39 H 1.09000 * 109.49554 * 185.41140 * 15 14 6 40 40 H 1.09005 * 109.49406 * 65.31571 * 15 14 6 41 41 H 0.96993 * 119.99677 * 334.99577 * 18 16 3 42 42 H 0.97007 * 119.99910 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2414 3.4657 1.3494 7 6 1.4806 4.5585 1.5579 8 8 0.2695 4.4569 1.6019 9 6 2.1164 5.8765 1.7327 10 6 1.5529 7.1885 1.3825 11 6 2.4855 8.0924 1.7193 12 8 3.5490 7.4558 2.2344 13 6 3.3490 6.1345 2.2572 14 6 3.6921 3.5899 1.1523 15 6 4.0740 2.8880 -0.1547 16 6 3.5655 1.4450 -0.1216 17 1 3.8574 0.9362 -1.0404 18 7 4.1479 0.7485 1.0281 19 6 5.3861 0.1727 0.9245 20 1 5.9334 0.2324 -0.0046 21 6 5.9382 -0.4867 2.0141 22 7 5.2714 -0.5590 3.1466 23 14 7.6275 -1.2716 1.8730 24 1 8.6310 -0.2295 1.5381 25 1 7.9868 -1.9085 3.1654 26 1 7.6071 -2.3012 0.8031 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.9907 1.5397 2.1547 33 1 0.5497 2.2172 1.3565 34 1 0.5860 7.3846 0.9430 35 1 2.3950 9.1614 1.5958 36 1 4.0457 5.3964 2.6262 37 1 3.9640 4.6438 1.0941 38 1 4.2156 3.1209 1.9854 39 1 5.1584 2.8892 -0.2649 40 1 3.6218 3.4139 -0.9956 41 1 3.6566 0.6953 1.8627 42 1 5.6571 -1.0202 3.9079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037799898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:18 Heat of formation + Delta-G solvation = -5.310077 kcal Electronic energy + Delta-G solvation = -24349.126966 eV Core-core repulsion = 20910.314832 eV Total energy + Delta-G solvation = -3438.812134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.60475 -39.87937 -37.68829 -34.54802 -33.77462 -32.77549 -31.70340 -30.22664 -29.35335 -28.29071 -25.52803 -23.87285 -23.61039 -22.56311 -21.52480 -20.74466 -19.81533 -18.61469 -17.38494 -17.28053 -16.52062 -16.08529 -15.73558 -14.98012 -14.70870 -14.42673 -14.15626 -13.95577 -13.54006 -13.29552 -13.15124 -13.07483 -12.94150 -12.52787 -12.34399 -12.15229 -11.72675 -11.41408 -11.09996 -10.97742 -10.81611 -10.73763 -10.29593 -10.27274 -10.20753 -9.89825 -9.79662 -9.64628 -9.56030 -8.96291 -8.76589 -8.22358 -7.00100 -5.81480 -3.09980 1.41148 2.05120 2.86138 3.19163 3.40043 3.45011 3.45629 3.46252 4.54310 4.55308 4.67483 4.94974 5.10237 5.26641 5.33659 5.37452 5.51022 5.52693 5.56955 5.60295 5.70389 5.80085 5.82258 5.88521 5.93427 6.06155 6.14792 6.17976 6.20378 6.34629 6.38288 6.41197 6.56458 6.64226 6.69745 6.77179 6.89700 6.93886 7.00922 7.65992 7.70629 8.37088 8.40472 9.48779 10.05268 10.40669 11.40806 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014875 B = 0.005203 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.917426 B = 5379.875522 C = 6721.580916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.120 3.880 6 N -0.596 5.596 7 C 0.583 3.417 8 O -0.549 6.549 9 C -0.228 4.228 10 C -0.169 4.169 11 C -0.045 4.045 12 O -0.177 6.177 13 C 0.016 3.984 14 C 0.099 3.901 15 C -0.149 4.149 16 C 0.178 3.822 17 H 0.051 0.949 18 N -0.718 5.718 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.010 4.010 22 N -0.933 5.933 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.206 0.794 36 H 0.219 0.781 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.384 0.616 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.561 12.776 -4.570 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.002 4.002 6 N -0.327 5.327 7 C 0.372 3.628 8 O -0.429 6.429 9 C -0.232 4.232 10 C -0.188 4.188 11 C -0.111 4.111 12 O -0.072 6.072 13 C -0.053 4.053 14 C -0.023 4.023 15 C -0.190 4.190 16 C 0.068 3.932 17 H 0.069 0.931 18 N -0.361 5.361 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.206 4.206 22 N -0.581 5.581 23 Si 0.735 3.265 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.174 0.826 35 H 0.223 0.777 36 H 0.235 0.765 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.219 0.781 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.776 12.765 -4.476 14.709 hybrid contribution 0.778 -0.557 0.130 0.966 sum -4.998 12.208 -4.346 13.889 Atomic orbital electron populations 1.21854 0.96804 1.01015 1.01391 1.21416 0.94291 0.95707 1.03368 1.21746 0.97345 0.96144 0.97058 0.91550 1.21713 0.98867 0.81202 0.98409 1.47974 1.08638 1.06363 1.69773 1.17309 0.86144 0.82689 0.76641 1.90739 1.13681 1.86014 1.52450 1.21541 0.96398 0.94851 1.10424 1.22746 1.01169 0.90001 1.04902 1.23891 0.85890 0.98563 1.02784 1.83812 1.39988 1.19052 1.64338 1.24897 0.97245 0.82525 1.00683 1.22137 0.79328 1.00568 1.00301 1.22513 1.01788 0.99262 0.95438 1.20225 0.89768 0.90616 0.92622 0.93098 1.42469 1.19007 1.64038 1.10568 1.19174 0.93547 1.27152 0.97063 0.91322 1.24688 0.98502 1.01437 0.96016 1.69637 1.38142 1.48058 1.02261 0.86324 0.84369 0.79213 0.76578 1.21380 1.21810 1.21372 0.92779 0.93367 0.93164 0.92028 0.90476 0.90597 0.89484 0.82619 0.77706 0.76480 0.90484 0.89510 0.90672 0.93277 0.78103 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 2 C -0.11 -1.75 5.19 -26.73 -0.14 -1.89 16 3 C -0.10 -1.68 2.14 -90.50 -0.19 -1.88 16 4 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 5 C 0.12 2.04 5.03 -3.71 -0.02 2.02 16 6 N -0.60 -9.80 2.97 -174.06 -0.52 -10.32 16 7 C 0.58 10.01 7.65 -12.54 -0.10 9.91 16 8 O -0.55 -11.01 16.50 5.27 0.09 -10.93 16 9 C -0.23 -3.27 5.72 -103.28 -0.59 -3.86 16 10 C -0.17 -2.04 11.12 -37.45 -0.42 -2.46 16 11 C -0.05 -0.44 12.03 29.30 0.35 -0.09 16 12 O -0.18 -2.01 10.52 7.64 0.08 -1.93 16 13 C 0.02 0.20 9.72 30.08 0.29 0.49 16 14 C 0.10 1.53 5.00 -3.71 -0.02 1.51 16 15 C -0.15 -2.42 5.78 -26.61 -0.15 -2.58 16 16 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 17 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 18 N -0.72 -16.06 3.72 -53.39 -0.20 -16.26 16 19 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 20 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -26.57 13.06 55.49 0.72 -25.84 16 23 Si 0.90 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.42 7.69 -51.93 -0.40 1.02 16 32 H 0.08 1.41 6.64 -51.93 -0.34 1.06 16 33 H 0.09 1.50 5.72 -51.93 -0.30 1.21 16 34 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.21 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.22 2.29 6.45 -52.49 -0.34 1.95 16 37 H 0.08 1.01 4.24 -51.93 -0.22 0.79 16 38 H 0.09 1.52 7.74 -51.93 -0.40 1.12 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.38 9.22 5.94 -40.82 -0.24 8.97 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -30.52 334.96 -6.78 -37.30 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.94 Total: 10.61 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.04 Total: -4.07 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.01 Total: -52.43 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.17 Total: -12.85 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.52 -6.78 -37.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037799898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.988 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds